mRNA_Ecto-sp13_S_contig1249.2069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1249.2069.1
Unique NamemRNA_Ecto-sp13_S_contig1249.2069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A6H5L4T2_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T2_9PHAE)

HSP 1 Score: 565 bits (1456), Expect = 4.710e-199
Identity = 281/317 (88.64%), Postives = 292/317 (92.11%), Query Frame = 1
Query:  118 ILCKRQIMTRLMYYLLPLALCRRTVVRGFGLLPPLLSSQCRGDVARPHSQTSRSSCRPMDRVMMTGAFWEGIVQGVGMKTTTSPTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSGEFFP 1068
            +LC RQ+MTRLMY+LL LALCRR VVRGFGLLPPLL SQ RG V      T RSSCRP DRV+MTGAFWEGIVQGVGMKT T PTAKEK PVLICPAQLSVPGDY QMVT LK+RGFPAYCADLTRFGWITGLLPSALSPEY KGELTPANTLKFYYEAIDRALEEIKERHPGQGMHV+GHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLW AVDQTRGLLK INARFPGAHVEGV+YTSVAGTALEGK PGSVEEMLA++SYLPLCGDGGSRGDGIIPLDVAVL+GST+VELPSSKHSG F P
Sbjct:    1 MLCNRQVMTRLMYHLLILALCRRIVVRGFGLLPPLLLSQSRGGV------TPRSSCRPRDRVIMTGAFWEGIVQGVGMKTPTPPTAKEKGPVLICPAQLSVPGDYRQMVTELKKRGFPAYCADLTRFGWITGLLPSALSPEYVKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVIGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWAAVDQTRGLLKYINARFPGAHVEGVRYTSVAGTALEGKLPGSVEEMLAYVSYLPLCGDGGSRGDGIIPLDVAVLEGSTVVELPSSKHSG-FIP 310          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A835ZI81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI81_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.260e-74
Identity = 127/224 (56.70%), Postives = 149/224 (66.52%), Query Frame = 1
Query:  412 LSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPG-SVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSGEFFPHLSR 1080
            LS+P DY  M+     RG   Y A L R GWI GLLPSAL+ +YFKG L P+ TLKFYY+AID+ LE +K +HP +  H+VGHSIGGWVAR WL+E  + ADR  VLSLTTLGTPN  PP D+ L   VDQTRGLLK IN  FP   V GV+YTSV GT    +FP   V+EMLA ISYLPL G     GDGI+P    ++ GS  + LP +KHSG F P   R
Sbjct:   19 LSIPEDYADMIDVFNARGHQVYGAQLQRVGWILGLLPSALTLDYFKGTLQPSKTLKFYYDAIDKGLESLKAQHPDEPFHLVGHSIGGWVARGWLSERASAADRARVLSLTTLGTPNREPPPDSPL-AKVDQTRGLLKFINENFPAGSVPGVKYTSVVGTGTLARFPSLDVQEMLAAISYLPLGGAPDGLGDGIVPWRAGIMDGSESIILPDAKHSG-FVPTAGR 240          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A7S3YIH2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIH2_HETAK)

HSP 1 Score: 236 bits (601), Expect = 3.830e-70
Identity = 114/263 (43.35%), Postives = 169/263 (64.26%), Query Frame = 1
Query:  271 SRSSCRPMDRVMMTGAFWEGIVQGVGMKTTTSP-TAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSG 1056
            + S+ R  +   ++ A W G+ +    K    P T  +K PVLICPAQ  V  DY  M+  L+  G  AY AD+ R  W+  ++P+  + +Y+ G L P N L+F++E ID+ +E +K+ +PG+ ++++GHSIGGW+ R++L E C  A+RE   SLT LG+P   PPE   +W A DQTRGLL+++NA FPGA   G++YT+VAG   EG   G ++  +A+ SYLPLCGDG  RGDGI+P++ A+L+G+  + L   KH+G
Sbjct:   59 NHSNKRKEELYQLSMASW-GVFENFKPKQVEEPPTRVKKKPVLICPAQFCVAEDYADMIEILENMGHKAYVADIGRSDWLK-IVPATFTIDYWTGNLKPKNCLQFFFEGIDKTMERVKKENPGEQVNIIGHSIGGWIVRSYLGEVCTSAEREAFCSLTLLGSPQQTPPEGT-VWAAADQTRGLLRHVNANFPGAFHPGLRYTAVAGAGQEGSLAGGLQAAVAYSSYLPLCGDGNCRGDGIVPVETALLEGAEALVLEGVKHAG 318          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: W7TPL2_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL2_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.180e-69
Identity = 119/250 (47.60%), Postives = 164/250 (65.60%), Query Frame = 1
Query:  331 IVQGVGMKTTTSPTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENV----LSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSGEFFP 1068
            I + V +  +   T   K P++I PAQ  V  DY +M+  L  RG PAY  DL+RF W+  +  SA++ +Y++G L P+ TL FY++A    +E +K  +P + +H+V HSIGGWVARA+  E    AD E+V    +SLTTLG+PN  PP   G+W ++DQTRGLL+ +N RFPGA  +G++Y SV G   +G+F G +EE +A+ISYLPLCG G + GDGIIP  VA L+GST V +  +KHSG F P
Sbjct:   34 ITKAVALPASDQSTLN-KSPIVIFPAQFGVAKDYEEMIAELNSRGHPAYAVDLSRFDWLK-ITKSAITQDYWRGTLKPSGTLDFYFDAAAAIIERVKFEYPDRKIHLVAHSIGGWVARAYCGE---VADPEDVNKRFISLTTLGSPNYPPPAGEGIWGSIDQTRGLLEYVNLRFPGAFHKGMKYVSVGGVGTKGRFGGGLEESIAYISYLPLCGKGDAEGDGIIPESVAFLEGSTHVRVMEAKHSG-FIP 277          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A0G4HP68_9ALVE (GPI inositol-deacylase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HP68_9ALVE)

HSP 1 Score: 230 bits (587), Expect = 2.550e-68
Identity = 118/241 (48.96%), Postives = 157/241 (65.15%), Query Frame = 1
Query:  355 TTTSPTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKF--PGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTI-VELPSSKHSGEFFP 1068
            T T P A  K PV++CP+Q   P DYG ++  L  RGFPAY ADL R  W   L+P + + +Y+KG L P+  L+FYY AI R ++ + E+HP Q +H+VGHSIGGWVAR +LAE   +  ++ + SLTTLG+PN   PEDA L  A+DQTRGLL  +N+++PGA  EGV+Y S  G+ + G+   P   E  LAF+SY  LCG GG  GDGI+P  VA L+G    ++L   KH+G F P
Sbjct:   62 TRTDPKALVKNPVILCPSQFGAPPDYGDLLQELNARGFPAYVADLGRSDWFE-LIPHSFTADYWKGTLQPSKVLRFYYRAIQRTVDLVAEQHPNQQIHLVGHSIGGWVARLFLAEEADEDTQKRIRSLTTLGSPNKALPEDAPL--AIDQTRGLLSYVNSKYPGATCEGVRYFSAGGSRVRGQVEVPPDFESALAFLSYFALCGKGGEAGDGIVPYSVAELEGGERHLDLGDVKHTG-FLP 298          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A7S2UYV4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV4_9STRA)

HSP 1 Score: 224 bits (570), Expect = 7.140e-66
Identity = 112/244 (45.90%), Postives = 158/244 (64.75%), Query Frame = 1
Query:  337 QGVGMKTTTSPTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSGEFFP 1068
            Q  GM +      K   P+LI PAQ SVP DY  M   L+ RG  AY A+L+R  W+  ++P+ L+ +Y++G L P   L F++E +++AL +++E +PG  +H VGHSIGGW+ARA+L E C +A      SLTTLGTP+ GPP D+ +  + +QTRGLL  +N  FPGA+   ++YT V G+A +G    +VEE+LA+ SYLPLCG G + GDGI+PL  A L  +  + +P +KHSG F P
Sbjct:   55 QEAGMSSAVKLAKK---PILIFPAQFSVPNDYLPMCQDLERRGHRAYVAELSRADWLR-IVPATLTADYWRGTLKPKECLGFFFEGVEKALRKVQEENPGSQIHAVGHSIGGWIARAYLGEVCDEATCNQFCSLTTLGTPHQGPPADSPM-ASFEQTRGLLSYVNTNFPGAYHGHMKYTCVCGSAQQGAIGANVEEVLAYASYLPLCGKGEAHGDGIVPLQAAFLDDAERIIIPEAKHSG-FLP 292          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A0G4FAT1_VITBC (AB hydrolase-1 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FAT1_VITBC)

HSP 1 Score: 218 bits (556), Expect = 2.990e-64
Identity = 114/246 (46.34%), Postives = 159/246 (64.63%), Query Frame = 1
Query:  346 GMKTTTSPTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVL-SLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGA-HVEGVQYTSVAGTALEGKF-PGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELPSSKHSGEFFPHL 1074
            G     +   + K PVLICPAQL +  DY  M++ L  RG+PAY  DL R  W+  L+PS+L+  Y++G+L P+  L+FYY A+ R++  ++E HP Q MH+VGHSIGGW+ RA+LAE   D +R ++  SLTTLGTP+  PP D+  +   DQTRGLL  I   +PGA H + + Y SV G +++G    G +E +LA+ SYL LCG+G + GDG++P   A+L GS+ + L   KHSG F P L
Sbjct:   12 GPSAFATAAEEPKSPVLICPAQLGISEDYLDMISELNARGYPAYAVDLKRLDWLE-LIPSSLTLAYWQGKLEPSKVLQFYYRALRRSVTSVREAHPEQRMHLVGHSIGGWIVRAFLAEEYDDDERASLFTSLTTLGTPHNPPPADSP-FAQFDQTRGLLTYIADNYPGAFHSDHINYNSVVGASVKGGLGEGGLEGLLAYASYLALCGEGDTTGDGVVPQSTALLPGSSTMVLEDVKHSG-FVPSL 254          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A7S4PV97_9DINO (GPI inositol-deacylase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PV97_9DINO)

HSP 1 Score: 196 bits (498), Expect = 7.870e-53
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1
Query:  382 KCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIK----ERHPGQGMHVVGHSIGGWVARAWLAEGCAD-ADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGA-HV-EGVQYTSVAGTALEGKFP------------GSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTI 1026
            K P+++CPAQ   PGDY      L+ RG P + A L +  W   L+PS LS EY+ GEL P   L+FYY A++ A+ + +    +R  G  +H+V HSIGGW+ARA++ E  A   +  +V SL TLGTP+  PP+ + + TA DQTRGLLK IN+ FPGA H  EGV+Y SV G A++G  P            G +E  LA+ SYL LCGDGG+RGDGI PL  A+L G  +
Sbjct:  282 KDPIVVCPAQFGTPGDYTSFAAELRSRGHPVFLAPLDKLNWFE-LVPSFLSKEYWTGELRPGKVLQFYYRALEAAVADARSYLAKRGTGGQIHIVAHSIGGWIARAFMGEVLAPRGELVDVASLVTLGTPHAEPPKGSWMETA-DQTRGLLKYINSEFPGAFHAGEGVRYISVGGGAVQGGLPLPFGLGGEGAEGGPIERALAWASYLALCGDGGARGDGITPLACALLPGDGV 513          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A7S2GTW5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GTW5_9EUKA)

HSP 1 Score: 189 bits (479), Expect = 1.760e-51
Identity = 99/216 (45.83%), Postives = 135/216 (62.50%), Query Frame = 1
Query:  388 PVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGS-----VEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGS 1020
            PVLICPAQ    GDY ++   L+  G P   A LT F W   L+P+ L+ EY++G+L+P   L FYYEAI +  EE+ + +PG+ + +V HSIGGW+ R++L +  +D DR    +L TLGTP+  PPE  G +  +DQTRGLL+ +  R+PGA+   ++Y SV   A+ G  P S     +E  LA  SYLPLCGD   RGDGI PL  A L+G+
Sbjct:  156 PVLICPAQFGTAGDYDELAEELRALGHPVMVAPLTPFEWFR-LIPATLTAEYWRGDLSPDVALPFYYEAIAKGAEELTKAYPGRKISLVAHSIGGWITRSYLGQ-LSDDDRSKFGALVTLGTPHAPPPE--GFFRTLDQTRGLLRFVEERYPGAYHPELRYMSVGSDAVAGSLPWSSNGRLLESTLALASYLPLCGDAFIRGDGITPLACAHLEGA 367          
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Match: A0A0M0K3U1_9EUKA (Alpha beta-hydrolase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3U1_9EUKA)

HSP 1 Score: 184 bits (466), Expect = 1.510e-48
Identity = 97/219 (44.29%), Postives = 135/219 (61.64%), Query Frame = 1
Query:  367 PTAKEKCPVLICPAQLSVPGDYGQMVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYYEAIDRALEEIKER-HPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSLTTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGTALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGS 1020
            P +  + PVLICPAQ     DY ++V  L+ RG P     L    W+  L+P+AL+PEY+K EL P   L FY+EA+DRA++E+      G+ +H+V HSIGGW+ RA+L    A+  R    SL TLGTP+T PPE  G    +DQTRGLL+ +  R+PGA+ + ++Y +V   A+ G     +  +LA  SYLPLCGD  + GDGI P+  A L+G+
Sbjct:  268 PESLSRDPVLICPAQFGTAKDYSELVDALRARGHPVSVTPLAFTDWLR-LVPAALTPEYWKCELAPETALPFYFEALDRAVDELASGPFAGRPIHLVAHSIGGWIVRAYLGALSAEK-RAAFASLVTLGTPHTPPPE--GFLRTIDQTRGLLRYVEERYPGAYHKELRYLTVGSRAVRGALKPELGALLATASYLPLCGDAFAEGDGITPIGCAHLEGA 482          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1249.2069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4T2_9PHAE4.710e-19988.64AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A835ZI81_9STRA1.260e-7456.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YIH2_HETAK3.830e-7043.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TPL2_9STRA1.180e-6947.60AB hydrolase-1 domain-containing protein n=1 Tax=N... [more]
A0A0G4HP68_9ALVE2.550e-6848.96GPI inositol-deacylase n=1 Tax=Chromera velia CCMP... [more]
A0A7S2UYV4_9STRA7.140e-6645.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4FAT1_VITBC2.990e-6446.34AB hydrolase-1 domain-containing protein n=1 Tax=V... [more]
