mRNA_Ecto-sp13_S_contig9168.20738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A6H5JVQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ3_9PHAE) HSP 1 Score: 526 bits (1354), Expect = 4.190e-184 Identity = 303/332 (91.27%), Postives = 306/332 (92.17%), Query Frame = 1
Query: 1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYE--------------TQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 954
+AKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQD+LYE TQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALW SSTSGT ARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVG+RFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXX LASAS YSNTHTP NRTV
Sbjct: 162 EAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDALYEVRSLLCMGATQSAVTQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWSSSTSGTPARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGVRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASASAYSNTHTPANRTV 493
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 1.520e-182 Identity = 312/318 (98.11%), Postives = 316/318 (99.37%), Query Frame = 1
Query: 1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 954
+AKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRS D+LYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPR+GSLEFDAAATATDSLEPHWLLELCIQACISATDHE+PTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV
Sbjct: 1102 EAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSKHDALYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRVGSLEFDAAATATDSLEPHWLLELCIQACISATDHEVPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 1419
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A7R9U2A1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2A1_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.680e-31 Identity = 85/243 (34.98%), Postives = 129/243 (53.09%), Query Frame = 1
Query: 31 INSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLAL--WCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEI--PTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDV 747
+N+++A F R+ +VHP A R +Y+RV++ S+ + + + L L+MYDH V +NSP++ P GV + R A+ + + S RP S+PS GV GS E A + HWL EL + +S P VR +A+LR+L V HTYD RYQD SR+R+A MYLPL+ V +L+ P RR++LA L+Y+LQDAP + +++++
Sbjct: 732 LNAAMADFFREFMTLVHPEQAGRALRAYLRVLKKHH-SVEDFELRIVLLENLSMYDHFVVINSPQVHPGGVTIPSSRVRAIVTGLAFSDEASVRPRSLPSADDGVITS----------GSSEISA------EVPNHWLAELVVNEVMSVVSLHTAEPHVREHAVAVLRQLFVGHTYDPRYQDDLSRRRIANMYLPLLGKTVDSVERLENYAPYSVTRRDLLACLVYLLQDAPANCMHAVYREM 957
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: T1J9Y0_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J9Y0_STRMM) HSP 1 Score: 67.4 bits (163), Expect = 1.260e-8 Identity = 75/312 (24.04%), Postives = 118/312 (37.82%), Query Frame = 1
Query: 1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQ----FTLGFLRRLAMYDHVVALNSP---RLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLI--------------------------------HH---------------IAAKVSKLDAMDPREPER---------REMLATLLYVLQDAPEALLREMWKDV 747
+ K + +N+SLA F+ DLFA++ + L +Y + + + SL + L FLR + ++H + LN P L PSG + S S TS + +S S L R + A TD + H+L+ L + + + PTV + + +R L H D RY D RVAA+YLPL+ HH I K D+MDP + R R +L L+VL++ +LL++ W ++
Sbjct: 1661 EVKDMKFIQTLNTSLAFFLFDLFAIMDRGYVFSLIKTYCKQISAKISSLPDAAHLIALKLEFLRIVCSHEHYIPLNLPFGAPLTPSGASSPCP-------SVASSTSQSSF------------ISSSTLTER-----GNFAELTTDFRQQHFLVGLILSDLATVLEIHNPTVHIKAVNTVRNLLTCHDSDPRYTDAECTSRVAALYLPLVGIVMDALPQLYDWHSDHRGRPLSNFAGNSDYDHHNNFNQSVAMAIAGGTIYMKTVSHDSMDPFQQSRKSQLNAETTRHLLVCFLWVLKNVEVSLLKQWWSEL 1948
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A7S2KPM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KPM0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.580e-6 Identity = 69/284 (24.30%), Postives = 102/284 (35.92%), Query Frame = 1
Query: 31 INSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYET----------------QFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLA-------------------LLR-ELQVFHTY-------------DYRYQDGYSRQRVAAMYL-PLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLRE 732
I++ + F LFA+VHP+ A L +Y +++ +D Q L + RLA LN P +K + A W + S TS R +R ++ + A WL +L + C+S T+ + A LLR E FH+ D+R+Q RVAAM + PL+ VS L MD + R + +LYVLQ+ PEALLR+
Sbjct: 676 ISTHVMDFFIGLFALVHPSQVATLVKAYFNILKECEDPQRRAPDSTDKFRLRRIKCSQQIRLYAVERLATMSRFTGLNFPLKYSGSYPKKNQA--ANWMNQRSSTSQR----------------NDVIRDYFNRVDRNPAT--------FWLADLLMSHCLSICHRSCKTIIVEAKAQSNALRFGRGVEGSLSREELLRIESVAFHSILCSYELLIKRHASDFRFQTAACNTRVAAMVMGPLLEQSVESVSVLTRMDAKHKVRCLWILCILYVLQEGPEALLRD 933 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9168.20738.1 >prot_Ecto-sp13_S_contig9168.20738.1 ID=prot_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYback to top mRNA from alignment at Ecto-sp13_S_contig9168:1837..5997- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9168.20738.1 ID=mRNA_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9168:1837..5997- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9168:1837..5997- >mRNA_Ecto-sp13_S_contig9168.20738.1 ID=mRNA_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9168:1837..5997- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |