mRNA_Ecto-sp13_S_contig9168.20738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9168.20738.1
Unique NamemRNA_Ecto-sp13_S_contig9168.20738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A6H5JVQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ3_9PHAE)

HSP 1 Score: 526 bits (1354), Expect = 4.190e-184
Identity = 303/332 (91.27%), Postives = 306/332 (92.17%), Query Frame = 1
Query:    1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYE--------------TQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 954
            +AKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQD+LYE              TQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALW SSTSGT ARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVG+RFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXX        LASAS YSNTHTP NRTV
Sbjct:  162 EAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDALYEVRSLLCMGATQSAVTQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWSSSTSGTPARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGVRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASASAYSNTHTPANRTV 493          
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 1.520e-182
Identity = 312/318 (98.11%), Postives = 316/318 (99.37%), Query Frame = 1
Query:    1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 954
            +AKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRS  D+LYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPR+GSLEFDAAATATDSLEPHWLLELCIQACISATDHE+PTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV
Sbjct: 1102 EAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSKHDALYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRVGSLEFDAAATATDSLEPHWLLELCIQACISATDHEVPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVGIRFFRMFGRKANAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXAGTFSSESLASASPYSNTHTPGNRTV 1419          
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A7R9U2A1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2A1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.680e-31
Identity = 85/243 (34.98%), Postives = 129/243 (53.09%), Query Frame = 1
Query:   31 INSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLAL--WCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEI--PTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDV 747
            +N+++A F R+   +VHP  A R   +Y+RV++    S+ + +  +  L  L+MYDH V +NSP++ P GV   + R  A+    + +   S RP S+PS   GV             GS E  A       +  HWL EL +   +S        P VR   +A+LR+L V HTYD RYQD  SR+R+A MYLPL+      V +L+   P    RR++LA L+Y+LQDAP   +  +++++
Sbjct:  732 LNAAMADFFREFMTLVHPEQAGRALRAYLRVLKKHH-SVEDFELRIVLLENLSMYDHFVVINSPQVHPGGVTIPSSRVRAIVTGLAFSDEASVRPRSLPSADDGVITS----------GSSEISA------EVPNHWLAELVVNEVMSVVSLHTAEPHVREHAVAVLRQLFVGHTYDPRYQDDLSRRRIANMYLPLLGKTVDSVERLENYAPYSVTRRDLLACLVYLLQDAPANCMHAVYREM 957          
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: T1J9Y0_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J9Y0_STRMM)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-8
Identity = 75/312 (24.04%), Postives = 118/312 (37.82%), Query Frame = 1
Query:    1 KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYETQ----FTLGFLRRLAMYDHVVALNSP---RLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYLPLI--------------------------------HH---------------IAAKVSKLDAMDPREPER---------REMLATLLYVLQDAPEALLREMWKDV 747
            + K +     +N+SLA F+ DLFA++   +   L  +Y + + +   SL +        L FLR +  ++H + LN P    L PSG +           S  S TS   +            +S S L  R      + A   TD  + H+L+ L +    +  +   PTV +  +  +R L   H  D RY D     RVAA+YLPL+                                HH               I  K    D+MDP +  R         R +L   L+VL++   +LL++ W ++
Sbjct: 1661 EVKDMKFIQTLNTSLAFFLFDLFAIMDRGYVFSLIKTYCKQISAKISSLPDAAHLIALKLEFLRIVCSHEHYIPLNLPFGAPLTPSGASSPCP-------SVASSTSQSSF------------ISSSTLTER-----GNFAELTTDFRQQHFLVGLILSDLATVLEIHNPTVHIKAVNTVRNLLTCHDSDPRYTDAECTSRVAALYLPLVGIVMDALPQLYDWHSDHRGRPLSNFAGNSDYDHHNNFNQSVAMAIAGGTIYMKTVSHDSMDPFQQSRKSQLNAETTRHLLVCFLWVLKNVEVSLLKQWWSEL 1948          
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Match: A0A7S2KPM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KPM0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.580e-6
Identity = 69/284 (24.30%), Postives = 102/284 (35.92%), Query Frame = 1
Query:   31 INSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLYET----------------QFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTSARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELCIQACISATDHEIPTVRMSGLA-------------------LLR-ELQVFHTY-------------DYRYQDGYSRQRVAAMYL-PLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLRE 732
            I++ +  F   LFA+VHP+  A L  +Y  +++  +D                     Q  L  + RLA       LN P        +K +   A W +  S TS R                   +R     ++ + A          WL +L +  C+S       T+ +   A                   LLR E   FH+              D+R+Q      RVAAM + PL+      VS L  MD +   R   +  +LYVLQ+ PEALLR+
Sbjct:  676 ISTHVMDFFIGLFALVHPSQVATLVKAYFNILKECEDPQRRAPDSTDKFRLRRIKCSQQIRLYAVERLATMSRFTGLNFPLKYSGSYPKKNQA--ANWMNQRSSTSQR----------------NDVIRDYFNRVDRNPAT--------FWLADLLMSHCLSICHRSCKTIIVEAKAQSNALRFGRGVEGSLSREELLRIESVAFHSILCSYELLIKRHASDFRFQTAACNTRVAAMVMGPLLEQSVESVSVLTRMDAKHKVRCLWILCILYVLQEGPEALLRD 933          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9168.20738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JVQ3_9PHAE4.190e-18491.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBX9_ECTSI1.520e-18298.11Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
A0A7R9U2A1_9STRA1.680e-3134.98Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
T1J9Y0_STRMM1.260e-824.04Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A7S2KPM0_9STRA1.580e-624.30Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9168contigEcto-sp13_S_contig9168:1837..5997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score565.1
Seed ortholog evalue2.1e-158
Seed eggNOG ortholog2880.D8LBX9
Model size954
KEGG koko:K21853
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.memory T cell proliferation
EggNOG OGsKOG1997@1,KOG1997@2759
Cds size954
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9168.20738.1prot_Ecto-sp13_S_contig9168.20738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9168 1837..5997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.365337-CDS-Ecto-sp13_S_contig9168:1836..20461681464188.365337-CDS-Ecto-sp13_S_contig9168:1836..2046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 1837..2046 -
1681464188.376355-CDS-Ecto-sp13_S_contig9168:2491..26081681464188.376355-CDS-Ecto-sp13_S_contig9168:2491..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 2492..2608 -
1681464188.3897922-CDS-Ecto-sp13_S_contig9168:3532..36281681464188.3897922-CDS-Ecto-sp13_S_contig9168:3532..3628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 3533..3628 -
1681464188.3997629-CDS-Ecto-sp13_S_contig9168:4264..43391681464188.3997629-CDS-Ecto-sp13_S_contig9168:4264..4339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 4265..4339 -
1681464188.4112623-CDS-Ecto-sp13_S_contig9168:5026..53291681464188.4112623-CDS-Ecto-sp13_S_contig9168:5026..5329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 5027..5329 -
1681464188.4279208-CDS-Ecto-sp13_S_contig9168:5844..59971681464188.4279208-CDS-Ecto-sp13_S_contig9168:5844..5997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9168 5845..5997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9168.20738.1

>prot_Ecto-sp13_S_contig9168.20738.1 ID=prot_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
KAKTLGHADIINSSLAGFIRDLFAVVHPAHAARLCGSYIRVMRSSQDSLY
ETQFTLGFLRRLAMYDHVVALNSPRLIPSGVNRKTERDLALWCSSTSGTS
ARPYSMPSGGYGVGLGLSGSALRPRLGSLEFDAAATATDSLEPHWLLELC
IQACISATDHEIPTVRMSGLALLRELQVFHTYDYRYQDGYSRQRVAAMYL
PLIHHIAAKVSKLDAMDPREPERREMLATLLYVLQDAPEALLREMWKDVG
IRFFRMFGRKANAGGSGSSNGTGTPSPAARRASFSFSSGTGTAGTFSSES
LASASPYSNTHTPGNRTV
back to top

