mRNA_Ecto-sp13_S_contig9322.20920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9322.20920.1
Unique NamemRNA_Ecto-sp13_S_contig9322.20920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.620e-24
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   16 CPSLL-----PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            CP  L     P+   TVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV
Sbjct: 1681 CPDYLVVIEQPMDLGTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 1743          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: D7FK58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK58_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.040e-24
Identity = 51/62 (82.26%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   16 CPSLL-----PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAK 186
            CP  L     P+   TVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAK
Sbjct:   88 CPDYLMVIEQPMDLGTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAK 149          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A7S2B241_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B241_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.130e-10
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKL 180
            P+   TVA  L   +YH     ++DVRL+F NA+KYNPPKHP+HVAA  L
Sbjct:  162 PMDLSTVANKLRTGQYHMVKDMIADVRLVFSNAKKYNPPKHPVHVAACTL 211          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A8C5C2B3_GADMO (Bromodomain-containing protein 3-like n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5C2B3_GADMO)

HSP 1 Score: 58.2 bits (139), Expect = 2.490e-8
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   28 LPVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            LP+   +V + +D  KYHD  AF +DVRLIF N  KYNPP H +   A KL  V
Sbjct:  313 LPMDLGSVKKKMDERKYHDTQAFAADVRLIFSNCYKYNPPDHEVVAMARKLQDV 366          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A7S1GYD1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GYD1_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.210e-8
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            P+   TV   LD   Y     F  DVR  FDNA  YNPPKHP+H+AA KL +V
Sbjct:  152 PMDLGTVQARLDQSLYLSPEEFGEDVRRTFDNAMSYNPPKHPVHIAAKKLLRV 204          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A6J2UZY5_CHACN (bromodomain-containing protein 3-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UZY5_CHACN)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-7
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            P+   T+ + +D  +YHDA +F +DVRL+F N  KYNPP H +   A KL  V
Sbjct:  339 PMDLSTIKKKMDGREYHDAQSFAADVRLMFSNCYKYNPPDHEVVAMARKLQDV 391          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A6J0V6P8_9SAUR (bromodomain-containing protein 3 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0V6P8_9SAUR)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-7
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            P+   TV + +D+ +YHDA  F +D+RL+F N  KYNPP H +   A KL  V
Sbjct:  341 PMDLSTVKKKMDSREYHDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDV 393          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A8J4XB01_CLAMG (Bromodomain-containing protein 4-like isoform X1 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4XB01_CLAMG)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-7
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKLAKV 189
            P+   T+ E LD  +Y DA  F +DVRL+F N  KYNPP H + V A KL  V
Sbjct:  513 PMDLTTIKERLDTRQYRDAQEFAADVRLMFSNCYKYNPPDHEVVVMARKLQDV 565          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: A0A7N8XIQ7_9TELE (Bromodomain-containing protein 3-like n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=A0A7N8XIQ7_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 1.610e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKL 180
            P+   TV + +DA +Y DA AF +DVRLIF N  KYNPP H +   A KL
Sbjct:  312 PMDLSTVKKKMDAGEYQDAQAFAADVRLIFSNCYKYNPPNHDVVSKARKL 361          
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Match: UPI00145B7FE5 (bromodomain-containing protein 3-like n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B7FE5)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-7
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   31 PVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPKHPIHVAASKL 180
            P+   T+ + +DA +Y DA AF +DVRLIF N  KYNPP H +   A KL
Sbjct:  277 PMDLGTIKQKMDARQYPDAQAFAADVRLIFSNCYKYNPPTHDVVAKARKL 326          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9322.20920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V8_9PHAE2.620e-2482.54Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
D7FK58_ECTSI9.040e-2482.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B241_9STRA4.130e-1054.00Histone acetyltransferase (Fragment) n=1 Tax=Flore... [more]
A0A8C5C2B3_GADMO2.490e-850.00Bromodomain-containing protein 3-like n=2 Tax=Gadu... [more]
A0A7S1GYD1_HEMAN3.210e-850.94Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6J2UZY5_CHACN1.190e-745.28bromodomain-containing protein 3-like n=1 Tax=Chan... [more]
A0A6J0V6P8_9SAUR1.190e-745.28bromodomain-containing protein 3 n=1 Tax=Pogona vi... [more]
A0A8J4XB01_CLAMG1.210e-749.06Bromodomain-containing protein 4-like isoform X1 (... [more]
A0A7N8XIQ7_9TELE1.610e-752.00Bromodomain-containing protein 3-like n=1 Tax=Mast... [more]
UPI00145B7FE51.620e-750.00bromodomain-containing protein 3-like n=1 Tax=Peri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9322contigEcto-sp13_S_contig9322:5390..5578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score102.1
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D7FK58
Model size189
KEGG koko:K11798
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
Cds size189
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.540043-CDS-Ecto-sp13_S_contig9322:5389..55781681464201.540043-CDS-Ecto-sp13_S_contig9322:5389..5578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9322 5390..5578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9322.20920.1prot_Ecto-sp13_S_contig9322.20920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9322 5390..5578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9322.20920.1

>prot_Ecto-sp13_S_contig9322.20920.1 ID=prot_Ecto-sp13_S_contig9322.20920.1|Name=mRNA_Ecto-sp13_S_contig9322.20920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MFFLCCPSLLPVPARTVAETLDAMKYHDAGAFVSDVRLIFDNARKYNPPK
HPIHVAASKLAKV
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mRNA from alignment at Ecto-sp13_S_contig9322:5390..5578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9322.20920.1 ID=mRNA_Ecto-sp13_S_contig9322.20920.1|Name=mRNA_Ecto-sp13_S_contig9322.20920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9322:5390..5578+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTTCTTGTGTTGCCCCTCCCTCCTGCCTGTTCCTGCCAGGACGGT GGCGGAGACGCTGGACGCGATGAAGTATCACGATGCCGGCGCGTTCGTGT CGGACGTCCGGCTGATCTTCGACAACGCTCGCAAGTACAACCCGCCCAAG CATCCCATCCACGTGGCCGCCTCGAAGCTCGCCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9322:5390..5578+

>mRNA_Ecto-sp13_S_contig9322.20920.1 ID=mRNA_Ecto-sp13_S_contig9322.20920.1|Name=mRNA_Ecto-sp13_S_contig9322.20920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9322:5390..5578+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTTCTTGTGTTGCCCCTCCCTCCTGCCTGTTCCTGCCAGGACGGT
GGCGGAGACGCTGGACGCGATGAAGTATCACGATGCCGGCGCGTTCGTGT
CGGACGTCCGGCTGATCTTCGACAACGCTCGCAAGTACAACCCGCCCAAG
CATCCCATCCACGTGGCCGCCTCGAAGCTCGCCAAGGTG
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