mRNA_Ecto-sp13_S_contig1248.2060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1248.2060.1
Unique NamemRNA_Ecto-sp13_S_contig1248.2060.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Match: A0A6H5KCA7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA7_9PHAE)

HSP 1 Score: 542 bits (1397), Expect = 6.040e-188
Identity = 310/356 (87.08%), Postives = 317/356 (89.04%), Query Frame = 3 
Query:   30 MASADRTMMMQWPELCVIVVVALSLSPAAGFQTSNLFLSRPQQPTHSSXXXXXXXXXHSRRPAPRLLLSWPPSAVLLRPRRSHIHSLSADSAVGSPTRAAGFSSVQSLEGGVGQRLRLAGSNTALELAASRGTNGVGEEGGSGGADSDKGDGWRQRMVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSXXXXXXXXXXXXXXXXXAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAITEVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTGKLASST 1097
            M SA RTM MQWPELCVIVV+ LSLS AAGF TSN FLSRPQQPTHSSXXXXXXXX H RRPAPRLLLS PPSA+LLRPRRS IHSLSADSA GSPTRAAGFSS+QSLEG VGQR RLAGSNTAL LAASRG+NGVGEEGGSGGADSDKG GWRQRMV+TIV VVLRIRAVAAGLGAMLGLGR TK SS                 AGK RGRRATAFS LFRKRTATLLLVMLFVLAMGFRSAGTPA+TEVPMSTFMQLMEGKRGADVVESVRVSKTG MFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFI+KRGQGSMVGSTGKLASST
Sbjct:    1 MVSALRTM-MQWPELCVIVVLTLSLSSAAGFLTSNPFLSRPQQPTHSSXXXXXXXX-HCRRPAPRLLLSRPPSAILLRPRRSRIHSLSADSAAGSPTRAAGFSSLQSLEGSVGQRRRLAGSNTALALAASRGSNGVGEEGGSGGADSDKGGGWRQRMVQTIVFVVLRIRAVAAGLGAMLGLGRPTKSSSSNQSLFSSASGKKKAA-AGKSRGRRATAFSRLFRKRTATLLLVMLFVLAMGFRSAGTPAVTEVPMSTFMQLMEGKRGADVVESVRVSKTGTMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIVKRGQGSMVGSTGKLASST 353
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BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Match: D7G2Q1_ECTSI (Cell division protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q1_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 8.720e-107
Identity = 191/200 (95.50%), Postives = 194/200 (97.00%), Query Frame = 3 
Query:  498 MVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSXXXXXXXXXXXXXXXXXAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAITEVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTGKLASST 1097
            MVRTIV VVLRIRAVAAGLGAMLGLGRWTKKS XXXXXXXXXXXXXXXXX GK RGRRATAFS LFRKRTATLL+VMLFVLAMGFRSAGTPA+TEVPMSTFMQLMEGKRGADVVESVRVSKTG MFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFI+KRGQGSMVGSTGKLASST
Sbjct:    1 MVRTIVFVVLRIRAVAAGLGAMLGLGRWTKKSXXXXXXXXXXXXXXXXXXXGKSRGRRATAFSRLFRKRTATLLVVMLFVLAMGFRSAGTPAVTEVPMSTFMQLMEGKRGADVVESVRVSKTGTMFFKMNGKECYTLPLRVSKEVFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIVKRGQGSMVGSTGKLASST 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1248.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA7_9PHAE6.040e-18887.08AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2Q1_ECTSI8.720e-10795.50Cell division protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1248contigEcto-sp13_S_contig1248:14442..18260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score331.3
Seed ortholog evalue5.7e-88
Seed eggNOG ortholog2880.D7G2Q1
Model size1097
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031967,GO:0031975,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-11_003070.1
Cds size1068
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1248.2060.1prot_Ecto-sp13_S_contig1248.2060.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1248 14471..18260 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.1929584-UTR-Ecto-sp13_S_contig1248:14441..144701681462665.1929584-UTR-Ecto-sp13_S_contig1248:14441..14470Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1248 14442..14470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.2146058-CDS-Ecto-sp13_S_contig1248:14470..150281681462665.2146058-CDS-Ecto-sp13_S_contig1248:14470..15028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 14471..15028 +
