mRNA_Ecto-sp13_S_contig12483.2062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: D7G6T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T5_ECTSI) HSP 1 Score: 336 bits (862), Expect = 1.380e-113 Identity = 188/262 (71.76%), Postives = 200/262 (76.34%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMFLVDRRVRSSPHLPPDAAGDVDIMEPTSSARERLLPDQDT-------RERGLDGEVRGRKLSGAADAASVTSRRGRHQQSEETVSKIESVLSRERGQGQPSLHAM--NAAEDT 759
NSVMK+ +IILTALTIGM KYRPSLKASYDASL YS ++ F W FS+VLEPLA+VPQLLVFRGSTDAGRL WTYVTLMGAYRA YILNWVYRS+ EYGY HHPLVYAAGI+QTGMYLMFLVDR VR SPHLPPD GDVDIMEPTSSARERLLPDQDT RERGLDGEV GRKLSG ADAAS TSRRG HQ+ +ETVSKIESVLSRERGQG+ S+HA NAAEDT
Sbjct: 25 NSVMKVVFIILTALTIGMFKYRPSLKASYDASLP-----------------------------YSQTSLVNFLWTFSEVLEPLALVPQLLVFRGSTDAGRLAWTYVTLMGAYRAFYILNWVYRSHYEYGYIHHPLVYAAGIIQTGMYLMFLVDRGVRVSPHLPPDETGDVDIMEPTSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGVADAASATSRRGEHQRGDETVSKIESVLSRERGQGR-SVHASGKNAAEDT 256
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: D7FRR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR1_ECTSI) HSP 1 Score: 220 bits (560), Expect = 5.970e-69 Identity = 117/157 (74.52%), Postives = 121/157 (77.07%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMFLVDRRVR 471
NSVMKIA+I LT LTIGMLK RPSLKASYDASL Y LPGV+RFAWNFS+VLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVY SYN+Y YRHHPLVYAAGIVQTGMYLMFLVDRRVR
Sbjct: 61 NSVMKIAHIFLTGLTIGMLKSRPSLKASYDASL-----------------------------HYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVR 188
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI) HSP 1 Score: 134 bits (337), Expect = 4.460e-35 Identity = 70/152 (46.05%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLP--GVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NS+MK+ YI LT+L I M++ +KA+YD S D F W + P L +++ W S+P +I F W FS+VLEP A+VPQL+V + + L YV L+GAYR+LYI+NWVYR++ E GY+HH LVY AG+VQT +Y F
Sbjct: 60 NSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWS---WWTVSMPFSSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADF 208
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.370e-31 Identity = 66/150 (44.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NSVMK+ YI LTAL I M++ + ++ +YDAS D F + + P LA + + + V WNFS LE +A+VPQL+V + + L Y+ +GAYRALYILNW+YRS++E GY+HH +VY AGIVQT +Y+ F
Sbjct: 60 NSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQGF--------DVRDLFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDF 201
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: B7G303_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G303_PHATC) HSP 1 Score: 121 bits (304), Expect = 3.650e-30 Identity = 61/151 (40.40%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLG-KRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NSVMK+ YI+ TA + ++++ +K++Y+ S D F W + P F +A+I +L+G KR+ + + W FS LE +A++PQL+V + + L Y+ MGAYRALYI+NW+YR++ E GY+HH +VY G+VQT +Y F
Sbjct: 62 NSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALIT----HLIGSKRFDM---VELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEKGYKHHWVVYFCGVVQTLLYADF 205
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: B8C2C4_THAPS (ER lumen protein-retaining receptor n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2C4_THAPS) HSP 1 Score: 120 bits (301), Expect = 1.010e-29 Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NSVMK+ YI TA + ++ + + ++YD + D FR W + P VLA + + G +S+ V W FS LE +A++PQL+V + D L Y+ MG YRALYI+NWV+R+YNE GYRHH +VY G++QT +Y F