A0A7S4PV97_9DINO7.870e-5346.58GPI inositol-deacylase n=1 Tax=Alexandrium monilat... [more]
A0A7S2GTW5_9EUKA1.760e-5145.83Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0M0K3U1_9EUKA1.510e-4844.29Alpha beta-hydrolase n=1 Tax=Chrysochromulina tobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1249contigEcto-sp13_S_contig1249:13336..16545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score505.4
Seed ortholog evalue2.3e-140
Seed eggNOG ortholog2880.D8LRD2
Model size1427
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGs2S15P@2759,COG1075@1
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-06_002970.1
Cds size1101
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1249.2069.1prot_Ecto-sp13_S_contig1249.2069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1249 13524..16407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.9370759-UTR-Ecto-sp13_S_contig1249:13335..135231681462665.9370759-UTR-Ecto-sp13_S_contig1249:13335..13523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1249 13336..13523 -
1681462666.003167-UTR-Ecto-sp13_S_contig1249:16407..165451681462666.003167-UTR-Ecto-sp13_S_contig1249:16407..16545Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1249 16408..16545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.9505355-CDS-Ecto-sp13_S_contig1249:13523..138641681462665.9505355-CDS-Ecto-sp13_S_contig1249:13523..13864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1249 13524..13864 -
1681462665.9675624-CDS-Ecto-sp13_S_contig1249:14200..145191681462665.9675624-CDS-Ecto-sp13_S_contig1249:14200..14519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1249 14201..14519 -
1681462665.9777339-CDS-Ecto-sp13_S_contig1249:14967..150851681462665.9777339-CDS-Ecto-sp13_S_contig1249:14967..15085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1249 14968..15085 -
1681462665.9869516-CDS-Ecto-sp13_S_contig1249:16084..164071681462665.9869516-CDS-Ecto-sp13_S_contig1249:16084..16407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1249 16085..16407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1249.2069.1

>prot_Ecto-sp13_S_contig1249.2069.1 ID=prot_Ecto-sp13_S_contig1249.2069.1|Name=mRNA_Ecto-sp13_S_contig1249.2069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MTRLMYYLLPLALCRRTVVRGFGLLPPLLSSQCRGDVARPHSQTSRSSCR
PMDRVMMTGAFWEGIVQGVGMKTTTSPTAKEKCPVLICPAQLSVPGDYGQ
MVTGLKERGFPAYCADLTRFGWITGLLPSALSPEYFKGELTPANTLKFYY
EAIDRALEEIKERHPGQGMHVVGHSIGGWVARAWLAEGCADADRENVLSL
TTLGTPNTGPPEDAGLWTAVDQTRGLLKNINARFPGAHVEGVQYTSVAGT
ALEGKFPGSVEEMLAFISYLPLCGDGGSRGDGIIPLDVAVLKGSTIVELP
