prot_Ecto-sp13_S_contig10183.209.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10183.209.1
Unique Nameprot_Ecto-sp13_S_contig10183.209.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length242
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10183.209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 172..182
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 204..214
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 237..241
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..77
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..203
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..146
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.581
NoneNo IPR availableTMHMMTMhelixcoord: 210..232
NoneNo IPR availableTMHMMTMhelixcoord: 178..200
NoneNo IPR availableTMHMMTMhelixcoord: 89..107
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 152..171
NoneNo IPR availableTMHMMTMhelixcoord: 128..147
NoneNo IPR availableTMHMMTMhelixcoord: 26..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10183contigEcto-sp13_S_contig10183:2374..5359 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10183.209.1mRNA_Ecto-sp13_S_contig10183.209.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10183 2374..5359 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10183.209.1 ID=prot_Ecto-sp13_S_contig10183.209.1|Name=mRNA_Ecto-sp13_S_contig10183.209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
VNVLFLVLSHTLCLLIQGPLLHRMEAVPAHVTLTVGGLLLSLRLTAKDED
ENSTAQLLLLVFFVMLSASDLWEAWFFFSSPGDGPVPSLAFLSVPFLIAG
ITSIVTARRNFPSNVRQDPKKTAAYEMLLTHGCCVFFPSASFWHAYPVPD
RAMAHWATCSAGLLVSAWLLAADRRNVPVGLPTVFCCVLVAMADAGAAFW
SVMAPPPTVYAPSPAILVVPYLAAAVACLGTASRVMRGAYR*
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