prot_Ecto-sp13_S_contig92711.20864.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig92711.20864.1
Unique Nameprot_Ecto-sp13_S_contig92711.20864.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length86
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Match: UPI0018733534 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018733534)

HSP 1 Score: 90.1 bits (222), Expect = 4.530e-21
Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 0 
Query:    1 KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVTAAATTAGLWRMKPWTLTAFRAWGAVCLALIIAF 83
            KRPLG T+LSL M WLTLSAIGN A  L+P    P P      A+AY  TA A   GLWRMK W LTAFRAWG V L L++ F
Sbjct:   13 KRPLGATLLSLLMGWLTLSAIGNAA-FLMPVAGFPAP--MIALALAYAATAGAAAVGLWRMKSWGLTAFRAWGVVLLCLMVGF 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Match: M1PKP6_DESSD (Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) TaxID=1167006 RepID=M1PKP6_DESSD)

HSP 1 Score: 59.7 bits (143), Expect = 1.740e-9
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 0 
Query:    1 KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVTAAATTAGLWRMKPWTLTAFRAWGAVCLA 78
            KRP G T++SL + W  + A  N A+ L   +   +    A+ A +YGVTA A+T GLW+ K W   +F  W  + +A
Sbjct:    2 KRPTGFTVISLILGWFAIGAFANGAMQLNAEHGSKI---MAILAFSYGVTALASTVGLWKFKKWAYHSFLVWSLIVVA 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92711.20864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00187335344.530e-2159.04hypothetical protein n=1 Tax=Pelagibius sp. NBU259... [more]
M1PKP6_DESSD1.740e-937.18Uncharacterized protein n=1 Tax=Desulfocapsa sulfe... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..86
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..85
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.526
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 68..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92711contigEcto-sp13_S_contig92711:183..440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92711.20864.1mRNA_Ecto-sp13_S_contig92711.20864.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig92711 183..440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig92711.20864.1 ID=prot_Ecto-sp13_S_contig92711.20864.1|Name=mRNA_Ecto-sp13_S_contig92711.20864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
KRPLGITILSLAMAWLTLSAIGNTAVILIPAYNHPLPDYFAVFAIAYGVT
AAATTAGLWRMKPWTLTAFRAWGAVCLALIIAFFVI
back to top