mRNA_Ecto-sp13_S_contig91390.20706.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91390.20706.1
Unique NamemRNA_Ecto-sp13_S_contig91390.20706.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91390.20706.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.590e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:   22 SQLPTVLRLWLDVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQAR 240
            SQLPTVLRLWL+VAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAA PGETRDNRELIKQAR
Sbjct: 1307 SQLPTVLRLWLEVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAAGPGETRDNRELIKQAR 1379
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BLAST of mRNA_Ecto-sp13_S_contig91390.20706.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.230e-37
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   22 SQLPTVLRLWLDVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQ 234
            SQLPTVLRLWL+VAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQ
Sbjct: 1303 SQLPTVLRLWLEVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQ 1373
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BLAST of mRNA_Ecto-sp13_S_contig91390.20706.1 vs. uniprot
Match: A0A098VQT2_9MICR (TFIIS N-terminal domain-containing protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VQT2_9MICR)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-8
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   22 SQLPTVLRLWLDVAPDGGPFLPPPQ-RASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNREL 225
            +++   +RLWL+  PDG   LP    R S+L +L  LP++K HL+ESG+GK+V+ +   P ETR+N++L
Sbjct:  144 NRILDAIRLWLEPYPDGS--LPSIDVRKSILHILAQLPIEKIHLKESGLGKVVMYLYKSPDETRENKKL 210
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BLAST of mRNA_Ecto-sp13_S_contig91390.20706.1 vs. uniprot
Match: A0A1Y1WJ92_9FUNG (TFIIS N-terminal domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ92_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 5.950e-5
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   40 LRLWLDVAPDGGPFLPPPQ-RASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQ 234
            LRLWL+   DG   LP    + +LL +L  LP+++ HLRESGIGK+++ M+  P     NR + +Q
Sbjct:  187 LRLWLEPLDDGS--LPALDIQNALLDILGKLPIRRDHLRESGIGKIIMFMSKCPRIPERNRRVCEQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91390.20706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6K9_9PHAE6.590e-3897.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY3_ECTSI1.230e-3798.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A098VQT2_9MICR1.030e-843.48TFIIS N-terminal domain-containing protein n=1 Tax... [more]
A0A1Y1WJ92_9FUNG5.950e-542.42TFIIS N-terminal domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91390contigEcto-sp13_S_contig91390:6..266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score143.7
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D7FVY3
Model size261
KEGG koko:K12813,ko:K17586
KEGG Pathwayko03040,map03040
Hectar predicted targeting categorysignal peptide
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008623,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016590,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031010,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070063,GO:0070603,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.DNA topoisomerase binding
EggNOG OGsKOG4430@1,KOG4430@2759
EC3.6.4.13
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.7098649-CDS-Ecto-sp13_S_contig91390:5..2661681464185.7098649-CDS-Ecto-sp13_S_contig91390:5..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91390 6..266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91390.20706.1prot_Ecto-sp13_S_contig91390.20706.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91390 6..266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91390.20706.1

>prot_Ecto-sp13_S_contig91390.20706.1 ID=prot_Ecto-sp13_S_contig91390.20706.1|Name=mRNA_Ecto-sp13_S_contig91390.20706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
WWWWWWLSQLPTVLRLWLDVAPDGGPFLPPPQRASLLKVLMVLPVQKSHL
RESGIGKLVVAMAADPGETRDNRELIKQARSKDQHF*
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mRNA from alignment at Ecto-sp13_S_contig91390:6..266-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91390.20706.1 ID=mRNA_Ecto-sp13_S_contig91390.20706.1|Name=mRNA_Ecto-sp13_S_contig91390.20706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91390:6..266- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTGGTGGTGGTGGTGGCTGTCCCAGCTCCCGACGGTCCTCCGCCTATG
GCTGGATGTAGCACCGGACGGCGGACCATTCCTTCCGCCCCCCCAAAGGG
CGTCCCTGCTCAAGGTGCTCATGGTGCTGCCAGTCCAGAAGTCGCATCTG
CGGGAGAGCGGCATCGGCAAGCTGGTGGTAGCGATGGCGGCCGACCCGGG
AGAGACTCGAGACAACCGGGAGCTGATCAAGCAGGCAAGGAGTAAAGATC
AACATTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91390:6..266-

>mRNA_Ecto-sp13_S_contig91390.20706.1 ID=mRNA_Ecto-sp13_S_contig91390.20706.1|Name=mRNA_Ecto-sp13_S_contig91390.20706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91390:6..266- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTGGTGGTGGTGGTGGCTGTCCCAGCTCCCGACGGTCCTCCGCCTATG
GCTGGATGTAGCACCGGACGGCGGACCATTCCTTCCGCCCCCCCAAAGGG
CGTCCCTGCTCAAGGTGCTCATGGTGCTGCCAGTCCAGAAGTCGCATCTG
CGGGAGAGCGGCATCGGCAAGCTGGTGGTAGCGATGGCGGCCGACCCGGG
AGAGACTCGAGACAACCGGGAGCTGATCAAGCAGGCAAGGAGTAAAGATC
AACATTTTTAG
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