mRNA_Ecto-sp13_S_contig92762.20869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92762.20869.1
Unique NamemRNA_Ecto-sp13_S_contig92762.20869.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.810e-22
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 2 
Query:  167 LIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            LIIWDE+ M+ +Y  EALD TLKDL++NDR FGG  +L SGDWRQ  P++K G+P++ V+ A +SSH WKH
Sbjct:   28 LIIWDELPMTHRYCVEALDRTLKDLMRNDRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKH 98
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A34E83 (uncharacterized protein LOC114724484 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A34E83)

HSP 1 Score: 87.4 bits (215), Expect = 1.540e-17
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE--VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + + Q+ E  VCA  + +P   +       LIIWDE  M  +Y  EA+D + KD++ +++PFGG C+LM GD+RQ+ PV+  GT + +V  +  SSHLW+H
Sbjct: 1075 TAHSRFAIPI-QVNEFSVCAIKQNSPLANLIQSA--KLIIWDEAPMIQRYCIEAVDRSFKDIMHSNKPFGGKCMLMGGDFRQILPVIPKGTRAVVVNASISSSHLWRH 1179
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A481F3 (uncharacterized protein LOC114712509 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A481F3)

HSP 1 Score: 85.9 bits (211), Expect = 5.350e-17
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE--VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + + Q+ E  VC   + +P   +   T   LIIWDE  M  +Y  EA D TLKD++ ++ PFGG C++M GD+RQ+ PV+  GT + IV  +  SS+LW H
Sbjct: 1124 TAHSRFAIPI-QITESSVCGIKQNSPLANLIKST--KLIIWDEAPMVQRYCIEAFDRTLKDIMHSNLPFGGKCIVMGGDFRQILPVIPKGTRATIVNASINSSYLWNH 1228
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.980e-17
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKEVCATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + L + +     A   ++   +R        LI+WDEI MS ++S EAL+ TL+DL+ ND   GG  VL+SGD RQ+ PV+K G P+E ++ + +SS LW H
Sbjct:   46 TAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPH 152
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0007F026E6 (uncharacterized protein LOC108226331 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F026E6)

HSP 1 Score: 85.5 bits (210), Expect = 7.250e-17
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE-VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKN------DRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS +H+ +    E  C     +P  ++  +T  SLIIWDE  M+ K+  EALD +L+D+L+       D+PFGG  ++  GD+RQ+ PV+  GT  EI++ + +SS+LW H
Sbjct:  964 TAHSRFHIPLDITAESTCEIRHGSPLAKLLLKT--SLIIWDEAPMTNKFCFEALDKSLRDILRTRFEHSTDKPFGGLTIVCGGDFRQILPVVPKGTKDEIIDASLISSYLWPH 1074
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A39FBE (uncharacterized protein LOC114760309 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A39FBE)

HSP 1 Score: 85.1 bits (209), Expect = 9.940e-17
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE-VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + +   +E +C  S  +P   +   T   L IWDE  M  +Y  EA+D T KD++K D PFGG CV+M GD+RQ+ PV+  G  ++IV+ +  SS LW H
Sbjct: 1131 TAHSRFAIPIDITEESMCNISHNSPMSNLIRNT--KLFIWDEAPMVRRYCIEAVDRTFKDIMKCDHPFGGKCVVMGGDFRQILPVVPKGGRADIVDASINSSELWNH 1235
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A57B60 (uncharacterized protein LOC114726768 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A57B60)

HSP 1 Score: 85.1 bits (209), Expect = 1.010e-16
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE-VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + +   +E +C  S  +P   +   T   L IWDE  M  +Y  EA+D T KD++K D PFGG CV+M GD+RQ+ PV+  G  ++IV+ +  SS LW H
Sbjct: 1616 TAHSRFAIPIDITEESMCNISHNSPMSNLIRNT--KLFIWDEAPMVRRYCIEAVDRTFKDIMKCDHPFGGKCVVMGGDFRQILPVVPKGGRADIVDASINSSELWNH 1720
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BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A50445 (uncharacterized protein LOC114712429 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A50445)

HSP 1 Score: 84.0 bits (206), Expect = 2.510e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE--VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + + Q+ E  VC   + +P   +   T   LIIWDE  M  ++  EA D TLKD++ ++ PFGG CVLM GD+RQ+ PV+  GT ++IV     SS+LW++
Sbjct: 1074 TAHSRFAIPI-QVNEDSVCNIKQNSPLANLIIAT--KLIIWDEAPMVQRFCIEAFDRTLKDIMHSNHPFGGKCVLMGGDFRQILPVIPRGTRADIVNACINSSYLWEY 1178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI0010A354B4 (uncharacterized protein LOC114756596 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A354B4)

HSP 1 Score: 83.2 bits (204), Expect = 4.120e-16
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKE--VCATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS + + + Q+ E  VC   + +    +   T   LIIWDE  M  +Y  EA D TLKD++ ++ PFGG C++M GD+RQ+ PV+  GT + IV  +  SS+LW H
Sbjct:  298 TAHSRFAIPI-QITESSVCGIKQNSALANLIKST--KLIIWDEAPMVQRYCIEAFDRTLKDIMHSNAPFGGKCIVMGGDFRQILPVIPKGTRATIVNASINSSYLWNH 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Match: UPI00053FF0F2 (uncharacterized protein LOC104901240 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF0F2)