mRNA from alignment at Ecto-sp13_S_contig9168:1837..5997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9168.20738.1 ID=mRNA_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9168:1837..5997- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGAAGACGCTCGGACACGCCGACATCATCAACTCCTCCCTTGCCGG GTTCATCCGAGATCTCTTCGCGGTGGTGCACCCGGCGCACGCAGCGAGAC TGTGCGGGTCCTACATCCGCGTCATGAGGTCGAGTCAAGACTCCCTGTAC GAGGTGCGTCCTTTGTTGTGCAATGGGGGCGACGCAGAGTGCCGGGGGGG GGGGGGTGGTTGTGGGGGGGGTGTTTGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGCGTGTTGGTGTGCGCTGTGTTTGCACGGCGGGTTGGTGCG GATGATGGGTGGGTTGCGTAGCATGTGCTTCGGGTGTGTATGCCCGGTGT GACGTTGGTAACGGTAGCGGCGGTGGTGGTGGTGGGAAGGCTGCTTTCCT GTTTCTTGCCTTTCCTTGATTATTTGATGAGGGTGGTGGTGGGCTGCGGA ATCCCGCCGGTATAGCAAGAGAGCTTGTTTTGCCGTGATAAAAAACAGAG AAGATTCGAAAACGGTGGTACCAAAAGCGGCCGAGGCGAGCAACACAACG GTTCCGTCCCCGCTCCCTTGTACCCCGCCAAAGTATGCCTATTTGTTCTT CCTCCCTGTGATGACTCTCCCCCCCGTTGTTGTTGTTGATGTTGTTCCCC CCCCCTAAAAAAAAACAGACGCAGTTCACCCTCGGCTTCTTGCGGCGGCT GGCGATGTACGACCACGTCGTAGCGCTCAACTCCCCCCGCCTCATCCCCT CCGGGGTGAACCGGAAGACGGAGCGCGACCTGGCCCTCTGGTGTTCGAGC ACCTCGGGCACCTCTGCGCGGCCGTACAGCATGCCCAGCGGGGGCTACGG CGTTGGCCTTGGCCTGTCGGGTTCGGCGCTGCGGCCTCGGTTGGGGTCCC TCGAGTTCGACGCCGCGGCGACGGCGACGGATAGCCTGGAGCCGCACTGG CTGCTGGAACTGTGCATCCAGGTACTGCTGTTGTTCTATTGGTGTGGCCA CATTTGCAGTTCATGTCGTGTTTGTCGTCATTTTGAAAATCGTGTTTCCC GTCTCTACTCAGTACTTCATGCTTGCGTACTGAGCCAAGTGGCATTTACT ACATGTTTTTTTTTCGGCTGGCTCTGCTGGAGCTGTGCATCCAGGCATAA TTGTTTGTTGGTTGTTGTTGTCTTCACATTGGCAGTCGCTGCTATTGTTG TTGTTGTTTCTGCTGTCTTCACGTCGTTCCGGTCTCTACTCCATACCACA CTAGTCCAACTGGTACTACTGCATGCATACAGCAGTACTTCTCTTGTTTT TTCGACCGGGTGGCTGCTGGAGCTGTGGTTCCAGTTGACTAGTTTTTTTT TGTTAAGCCTTGGCTGGTTCGTGTAGCTGTGGATACAGGTAGTAAATGCC TTTTTTATCTTCGGCCGGCGCGTTGGTCGGTTGGTGGCTCTGAATTTGAC GGCAGGCACCTCAAGATATACACCCCAGCATTCGGAGAGAAGGTTCGCGC GTGGTCGCTGCCTAAGTGATTTCAAGGCACGAAAATAAAACATGGTGTTA TTTGAAGGTTGTCGCCGAAGTGCAAGTGCCTGACTAGGCGCAAAGATGAG GAAACGAACAACATTCTTTTTGTTTTTCCCCAAATTTTATTTGGTGTTTT CTACGCAGGCATGCATATCTGCGACGGACCATGAGATTCCGACGGTGCGC ATGTCGGGTCTGGCCCTTCTAAGAGAGCTCCAGGTGAGAGATAAGCGGTC GTCGACCTTCTTTCCGTGTGTACCCCCCTCTCCCTCTCACGTGCGCTGGT GTTTTTGTGTTGAAAGGTATAATATCGTCTCGCCCTAGCCCCCCCCCCCC AATGTGAAACGTGGGGATGCGAGGTCAAGGATCTAACGACGTACTACGGC ATGCGTTGACTTGGGCACACACACGCGCACACAGTTTTGTTGTCCCCGTT GAACGAAAGGCTGCTATCGTTCTTGCCATTTGTCACGCCTGTTGGCGAGG TCAATTCGAAGTAGAGAAACGCGCACGCTGTCGAGAGGCCCCGGGGCTAG ACCGCGAATTGATTTCGCGTTTTCGGTTTGTTCCGCCTCAAGAATCATAA GCTGTCGTTAGTTTAATTGGTCGACCGGTTGGTGAAGTAGATTCCAGTTA AAGGAACTCACATATACAAACACGAACACTGTCCCGACCGCATCTCTTGT TTCTTGCCGCTTTTTCCGAGGCTTCTTTTTTTGGGGCGGTGAGTCTTCGC TTCCCAACAGGCGCATCTGCTTGCTTCAGTTGAATGCCAGTGCTTTTGTA ACACCCAACTTTCGAACTGCTGGCAGGCTTTTCCTCTCTCACAACAATCA TTTTGTCCGATTTTTACAGGTATTCCACACGTACGACTACAGGTACCAGG ACGGCTACAGCCGGCAGCGTGTGGCGGCGATGTACCTGCCCCTTATCCAC CACATCGCGGCCAAGGTGTGTAGTCAACCAACCCCCAAAAAAACAATCGG GCCCTTGCCTTGCGATCCACAGAAAAAAAAAACGCGGCTGCAGCAGCAGT AGATTTCTTCTTTTCTAAGAGTTCCATAGTGTGGAAACCAGGATATTAGA ATTCTTCGCCAAAGTGCAACAACAAAAGCGAATTACCTACGGTGATGAGC GGGTAATCGATCCTAATCAGCCCTGAAGGGACCCTTGCTCGGGTAACAGA GAAAGAGTTTTCTCAAAAGCCTAATTTTTAGCATTAAGCGTATTTTCCTT