Sbjct: 60 NSVMKVLYIASTASIVYTIRLQEPICSTYDKAQDTFRHWEFAVAPCAVLATLTHLISG--GGLFSVVDVQELLWTFSIYLEAVAILPQLIVLQRYRDVENLTGNYIFFMGLYRALYIVNWVFRAYNEPGYRHHYVVYFCGVLQTLLYADF 207
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: A0A1Z5KJM8_FISSO (ER lumen protein retaining receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJM8_FISSO) HSP 1 Score: 117 bits (294), Expect = 1.130e-28 Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NS+MKI YI+ TA I +K++ +K++YD S D F W + P VLA + +L+G S I W FS LE +A++PQL+V + + L Y+ MGAYR LYILNW+YR+ E Y+HH +VY G++QT +Y+ F
Sbjct: 62 NSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVT----HLIGSGISGFSFIELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDF 207
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: A0A7S2PF00_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PF00_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.280e-28 Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NSVMK+ YI TA I ++Y+ + ++YD + D F W + P FV+A + + G +S ++ W FS LE +A++PQL+ + + L Y+ MGAYRALYI+NW+YRSYNE Y+HH +VY G++QT +Y F
Sbjct: 62 NSVMKVLYIGSTASIIYTIRYQEPICSTYDKAQDTFLHWKFAVAPCFVVAALTYFF----GNGFSDFDLLELLWTFSIYLEAIAILPQLITLQRYREVENLTGNYIFFMGAYRALYIVNWIYRSYNEPFYKHHYVVYFCGVLQTLLYADF 207
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: A0A7S1UWG6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWG6_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.680e-28 Identity = 63/172 (36.63%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSLPGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMFLVD--RRVRSSPHLPPDAAGDV 510
NS+MKI YI TA I +K++ +K++YD + D F W + P ++A + +++G + ++ W FS LE +A++PQL+V + + L +V MGAYR LYILNW+YR++ E+GY+HH +VY G++QT +Y F + VRS +GDV
Sbjct: 82 NSIMKILYIGSTASIIYTIKFQEPIKSTYDKAQDTFLHWKFAVAPCAIVAFLT----HMIGSGIAKFELMELLWTFSIYLESIAILPQLIVLQRYREVENLTGNFVFFMGAYRFLYILNWIYRAHTEHGYKHHWVVYFCGVLQTLLYADFFYYYVKSVRSGGRFKLPTSGDV 249
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Match: K0R4W5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4W5_THAOC) HSP 1 Score: 115 bits (289), Expect = 6.630e-28 Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1
Query: 1 NSVMKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQIWENLLGKRYSL-PGVIRFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYRSYNEYGYRHHPLVYAAGIVQTGMYLMF 450
NS MKIAYI+ TA + M++ + +YD + D FR W + P VLA + G YSL + W FS LE +A++PQL++ + + L Y+ MG+YRALYILNW+YR+Y E GYRHH + Y G++QT +Y F
Sbjct: 62 NSCMKIAYILSTASIVYMIRLSDPICTTYDKAQDTFRHWAFAVGPCAVLATLTHFISGE-GSGYSLFVNIQELLWTFSIYLESIAILPQLILLQRYREVENLTGNYIFFMGSYRALYILNWIYRTYYEPGYRHHYVAYFCGVLQTLLYADF 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12483.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12483.2062.1 >prot_Ecto-sp13_S_contig12483.2062.1 ID=prot_Ecto-sp13_S_contig12483.2062.1|Name=mRNA_Ecto-sp13_S_contig12483.2062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp MKIAYIILTALTIGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVback to top mRNA from alignment at Ecto-sp13_S_contig12483:115..2637+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12483.2062.1 ID=mRNA_Ecto-sp13_S_contig12483.2062.1|Name=mRNA_Ecto-sp13_S_contig12483.2062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2523bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12483:115..2637+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12483:115..2637+ >mRNA_Ecto-sp13_S_contig12483.2062.1 ID=mRNA_Ecto-sp13_S_contig12483.2062.1|Name=mRNA_Ecto-sp13_S_contig12483.2062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12483:115..2637+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |