mRNA_Ecto-sp13_S_contig12534.2100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12534.2100.1
Unique NamemRNA_Ecto-sp13_S_contig12534.2100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2SC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC71_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.130e-31
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFRE+VLWT++ LFIFLVCCQIPIYGVQSAKSSDPFYWMRV+LASNRGTLMELG S
Sbjct:   23 DRKIPFRERVLWTIVVLFIFLVCCQIPIYGVQSAKSSDPFYWMRVLLASNRGTLMELGIS 82
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A4D9D8Z0_9STRA (Plug_translocon domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8Z0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.350e-30
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 INNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            ++ +IPFREKVLWTV+TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   22 VDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 82
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A6H5L214_9PHAE (Plug_translocon domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5L214_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.270e-30
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S1D8Y6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8Y6_CYCTE)

HSP 1 Score: 116 bits (290), Expect = 8.160e-30
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREK+LWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   27 DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 86
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S4MCE0_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4MCE0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.210e-29
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREKVLWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: B5YLQ8_THAPS (Protein translocase complex subunit n=5 Tax=Bacillariophyta TaxID=2836 RepID=B5YLQ8_THAPS)

HSP 1 Score: 117 bits (293), Expect = 1.230e-29
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREKVLWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKIPFREKVLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 80
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2B8N6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8N6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.450e-29
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFRE++LWTVI LFIFLVCCQIP+YGVQ+ KSSDPFYW+RV+LASNRGTLMELG S
Sbjct:   16 DRKIPFRERILWTVIVLFIFLVCCQIPLYGVQTTKSSDPFYWVRVLLASNRGTLMELGIS 75
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: B7GD39_PHATC (Transport protein Sec61 alpha subunit n=7 Tax=Bacillariophycidae TaxID=33850 RepID=B7GD39_PHATC)

HSP 1 Score: 116 bits (290), Expect = 5.780e-29
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREK+LWT ITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELG S
Sbjct:  108 DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGIS 167
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A7S2J237_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2J237_9DINO)

HSP 1 Score: 108 bits (270), Expect = 6.720e-29
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + +IPFREK+LWT I+LF+FLVCCQIP+YG+ ++KS+DPFYWMRVILASNRGTLMELG S
Sbjct:   39 DRKIPFREKILWTAISLFVFLVCCQIPLYGISNSKSADPFYWMRVILASNRGTLMELGIS 98
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BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Match: A0A6V2TM26_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TM26_HETAK)

HSP 1 Score: 114 bits (286), Expect = 1.200e-28
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    4 NNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGRS 183
            + ++PFREK+LWTVITLFIFLVCCQIP+YG+QS KSSDPFYWMRVILASNRGTLMELG S
Sbjct:   21 DRKVPFREKMLWTVITLFIFLVCCQIPLYGIQSGKSSDPFYWMRVILASNRGTLMELGIS 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12534.2100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SC71_9STRA7.130e-3185.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D8Z0_9STRA2.350e-3090.16Plug_translocon domain-containing protein n=2 Tax=... [more]
A0A6H5L214_9PHAE3.270e-3093.33Plug_translocon domain-containing protein n=3 Tax=... [more]
A0A7S1D8Y6_CYCTE8.160e-3090.00Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4MCE0_9STRA1.210e-2991.67Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
B5YLQ8_THAPS1.230e-2991.67Protein translocase complex subunit n=5 Tax=Bacill... [more]
A0A7S2B8N6_9STRA1.450e-2980.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
B7GD39_PHATC5.780e-2990.00Transport protein Sec61 alpha subunit n=7 Tax=Baci... [more]
A0A7S2J237_9DINO6.720e-2976.67Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
A0A6V2TM26_HETAK1.200e-2885.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12534contigEcto-sp13_S_contig12534:4593..4775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue5.9e-25
Seed eggNOG ortholog2880.D7FWL7
Preferred nameSEC61A1
Model size183
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Exons1
EggNOG free text desc.protein transport
EggNOG OGsCOG0201@1,KOG1373@2759
Cds size183
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.3133323-CDS-Ecto-sp13_S_contig12534:4592..47751681462668.3133323-CDS-Ecto-sp13_S_contig12534:4592..4775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12534 4593..4775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12534.2100.1prot_Ecto-sp13_S_contig12534.2100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12534 4593..4775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12534.2100.1

>prot_Ecto-sp13_S_contig12534.2100.1 ID=prot_Ecto-sp13_S_contig12534.2100.1|Name=mRNA_Ecto-sp13_S_contig12534.2100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
INNQIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILAS
NRGTLMELGRS
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mRNA from alignment at Ecto-sp13_S_contig12534:4593..4775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12534.2100.1 ID=mRNA_Ecto-sp13_S_contig12534.2100.1|Name=mRNA_Ecto-sp13_S_contig12534.2100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:4593..4775+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAAACAATCAGATCCCTTTCCGGGAGAAAGTGCTGTGGACGGTGATCAC
GCTCTTCATCTTCCTAGTATGCTGCCAGATTCCCATCTACGGCGTACAGT
CGGCCAAGTCGTCGGACCCGTTCTACTGGATGCGCGTCATCCTCGCCTCC
AACCGCGGCACGCTCATGGAGCTCGGTAGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12534:4593..4775+

>mRNA_Ecto-sp13_S_contig12534.2100.1 ID=mRNA_Ecto-sp13_S_contig12534.2100.1|Name=mRNA_Ecto-sp13_S_contig12534.2100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12534:4593..4775+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAAACAATCAGATCCCTTTCCGGGAGAAAGTGCTGTGGACGGTGATCAC
GCTCTTCATCTTCCTAGTATGCTGCCAGATTCCCATCTACGGCGTACAGT
CGGCCAAGTCGTCGGACCCGTTCTACTGGATGCGCGTCATCCTCGCCTCC
AACCGCGGCACGCTCATGGAGCTCGGTAGGTCG
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