prot_Ecto-sp13_S_contig9282.20876.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9282.20876.1
Unique Nameprot_Ecto-sp13_S_contig9282.20876.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length126
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Match: D7FXM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM8_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.390e-27
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 0 
Query:    1 VSRDHVESAKNAMATSTSINRGDESTENTPLGILALLKFATLLSVTACFLLTVAKKAADSAVMLITRPPDVVPRPAP 77
            VSRD VESA++ M TSTSIN  DE TENTPLGI ALLKFATLLSVTACFLL V  KAADS VMLIT PPDVVPRP P
Sbjct:   29 VSRDSVESAQHTMTTSTSINMRDERTENTPLGIWALLKFATLLSVTACFLLRVVLKAADSVVMLITGPPDVVPRPTP 105
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BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Match: A0A6H5L4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.280e-26
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 0 
Query:   17 TSINRGDESTENTPLGILALLKFATLLSVTACFLLTVAKKAADSAVMLITRPPDVVPRPAPSPDSAPPQPGRWRGEPVVQRQKTEEVQRIKAAAEERVLKIQNGGGY 123
            TS NRG EST+NTPLG+ ALLKFA LL VT  FLL VAKKA  S VMLI  PPDVVP+PA           R R  PVVQ + TEEVQRI+AAAE+R L+I NGG +
Sbjct:    3 TSTNRGHESTQNTPLGVWALLKFAALLRVTVRFLLMVAKKAVGSVVMLIRGPPDVVPKPAXXXXXXXXX-XRSRRAPVVQHRVTEEVQRIQAAAEDRALRILNGGRF 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9282.20876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM8_ECTSI2.390e-2780.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4S7_9PHAE4.280e-2662.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..54
NoneNo IPR availableTMHMMTMhelixcoord: 31..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9282contigEcto-sp13_S_contig9282:4052..5919 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9282.20876.1mRNA_Ecto-sp13_S_contig9282.20876.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9282 4052..5919 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9282.20876.1 ID=prot_Ecto-sp13_S_contig9282.20876.1|Name=mRNA_Ecto-sp13_S_contig9282.20876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
VSRDHVESAKNAMATSTSINRGDESTENTPLGILALLKFATLLSVTACFL
LTVAKKAADSAVMLITRPPDVVPRPAPSPDSAPPQPGRWRGEPVVQRQKT
EEVQRIKAAAEERVLKIQNGGGYHL*
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