CTATAGCTTGAAAGAGAGAGACTTTTGTGCTTGTTTTTTGTTCTGTGTCT CCGTATGTTGTACCGACCACCTTTCCACCGGTACAGTACCGGGTCTTCGA AAGAACAAAAATAGTCGAAAGAGTGCTGTAATTCCGCCGTCGTGACGGTA TTTACTCGTCCCTGCGTTTTTTTTTTCTGGAGTTCCATCTTCGTTCCGAC AGGTGGTTGGTTGCCTCTTGTTTCTTGCTTTCTTTTCTTCATTGTTCGAT ATTCTTGCTCTCTCCCCTTCATCTGTGCCATGTTCTGGAAGTGGTAATGC ACTTTGGATGTTCCGCTTGTGTGTGTGCTCACGGATGGAACTCCTACCGG GAACAAATGGTGTGAACGCTGAGTTTTGTAGAGTGATGCAACAACAAGAA AACGTTTGACGGCATATGCGTCATTTGATCATCAGGTATCGAAGTTGGGA CGTGGTGGGTCCCAGAGAATGCTGCGAGCGCTGATGTAATGTGATGAACG AAGCAATTGTTCTGTTGGCATGTATGCATCATTTGATCGTCAGGTGTCGA AGCTGGGACGCGATGGATCGCAGAGAACACCGTGAGCGCTCATCTGATGT AAAGTGACTCTTAACCAGAAACAAATGTTGCATCATCAGGTGTCGAAGCT GGACGCGATGGATCCCAGAGAACCGGAGAGACGCGAGATGCTGGCGACGC TGCTGTACGTGCTGCAAGACGCGCCAGAGGCCCTTCTCCGGGAGATGTGG AAGGACGTACGTAACACCCTCACACCACAGCAGGCAGCGGGTTTGGGCGT TGGCCATGGGTCCTTCATTTTCCTTAGTCTTTTGTCTCCATAGCTCGGGC ACGTCTGTCGTCGTTTCGACATGATTTTTACTTTGACCGTTGTTGTCGTT TTGGTCGGATGCTTGTGACTGCTGTGAGCGTCGTTGTTGTGCATGTTGAA TATGTATCAGCCACTGCTCGGACTCAGGCAGCACCCAACAGCAGTACCTC TCTATCCCCTCTGCGGTGGCACATCACGTGATTTTTTTTTTTTTCCTCGG TGTCCCGTCCGTTTCCCGTCGCTCCCAGCATGTACTCTGCTGTACCCCCC GTACGGCAGTCTTGCCTCTCTGATTAACCAGCTAAGTAAGAGCCTCTTCC TCTCCTCTCACCACTCGTCCCCCTTCCCTCCTCCCCGTCAAAAAAATGCA GGTTGGCATTCGGTTCTTCCGCATGTTCGGGCGGAAGGCGAACGCCGGCG GCAGCGGCAGCTCCAACGGGACCGGCACGCCGTCCCCCGCGGCCCGCCGG GCGTCCTTCAGCTTCTCGTCCGGCACGGGCACAGCGGGCACCTTCTCGTC GGAGTCGCTGGCTTCCGCGTCCCCTTACAGTAACACGCACACGCCGGGAA ACCGCACGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9168:1837..5997-

>mRNA_Ecto-sp13_S_contig9168.20738.1 ID=mRNA_Ecto-sp13_S_contig9168.20738.1|Name=mRNA_Ecto-sp13_S_contig9168.20738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9168:1837..5997- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGAAGACGCTCGGACACGCCGACATCATCAACTCCTCCCTTGCCGG
GTTCATCCGAGATCTCTTCGCGGTGGTGCACCCGGCGCACGCAGCGAGAC
TGTGCGGGTCCTACATCCGCGTCATGAGGTCGAGTCAAGACTCCCTGTAC
GAGACGCAGTTCACCCTCGGCTTCTTGCGGCGGCTGGCGATGTACGACCA
CGTCGTAGCGCTCAACTCCCCCCGCCTCATCCCCTCCGGGGTGAACCGGA
AGACGGAGCGCGACCTGGCCCTCTGGTGTTCGAGCACCTCGGGCACCTCT
GCGCGGCCGTACAGCATGCCCAGCGGGGGCTACGGCGTTGGCCTTGGCCT
GTCGGGTTCGGCGCTGCGGCCTCGGTTGGGGTCCCTCGAGTTCGACGCCG
CGGCGACGGCGACGGATAGCCTGGAGCCGCACTGGCTGCTGGAACTGTGC
ATCCAGGCATGCATATCTGCGACGGACCATGAGATTCCGACGGTGCGCAT
GTCGGGTCTGGCCCTTCTAAGAGAGCTCCAGGTATTCCACACGTACGACT
ACAGGTACCAGGACGGCTACAGCCGGCAGCGTGTGGCGGCGATGTACCTG
CCCCTTATCCACCACATCGCGGCCAAGGTGTCGAAGCTGGACGCGATGGA
TCCCAGAGAACCGGAGAGACGCGAGATGCTGGCGACGCTGCTGTACGTGC
TGCAAGACGCGCCAGAGGCCCTTCTCCGGGAGATGTGGAAGGACGTTGGC
ATTCGGTTCTTCCGCATGTTCGGGCGGAAGGCGAACGCCGGCGGCAGCGG
CAGCTCCAACGGGACCGGCACGCCGTCCCCCGCGGCCCGCCGGGCGTCCT
TCAGCTTCTCGTCCGGCACGGGCACAGCGGGCACCTTCTCGTCGGAGTCG
CTGGCTTCCGCGTCCCCTTACAGTAACACGCACACGCCGGGAAACCGCAC
GGTA
back to top