mRNA_Ecto-sp13_S_contig9282.20876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9282.20876.1
Unique NamemRNA_Ecto-sp13_S_contig9282.20876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Match: D7FXM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM8_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.390e-27
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 VSRDHVESAKNAMATSTSINRGDESTENTPLGILALLKFATLLSVTACFLLTVAKKAADSAVMLITRPPDVVPRPAP 231
            VSRD VESA++ M TSTSIN  DE TENTPLGI ALLKFATLLSVTACFLL V  KAADS VMLIT PPDVVPRP P
Sbjct:   29 VSRDSVESAQHTMTTSTSINMRDERTENTPLGIWALLKFATLLSVTACFLLRVVLKAADSVVMLITGPPDVVPRPTP 105
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BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Match: A0A6H5L4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.280e-26
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:   49 TSINRGDESTENTPLGILALLKFATLLSVTACFLLTVAKKAADSAVMLITRPPDVVPRPAPSPDSAPPQPGRWRGEPVVQRQKTEEVQRIKAAAEERVLKIQNGGGY 369
            TS NRG EST+NTPLG+ ALLKFA LL VT  FLL VAKKA  S VMLI  PPDVVP+PA           R R  PVVQ + TEEVQRI+AAAE+R L+I NGG +
Sbjct:    3 TSTNRGHESTQNTPLGVWALLKFAALLRVTVRFLLMVAKKAVGSVVMLIRGPPDVVPKPAXXXXXXXXX-XRSRRAPVVQHRVTEEVQRIQAAAEDRALRILNGGRF 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM8_ECTSI2.390e-2780.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4S7_9PHAE4.280e-2662.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9282contigEcto-sp13_S_contig9282:4052..5919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002350.1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.583159-CDS-Ecto-sp13_S_contig9282:4051..41741681464198.583159-CDS-Ecto-sp13_S_contig9282:4051..4174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9282 4052..4174 -
1681464198.5953748-CDS-Ecto-sp13_S_contig9282:5045..52191681464198.5953748-CDS-Ecto-sp13_S_contig9282:5045..5219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9282 5046..5219 -
1681464198.6039407-CDS-Ecto-sp13_S_contig9282:5838..59191681464198.6039407-CDS-Ecto-sp13_S_contig9282:5838..5919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9282 5839..5919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9282.20876.1prot_Ecto-sp13_S_contig9282.20876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9282 4052..5919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9282.20876.1

>prot_Ecto-sp13_S_contig9282.20876.1 ID=prot_Ecto-sp13_S_contig9282.20876.1|Name=mRNA_Ecto-sp13_S_contig9282.20876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
VSRDHVESAKNAMATSTSINRGDESTENTPLGILALLKFATLLSVTACFL
LTVAKKAADSAVMLITRPPDVVPRPAPSPDSAPPQPGRWRGEPVVQRQKT
EEVQRIKAAAEERVLKIQNGGGYHL*
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mRNA from alignment at Ecto-sp13_S_contig9282:4052..5919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9282.20876.1 ID=mRNA_Ecto-sp13_S_contig9282.20876.1|Name=mRNA_Ecto-sp13_S_contig9282.20876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9282:4052..5919- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCAAGGGATCACGTGGAGTCAGCGAAAAACGCAATGGCCACATCAAC
GTCGATCAACAGGGGAGATGAAAGCACCGAGGTGAGCGAGGCAATCACCT
ATGCTCGTTGGAAGTCTCCTTGTTGTTGTCAGTCTTTGCCTCTCTTTTTC
TCGGGGAGATTTGTTGTAGGAGCAGACGGAAACAAATCAAGGCTTATTGA
AAGTAGTCGAATTTGTAACGTCGTTGTTAGGGTATGCATAAATTGCCACG
GAAATAGGGGGTCCCCTCCCAAGCGGGAGCATGGGAGTAGCCACGACCTC
GGCACTCTATCGAAGCTAGGTGTTCACACAAAGTCTTACGAGGACTAGTC
TAGAGAGAGCAACGCAGAGACAAGGAGCGAGGTGGACACTGTGAGGGCTT
CGAGTGGGTTGCCAGCTGGAGGAGCGGCAAACAAGTTGGTCTTTCGATCA
GCGAATCGTGGAGGACCCGAGAGGGCCACCCAACAGCAGCAGCAGGTGTA
CGAGGTGCTTCATAAGGATTGATTTATGAGCGCTGTGGAACATGTTTTGC
CTTTTTCCGGTCACTTTTTCGTCCGCTTGGTATACGCTGTCTTCGTCAAA
GCAAGAAAATAGAAAATGTATGTCGTTCATGCATACCAAAATTCTCTCTC
CTTCTCTTGTACGATCCATTTGTGAACCTCCCTCTTCACTATCTTTAAAG
AACACGCCCTTGGGAATCTTGGCTCTACTCAAGTTTGCTACGCTGCTGAG
CGTTACAGCATGCTTCTTGCTGACGGTGGCGAAAAAGGCTGCGGATTCTG
CGGTTATGCTGATCACAAGGCCGCCGGATGTGGTGCCGAGACCCGCTCCT
TCCCCTGACTCCGCTCCCCCTCAGGTGCCGCACAAGAGGAAAAGGACGAA
ACCAAATAATTGGGGGAATACTGACCGCGTGAATTTCGCTAGCGTTCATG
ATAGGAGCCGGAAGGATCAACACAGTTCTCTCCGAACCGTATCCGGCTGC
GAGTTCTCGCCGGGAAGCATGGGAAATGCTGTTGACGAGCTACAGTCTAA
ATCGTTTGGATACAACGCGAGAAGCTGTTCACAGTTCGTGTGACTGCGAC
AGCCGAATCCGTTTCCGTAGTCACAAGGTTGCGAGGTACCAACGAACCAA
CGGCGAACAGTCCGATAAAGAACCTAAAGTAGATCCTGTGAGTAGGCCCA
AAATAATGTTTTACTGCTACCGTGGGTAGTCTTAACTGATGTTCTTTGCT
TCGAACTACAGTATTTCTATGATTGGCGCAAAAACTCCGAGAAAAGGTGC
AGCGAAATGTCATTTAGTGGTTATTCTCCCCAACACGTGTGTTTCGGTAA
TTTCTTTTCCTGTGAACTATTCTTCGAATTCGTCAAACCCGCGCGTGCTT
TTTCACTCGATTTGGGATGTACAAGGTTTGTTGGACATGTGCATGCATCC
GGAAAGAGAGGCTATTTCCCGCTCTTCCTTCAGATCATGCCCGAATGGCG
AGAAGAACTGGCCGTTGCAACCTACTCGGACCATGTCATGGCCGGCCCGG
TGTTTACTTCAGATCATAATTAGATTCGGTGGCTGTTGCGTTTCTTCGAT
TGGTAGCGCTTACGTTTTCCGTCCCACTCGTGCTGTTGGGTTCAGTTGAT
GATTGTTTCACTGAGTGTTTCGCGGCTACTATTTATTGTGCTCATTCGTT
TTCACGCGCGCGGTGCAACATCATGTTCGTTTCAATGGGTGTCAGCCTGG
ACGCTGGAGGGGAGAGCCTGTTGTTCAACGTCAGAAGACGGAGGAGGTGC
AGAGAATCAAGGCCGCCGCGGAGGAAAGGGTGCTGAAGATTCAGAACGGA
GGTGGATATCATCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9282:4052..5919-

>mRNA_Ecto-sp13_S_contig9282.20876.1 ID=mRNA_Ecto-sp13_S_contig9282.20876.1|Name=mRNA_Ecto-sp13_S_contig9282.20876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9282:4052..5919- (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCAAGGGATCACGTGGAGTCAGCGAAAAACGCAATGGCCACATCAAC
GTCGATCAACAGGGGAGATGAAAGCACCGAGAACACGCCCTTGGGAATCT
TGGCTCTACTCAAGTTTGCTACGCTGCTGAGCGTTACAGCATGCTTCTTG
CTGACGGTGGCGAAAAAGGCTGCGGATTCTGCGGTTATGCTGATCACAAG
GCCGCCGGATGTGGTGCCGAGACCCGCTCCTTCCCCTGACTCCGCTCCCC
CTCAGCCTGGACGCTGGAGGGGAGAGCCTGTTGTTCAACGTCAGAAGACG
GAGGAGGTGCAGAGAATCAAGGCCGCCGCGGAGGAAAGGGTGCTGAAGAT
TCAGAACGGAGGTGGATATCATCTTTGA
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