prot_Ecto-sp13_S_contig1248.2060.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1248.2060.1
Unique Nameprot_Ecto-sp13_S_contig1248.2060.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length356
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Match: A0A6H5KCA7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA7_9PHAE)

HSP 1 Score: 541 bits (1395), Expect = 8.530e-188
Identity = 310/356 (87.08%), Postives = 317/356 (89.04%), Query Frame = 0 
Query:    1 MASADRTMMMQWPELCVIVVVALSLSPAAGFQTSNLFLSRPQQPTHSSXXXXXXXXXHSRRPAPRLLLSWPPSAVLLRPRRSHIHSLSADSAVGSPTRAAGFSSVQSLEGGVGQRLRLAGSNTALELAASRGTNGVGEEGGSGGADSDKGDGWRQRMVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSXXXXXXXXXXXXXXXXXAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAITEVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTGKLASST 356
            M SA RTMM QWPELCVIVV+ LSLS AAGF TSN FLSRPQQPTHSSXXXXXXXX H RRPAPRLLLS PPSA+LLRPRRS IHSLSADSA GSPTRAAGFSS+QSLEG VGQR RLAGSNTAL LAASRG+NGVGEEGGSGGADSDKG GWRQRMV+TIV VVLRIRAVAAGLGAMLGLGR TK SS                 AGK RGRRATAFS LFRKRTATLLLVMLFVLAMGFRSAGTPA+TEVPMSTFMQLMEGKRGADVVESVRVSKTG MFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFI+KRGQGSMVGSTGKLASST
Sbjct:    1 MVSALRTMM-QWPELCVIVVLTLSLSSAAGFLTSNPFLSRPQQPTHSSXXXXXXXX-HCRRPAPRLLLSRPPSAILLRPRRSRIHSLSADSAAGSPTRAAGFSSLQSLEGSVGQRRRLAGSNTALALAASRGSNGVGEEGGSGGADSDKGGGWRQRMVQTIVFVVLRIRAVAAGLGAMLGLGRPTKSSSSNQSLFSSASGKKKAA-AGKSRGRRATAFSRLFRKRTATLLLVMLFVLAMGFRSAGTPAVTEVPMSTFMQLMEGKRGADVVESVRVSKTGTMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIVKRGQGSMVGSTGKLASST 353
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BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Match: D7G2Q1_ECTSI (Cell division protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q1_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 6.330e-107
Identity = 191/200 (95.50%), Postives = 194/200 (97.00%), Query Frame = 0 
Query:  157 MVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSXXXXXXXXXXXXXXXXXAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAITEVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTGKLASST 356
            MVRTIV VVLRIRAVAAGLGAMLGLGRWTKKS XXXXXXXXXXXXXXXXX GK RGRRATAFS LFRKRTATLL+VMLFVLAMGFRSAGTPA+TEVPMSTFMQLMEGKRGADVVESVRVSKTG MFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFI+KRGQGSMVGSTGKLASST
Sbjct:    1 MVRTIVFVVLRIRAVAAGLGAMLGLGRWTKKSXXXXXXXXXXXXXXXXXXXGKSRGRRATAFSRLFRKRTATLLVVMLFVLAMGFRSAGTPAVTEVPMSTFMQLMEGKRGADVVESVRVSKTGTMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIVKRGQGSMVGSTGKLASST 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA7_9PHAE8.530e-18887.08AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2Q1_ECTSI6.330e-10795.50Cell division protein n=1 Tax=Ectocarpus siliculos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 183..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 246..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 227..245
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 320..338
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 339..356
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..182
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..30
score: 0.504
NoneNo IPR availableTMHMMTMhelixcoord: 321..338
NoneNo IPR availableTMHMMTMhelixcoord: 227..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1248contigEcto-sp13_S_contig1248:14471..18260 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1248.2060.1mRNA_Ecto-sp13_S_contig1248.2060.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1248 14442..18260 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1248.2060.1 ID=prot_Ecto-sp13_S_contig1248.2060.1|Name=mRNA_Ecto-sp13_S_contig1248.2060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MASADRTMMMQWPELCVIVVVALSLSPAAGFQTSNLFLSRPQQPTHSSAA
AAAAAAAHSRRPAPRLLLSWPPSAVLLRPRRSHIHSLSADSAVGSPTRAA
GFSSVQSLEGGVGQRLRLAGSNTALELAASRGTNGVGEEGGSGGADSDKG
DGWRQRMVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSSSNQSLFSSAS
GKKKAAAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAIT
EVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKE
VFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTG
KLASST
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