HSP 1 Score: 83.2 bits (204), Expect = 4.390e-16
Identity = 40/109 (36.70%), Postives = 71/109 (65.14%), Query Frame = 2 
Query:   62 TLHSSYHLVM*QLKEVCATSRLNPRERMSSRTPL---SLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 379
            T HS++ L +    +  + S  +  +R  + T L   ++IIWDE  M+ +Y  EA+D +L+DL++ND PFGG  ++  GD+RQV PV++ GT +++++ +F+ S +W+H
Sbjct:  249 TSHSTFQLPL----QPDSNSTCSFTKRSKTATILKHYTIIIWDEAPMTHRYQFEAVDRSLRDLMENDLPFGGKIIVFGGDFRQVLPVVRNGTRTQMIDASFVKSPIWRH 353
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92762.20869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V2_9PHAE8.810e-2259.15ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI0010A34E831.540e-1740.74uncharacterized protein LOC114724484 n=1 Tax=Proso... [more]
UPI0010A481F35.350e-1741.67uncharacterized protein LOC114712509 n=3 Tax=Proso... [more]
A0A6H5JNR7_9PHAE5.980e-1741.12ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI0007F026E67.250e-1738.94uncharacterized protein LOC108226331 n=1 Tax=Daucu... [more]
UPI0010A39FBE9.940e-1741.12uncharacterized protein LOC114760309 n=1 Tax=Proso... [more]
UPI0010A57B601.010e-1641.12uncharacterized protein LOC114726768 n=2 Tax=Proso... [more]
UPI0010A504452.510e-1641.67uncharacterized protein LOC114712429 n=1 Tax=Proso... [more]
UPI0010A354B44.120e-1640.74uncharacterized protein LOC114756596 n=1 Tax=Proso... [more]
UPI00053FF0F24.390e-1636.70uncharacterized protein LOC104901240 n=1 Tax=Beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92762contigEcto-sp13_S_contig92762:3..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score82.4
Seed ortholog evalue1e-13
Seed eggNOG ortholog161934.XP_010666811.1
Model size379
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GC0A@35493,COG0507@1,KOG0987@2759
EC3.6.4.12
Cds size237
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.2017424-CDS-Ecto-sp13_S_contig92762:2..2391681464198.2017424-CDS-Ecto-sp13_S_contig92762:2..239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92762 3..239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.2140486-UTR-Ecto-sp13_S_contig92762:239..3811681464198.2140486-UTR-Ecto-sp13_S_contig92762:239..381Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig92762 240..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92762.20869.1prot_Ecto-sp13_S_contig92762.20869.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92762 3..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92762.20869.1

>prot_Ecto-sp13_S_contig92762.20869.1 ID=prot_Ecto-sp13_S_contig92762.20869.1|Name=mRNA_Ecto-sp13_S_contig92762.20869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MSSRTPLSLIIWDEIVMSGKYSPEALDSTLKDLLKNDRPFGGTCVLMSGD
WRQVAPVLKFGTPSEIVEHAFLSSHLWKH
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mRNA from alignment at Ecto-sp13_S_contig92762:3..381-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92762.20869.1 ID=mRNA_Ecto-sp13_S_contig92762.20869.1|Name=mRNA_Ecto-sp13_S_contig92762.20869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92762:3..381- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGTGCGCAGCATCCACCGGCATAGCTGCGCTGATATTGCCGGGAGG
GCTGATAGCTCACTCTACATTCAAGTTACCATTTGGTGATGTAGCAGTTG
AAGGAAGTGTGTGCAACGTCAAGGCTGAATCCGAGAGAGCGCATGTCCTC
AAGAACGCCTCTCTCACTCATTATATGGGACGAGATTGTTATGAGCGGCA
AATACAGCCCAGAAGCACTAGATTCGACGCTCAAAGACCTGTTGAAAAAC
GATCGACCTTTCGGGGGGACGTGTGTCCTCATGTCAGGAGATTGGCGTCA
AGTTGCGCCCGTACTCAAATTCGGCACTCCATCAGAAATTGTAGAACACG
CTTTTCTCTCGTCGCATTTATGGAAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92762:3..381-

>mRNA_Ecto-sp13_S_contig92762.20869.1 ID=mRNA_Ecto-sp13_S_contig92762.20869.1|Name=mRNA_Ecto-sp13_S_contig92762.20869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92762:3..381- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCAAGAACGCCTCTCTCACTCATTATATGGGACGAGATTGTTAT
GAGCGGCAAATACAGCCCAGAAGCACTAGATTCGACGCTCAAAGACCTGT
TGAAAAACGATCGACCTTTCGGGGGGACGTGTGTCCTCATGTCAGGAGAT
TGGCGTCAAGTTGCGCCCGTACTCAAATTCGGCACTCCATCAGAAATTGT
AGAACACGCTTTTCTCTCGTCGCATTTATGGAAACAC
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