mRNA_Ecto-sp13_S_contig92711.20864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92711.20864.1
Unique NamemRNA_Ecto-sp13_S_contig92711.20864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Match: UPI0018733534 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018733534)

HSP 1 Score: 90.1 bits (222), Expect = 4.530e-21
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVTAAATTAGLWRMKPWTLTAFRAWGAVCLALIIAF 249
            KRPLG T+LSL M WLTLSAIGN A  L+P    P P      A+AY  TA A   GLWRMK W LTAFRAWG V L L++ F
Sbjct:   13 KRPLGATLLSLLMGWLTLSAIGNAA-FLMPVAGFPAP--MIALALAYAATAGAAAVGLWRMKSWGLTAFRAWGVVLLCLMVGF 92
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BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Match: M1PKP6_DESSD (Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) TaxID=1167006 RepID=M1PKP6_DESSD)

HSP 1 Score: 59.7 bits (143), Expect = 1.740e-9
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:    1 KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVTAAATTAGLWRMKPWTLTAFRAWGAVCLA 234
            KRP G T++SL + W  + A  N A+ L   +   +    A+ A +YGVTA A+T GLW+ K W   +F  W  + +A
Sbjct:    2 KRPTGFTVISLILGWFAIGAFANGAMQLNAEHGSKI---MAILAFSYGVTALASTVGLWKFKKWAYHSFLVWSLIVVA 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00187335344.530e-2159.04hypothetical protein n=1 Tax=Pelagibius sp. NBU259... [more]
M1PKP6_DESSD1.740e-937.18Uncharacterized protein n=1 Tax=Desulfocapsa sulfe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92711contigEcto-sp13_S_contig92711:183..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size258
Hectar predicted targeting categorysignal peptide
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.9283872-CDS-Ecto-sp13_S_contig92711:182..4401681464197.9283872-CDS-Ecto-sp13_S_contig92711:182..440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92711 183..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92711.20864.1prot_Ecto-sp13_S_contig92711.20864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92711 183..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92711.20864.1

>prot_Ecto-sp13_S_contig92711.20864.1 ID=prot_Ecto-sp13_S_contig92711.20864.1|Name=mRNA_Ecto-sp13_S_contig92711.20864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVT
AAATTAGLWRMKPWTLTAFRAWGAVCLALIIAFFVI
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mRNA from alignment at Ecto-sp13_S_contig92711:183..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92711.20864.1 ID=mRNA_Ecto-sp13_S_contig92711.20864.1|Name=mRNA_Ecto-sp13_S_contig92711.20864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92711:183..440- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGGCCACTGGGGATCACCATCCTCAGTCTGGCAATGGCTTGGCTAAC
GTTATCCGCAATTGGCAACACGGCGGTCATCCTTATTCCCGCTTACAACC
ACCCCCTTCCGGATTACTTCGCCGTATTCGCGATTGCTTACGGCGTCACA
GCGGCAGCGACCACGGCCGGGCTGTGGCGCATGAAGCCCTGGACCTTGAC
CGCCTTCAGGGCTTGGGGCGCAGTGTGTTTGGCGCTGATCATCGCTTTCT
TCGTAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92711:183..440-

>mRNA_Ecto-sp13_S_contig92711.20864.1 ID=mRNA_Ecto-sp13_S_contig92711.20864.1|Name=mRNA_Ecto-sp13_S_contig92711.20864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92711:183..440- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGGCCACTGGGGATCACCATCCTCAGTCTGGCAATGGCTTGGCTAAC
GTTATCCGCAATTGGCAACACGGCGGTCATCCTTATTCCCGCTTACAACC
ACCCCCTTCCGGATTACTTCGCCGTATTCGCGATTGCTTACGGCGTCACA
GCGGCAGCGACCACGGCCGGGCTGTGGCGCATGAAGCCCTGGACCTTGAC
CGCCTTCAGGGCTTGGGGCGCAGTGTGTTTGGCGCTGATCATCGCTTTCT
TCGTAATC
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