SSKHSGEFFPHLSRDRHVGNARKGRGGRRVAQKRFSRFPVMGLSWSWVSL
TAQPELVLERSGLFLQ*
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mRNA from alignment at Ecto-sp13_S_contig1249:13336..16545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1249.2069.1 ID=mRNA_Ecto-sp13_S_contig1249.2069.1|Name=mRNA_Ecto-sp13_S_contig1249.2069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1249:13336..16545- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCACCGACACCCGGGGACTCCGTGTGATCACCCTCCTCCCCGCACTC ACCCTGCACAAATACGCCGCATGTCGCCTGCGTGTCGCGCGTCGCGCTAG GCGTGCGTCGTACTCGTATCCTCTGCAAGCGCCAAATCATGACGAGGCTC ATGTACTACCTCCTTCCCTTGGCCCTGTGCCGACGTACAGTCGTTCGGGG GTTTGGCCTCTTGCCGCCGCTTCTCTCGTCGCAATGTAGAGGCGACGTTG CTCGGCCCCATTCGCAAACATCACGAAGTTCCTGCCGTCCGATGGATCGT GTCATGATGACGGGCGCGTTTTGGGAAGGGATCGTGCAGGGCGTTGGCAT GAAGACGACGACATCTCCGACGGCGAAGGAGAAGTGCCCCGTGCTCATAT GCCCAGCGCAGCTGAGCGTTCCGGGTGACTACGGACAGATGGTCACAGGG CTGAAGGAAAGGTACGGATACACACCGTCACGAGGCACACCTACATGCTG CGCGTTGTTGTCTTCGCTCTATTGTACACCCATATCCACGATATGTCCTG CTGTCTCTGCTGTTCTTGTGTGTCTGAAACTGCTTTTGTACTCCGAACTA TTTAGGATGTCCCCGCGCCAGTTGCGCGGTACTTGGCAACATCGGCAACA TGACAACATCACTTCGATTTTCTCCATTTTGCGCAGTTATCCCGCTTCAT GACCTTCACGACTCAACTACACTGCAAACTACAGTACTAGGACTCATCTC TGCGTTCTGACTTACATCAACCCGCCACAGAGTGCAACACCGAGGAAGGA GACTTGCGCTTGTTTTTGCCTGTGTAACAGGATACCGCGATTGCACCAGA GATGAACATGATCGTTACGTTCTGATTTGGGATCCGATTCCGATTATTTT TGACATGCTGTGCCGTGTAGTCGTGGCAACAACGATCCGTGTGTTACCGT TCCGCAGCTGAAGCGAGAAATTCTCACAGCGCCACTTGGAGAAATATTTA GCAACCTTTTGATTTGGAAGCCTCTCTGTCGACTCTGCCGCCGGTTGGAG CGCAGCTCGCTCTCACCAATGTACCCGTGATCGTGATCGATGTAGACTAC AACTGCTACGCGGGTTGTCACCCGCGAGTGCGCAGAAGCGTGTTCCGCGC GCGGGTCGAATTTCTGGCGCTGTGCACCAGGCTTGGCACATAAATATTTG GCTCCAGGACCTCACACTTCAAAATAATGGCCAACCAGAGCACCTTGAAA CCAGCGGTCTCGGACCCTGGCCATTAGCATTTGGCCTGCAAACCACAAGC CCATGTTGGCATTTTTGTGCCGAAGACGAGAGTGCTGGAAACCCGCAAAA TCAGGCGTTTTCGCAGATACTTGAAAGGAATCTTGTACCGTAAAGAAGCC GTGTGCCCTGTACCCATTGTCCTCTTTTCGTCGGTCGACGTATCGCGATA TATTGATCAGGGGCTTCCCCGCGTATTGCGCAGACCTGACGAGATTTGGG TGGATCACGGGGTTGCTTCCCTCGGCACTGTCGCCGGAGTACTTCAAGGG CGAGCTCACCCCGGCCAATACCCTGAAGGTGGGCCTTTGATGGATCACCA CTCCGTGTGAACGTGGATCAGGCTGCGGTGGGATGACTTCTTGTTGCCCG TCCCGCGGCTACAGCGAGATTCCCAGAGGGTCGTGCAGCAACGTATTTCA CACTCACAAGGAGTCAACACCTAACCGCCCGACAGGCCTCACACATGTGT ATCCTCACAACCTCGGGCATGAAAGGAGGACCAGGAACAGAATAAATCAT GGATCGGCACACTTCTTTGGAACCTTTTTTTCTCGCCTCACAATTTCTTC GCGGGACGACACAAAGTGACCCTTTCCCCGCCTCGCCCAAAAGAACCTCG TCGTCGCCCACGAGCATGTACCGGTTGGGCGAAGTGCTTGGGGTGCATTG CAGTGGTGTGAAGGTTCATGGCGTGTAGACTAACGGTCGTGCATGAATTT TTGTACTCCGCACGATTTCTGTGAAGTTTTACTACGAGGCAATAGATCGG GCGCTGGAAGAAATAAAAGAGAGACATCCCGGACAGGGGATGCATGTCGT TGGGCATAGCATTGGGGGCTGGGTTGCCCGCGCTTGGCTCGCGGAGGGAT GTGCGGACGCAGACCGGGAGAATGTGCTCAGCCTCACGACCCTAGGAACT CCAAACACGGGCCCCCCGGAAGATGCCGGACTATGGACCGCCGTGGACCA AACGCGGGGGCTCCTGAAGAACATCAACGCTAGATTTCCAGGGGCGCATG TGGAAGGCGTTCAGTACACGAGCGTCGCGGGGACTGCGCTGGAAGGTATA CGAAACGCATACCATGATGTTGATGGATCAGGGTATGTCGTCCCTTGTTG GGTCCGCTTTTGACACACGTGGACCGGCGTGGGCTTGCAGTTCCAGTGCA GCACGGTTGGATGCTGGAGAGTGACTCGGTTTTTCGATAGGTTTGGGCGT GTGCACCAATCAGCTTGTTTTGTGTGTTTGCTTTTCGAGGTGCATGAGAC GTTCGTTTTGTCTCCAACGCTTGCCGGTTTTGCTGCTCGAAGACAATGCA CGCTTCTTCTCGTGGTAAGTATCTCTTCCAAAAGTTTAAGGCCCGTTATT AATTTCTCTATCGTCCGAACCTTGCGTCCAGGAAAATTCCCAGGGAGCGT GGAGGAAATGCTTGCGTTCATCAGCTACCTACCTCTCTGCGGGGACGGCG GGTCTCGCGGTGACGGCATCATTCCGCTTGACGTGGCTGTATTGAAGGGC TCCACCATTGTCGAATTACCATCGTCCAAACATTCAGGTGAGTTTTTCCC TCACTTATCCCGCGACCGACATGTTGGGAACGCGCGAAAAGGGCGGGGCG GGCGGCGGGTCGCACAAAAACGTTTCTCGCGCTTTCCTGTAATGGGGCTT TCTTGGTCCTGGGTCTCGTTGACAGCGCAGCCAGAGCTTGTCCTCGAACG GTCCGGACTATTCCTACAGTAGCACAACGATGTTTATTTTGCTACAACAA TGTGCGAGGATCTCGATTCAACACCGAACGTGCGGGGCACCGGTAACACG CTGTTGATACCTGGATGTGTGATTTTGCCCACTGCACTGAGAACAAGTAG CTAGAAGAACAGCTCGAACACATTTCTTTTTCAACAATTGTTTGTTTACG ATCGATCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1249:13336..16545-

>mRNA_Ecto-sp13_S_contig1249.2069.1 ID=mRNA_Ecto-sp13_S_contig1249.2069.1|Name=mRNA_Ecto-sp13_S_contig1249.2069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1249:13336..16545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGCTCATGTACTACCTCCTTCCCTTGGCCCTGTGCCGACGTAC
AGTCGTTCGGGGGTTTGGCCTCTTGCCGCCGCTTCTCTCGTCGCAATGTA
GAGGCGACGTTGCTCGGCCCCATTCGCAAACATCACGAAGTTCCTGCCGT
CCGATGGATCGTGTCATGATGACGGGCGCGTTTTGGGAAGGGATCGTGCA
GGGCGTTGGCATGAAGACGACGACATCTCCGACGGCGAAGGAGAAGTGCC
CCGTGCTCATATGCCCAGCGCAGCTGAGCGTTCCGGGTGACTACGGACAG
ATGGTCACAGGGCTGAAGGAAAGGGGCTTCCCCGCGTATTGCGCAGACCT
GACGAGATTTGGGTGGATCACGGGGTTGCTTCCCTCGGCACTGTCGCCGG
AGTACTTCAAGGGCGAGCTCACCCCGGCCAATACCCTGAAGTTTTACTAC
GAGGCAATAGATCGGGCGCTGGAAGAAATAAAAGAGAGACATCCCGGACA
GGGGATGCATGTCGTTGGGCATAGCATTGGGGGCTGGGTTGCCCGCGCTT
GGCTCGCGGAGGGATGTGCGGACGCAGACCGGGAGAATGTGCTCAGCCTC
ACGACCCTAGGAACTCCAAACACGGGCCCCCCGGAAGATGCCGGACTATG
GACCGCCGTGGACCAAACGCGGGGGCTCCTGAAGAACATCAACGCTAGAT
TTCCAGGGGCGCATGTGGAAGGCGTTCAGTACACGAGCGTCGCGGGGACT
GCGCTGGAAGGAAAATTCCCAGGGAGCGTGGAGGAAATGCTTGCGTTCAT
CAGCTACCTACCTCTCTGCGGGGACGGCGGGTCTCGCGGTGACGGCATCA
TTCCGCTTGACGTGGCTGTATTGAAGGGCTCCACCATTGTCGAATTACCA
TCGTCCAAACATTCAGGTGAGTTTTTCCCTCACTTATCCCGCGACCGACA
TGTTGGGAACGCGCGAAAAGGGCGGGGCGGGCGGCGGGTCGCACAAAAAC
GTTTCTCGCGCTTTCCTGTAATGGGGCTTTCTTGGTCCTGGGTCTCGTTG
ACAGCGCAGCCAGAGCTTGTCCTCGAACGGTCCGGACTATTCCTACAGTA
G
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