prot_Ecto-sp13_S_contig12534.2100.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig12534.2100.1
Unique Name	prot_Ecto-sp13_S_contig12534.2100.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	61

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2SC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC71_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.130e-31
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFRE+VLWT++ LFIFLVCCQIPIYGVQSAKSSDPFYWMRV+LASNRGTLMELG S
Sbjct:   23 DRKIPFRERVLWTIVVLFIFLVCCQIPIYGVQSAKSSDPFYWMRVLLASNRGTLMELGIS 82

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A4D9D8Z0_9STRA (Plug_translocon domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8Z0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.350e-30
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0

Query:    1 INNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            ++ +IPFREKVLWTV+TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   22 VDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 82

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A6H5L214_9PHAE (Plug_translocon domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5L214_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.270e-30
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S1D8Y6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8Y6_CYCTE)

HSP 1 Score: 116 bits (290), Expect = 8.160e-30
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREK+LWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   27 DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 86

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S4MCE0_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4MCE0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.210e-29
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREKVLWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: B5YLQ8_THAPS (Protein translocase complex subunit n=5 Tax=Bacillariophyta TaxID=2836 RepID=B5YLQ8_THAPS)

HSP 1 Score: 117 bits (293), Expect = 1.230e-29
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREKVLWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2B8N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8N6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.450e-29
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFRE++LWTVI LFIFLVCCQIP+YGVQ+ KSSDPFYW+RV+LASNRGTLMELG S
Sbjct:   16 DRKIPFRERILWTVIVLFIFLVCCQIPLYGVQTTKSSDPFYWVRVLLASNRGTLMELGIS 75

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: B7GD39_PHATC (Transport protein Sec61 alpha subunit n=7 Tax=Bacillariophycidae TaxID=33850 RepID=B7GD39_PHATC)

HSP 1 Score: 116 bits (290), Expect = 5.780e-29
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREK+LWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:  108 DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 167

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2J237_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2J237_9DINO)

HSP 1 Score: 108 bits (270), Expect = 6.720e-29
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + +IPFREK+LWT I+LF+FLVCCQIP+YG+ ++KS+DPFYWMRVILASNRGTLMELG S
Sbjct:   39 DRKIPFREKILWTAISLFVFLVCCQIPLYGISNSKSADPFYWMRVILASNRGTLMELGIS 98

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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A6V2TM26_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TM26_HETAK)

HSP 1 Score: 114 bits (286), Expect = 1.200e-28
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    2 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 61
            + ++PFREK+LWTVITLFIFLVCCQIP+YG+QS KSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKVPFREKMLWTVITLFIFLVCCQIPLYGIQSGKSSDPFYWMRVILASNRGTLMELGIS 80

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2SC71_9STRA	7.130e-31	85.00	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A4D9D8Z0_9STRA	2.350e-30	90.16	Plug_translocon domain-containing protein n=2 Tax=...	[more]
A0A6H5L214_9PHAE	3.270e-30	93.33	Plug_translocon domain-containing protein n=3 Tax=...	[more]
A0A7S1D8Y6_CYCTE	8.160e-30	90.00	Hypothetical protein (Fragment) n=1 Tax=Cyclophora...	[more]
A0A7S4MCE0_9STRA	1.210e-29	91.67	Hypothetical protein n=2 Tax=Bacillariophyta TaxID...	[more]
B5YLQ8_THAPS	1.230e-29	91.67	Protein translocase complex subunit n=5 Tax=Bacill...	[more]
A0A7S2B8N6_9STRA	1.450e-29	80.00	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
B7GD39_PHATC	5.780e-29	90.00	Transport protein Sec61 alpha subunit n=7 Tax=Baci...	[more]
A0A7S2J237_9DINO	6.720e-29	76.67	Hypothetical protein (Fragment) n=2 Tax=Alexandriu...	[more]
A0A6V2TM26_HETAK	1.200e-28	85.00	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023201	SecY domain superfamily	GENE3D	1.10.3370.10		coord: 7..59 e-value: 1.4E-19 score: 72.1
IPR023201	SecY domain superfamily	SUPERFAMILY	103491	Preprotein translocase SecY subunit	coord: 4..59
IPR019561	Translocon Sec61/SecY, plug domain	PFAM	PF10559	Plug_translocon	coord: 19..53 e-value: 5.5E-20 score: 70.9
IPR002208	SecY/SEC61-alpha family	PANTHER	PTHR10906	SECY/SEC61-ALPHA FAMILY MEMBER	coord: 3..61
None	No IPR available	PANTHER	PTHR10906:SF10	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 2	coord: 3..61
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..61
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	TMHMM	TMhelix		coord: 12..34

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12534	contig	Ecto-sp13_S_contig12534:4593..4775 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12534.2100.1	mRNA_Ecto-sp13_S_contig12534.2100.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig12534 4593..4775 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig12534.2100.1 ID=prot_Ecto-sp13_S_contig12534.2100.1|Name=mRNA_Ecto-sp13_S_contig12534.2100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
INNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILAS
NRGTLMELGRS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023201	SecY_dom_sf
IPR019561	Translocon_Sec61/SecY_plug_dom
IPR002208	SecY/SEC61-alpha