1681462665.2307775-CDS-Ecto-sp13_S_contig1248:15938..161331681462665.2307775-CDS-Ecto-sp13_S_contig1248:15938..16133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 15939..16133 +
1681462665.255974-CDS-Ecto-sp13_S_contig1248:16884..169981681462665.255974-CDS-Ecto-sp13_S_contig1248:16884..16998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 16885..16998 +
1681462665.2706478-CDS-Ecto-sp13_S_contig1248:17440..175951681462665.2706478-CDS-Ecto-sp13_S_contig1248:17440..17595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 17441..17595 +
1681462665.279592-CDS-Ecto-sp13_S_contig1248:18214..182601681462665.279592-CDS-Ecto-sp13_S_contig1248:18214..18260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 18215..18260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1248.2060.1

>prot_Ecto-sp13_S_contig1248.2060.1 ID=prot_Ecto-sp13_S_contig1248.2060.1|Name=mRNA_Ecto-sp13_S_contig1248.2060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=356bp
MASADRTMMMQWPELCVIVVVALSLSPAAGFQTSNLFLSRPQQPTHSSAA
AAAAAAAHSRRPAPRLLLSWPPSAVLLRPRRSHIHSLSADSAVGSPTRAA
GFSSVQSLEGGVGQRLRLAGSNTALELAASRGTNGVGEEGGSGGADSDKG
DGWRQRMVRTIVSVVLRIRAVAAGLGAMLGLGRWTKKSSSSNQSLFSSAS
GKKKAAAGKPRGRRATAFSLLFRKRTATLLLVMLFVLAMGFRSAGTPAIT
EVPMSTFMQLMEGKRGADVVESVRVSKTGAMFFKMNGKECYTLPLRVSKE
VFKALCNSGIPFRASKSPPGLSFIFPVVYLLAVYYFIIKRGQGSMVGSTG
KLASST
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mRNA from alignment at Ecto-sp13_S_contig1248:14442..18260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1248.2060.1 ID=mRNA_Ecto-sp13_S_contig1248.2060.1|Name=mRNA_Ecto-sp13_S_contig1248.2060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:14442..18260+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGAGCACTCACTGCTGTGTTTCACACTACATGGCCAGCGCAGACAGAACC
ATGATGATGCAGTGGCCAGAGCTGTGCGTTATCGTCGTGGTGGCGCTCTC
GTTGAGCCCAGCTGCGGGGTTCCAAACGTCCAACCTGTTCCTCTCTCGGC
CCCAGCAGCCGACACATTCGTCGGCAGCGGCAGCTGCAGCAGCAGCAGCT
CACAGCCGTCGCCCAGCCCCTCGATTGCTGCTCTCTTGGCCACCAAGCGC
CGTACTACTTCGACCACGACGGTCTCACATCCACAGCCTATCTGCAGATT
CAGCAGTAGGATCACCAACGAGAGCAGCAGGGTTTTCATCAGTGCAATCA
CTGGAGGGCGGTGTTGGCCAGAGACTAAGGCTGGCGGGTTCAAACACCGC
GTTGGAGCTAGCAGCCAGCAGAGGCACCAACGGGGTGGGTGAAGAGGGGG
GAAGCGGGGGGGCGGACAGCGACAAGGGTGACGGGTGGCGGCAGCGCATG
GTCCGAACCATCGTGTCCGTGGTCCTGAGAATACGGGCAGTGGCGGCTGG
GCTGGGGGCCATGCTTGGTCTGGGTCGATGGACCAAGGTGGGGCTGGCTG
GGTGCGTCTTATACTTGGCACACACAGCAGAAAATGTGTCCTGTGTGTCT
GTCTGCGAGGAGAAGGAGTCAATTGGTGGCGCCAAGTCCCAGCAACGATT
CGTGCCTACATAGTCTTGTCAGATGAAGCGATCACTACTTCTGGCGCGAT
AGTTGATACGCCAGTTTGCATGTCACGAGTTGACGTTGGCTTGGACCGCG
ACTGGTTGCATGTTGAAGATACCACCCCCCGTGGATATATTTTCGAAGAT
GCCTGATTGCTCGGGAGCAACGCCAGCAGTGCCGAAAAGGCCACCTTGGA
ACAGTCTCGTCCAGGTCTTTCTAAAAGCATCGTTTGGTCGTGGCATCCTC
TTTGTCGCGGAGAAGTTGAGCCCTGAATACTGGGGATGGATGTGGAATCT
TTTGAGCATGTACCACCACCTACGTCGGTAGTGACTCTTTCGCCTGCTAT
CCCGTCATGATGTTGCTGGAAAATGTGTCCGGTGCAAAAGAGAGGTGACT
CGCTCGTGCCCGGCGCGGCTACTTCTGTTGCACGCGAGCTATGTAGGGTG
CTAACTTATTTAACATCGTTGTTTGGTATGTTTTAGGTTGGTGCTTTGAG
CAGCGAAAGGTTTTCGATGATCTCGTCAGTCGCCTCCCCTTCCTTGCCCG
TACAGGACGACCTAATCACGTCTCGTGGTACCTACTCATGTCTCGTGGTC
ATGTGTACATACATTTGGAAAAGCTGTCATGGTCTACGCGCCCACTGGCT
TGACACTAACGGCGTGGGACGCCGAGAAGAGACGGCAGCCCCATAAATTT
GTCTTTGAACGAACCCCTTTGATGAGAACCATTTCGCTCATCCCCTCACG
CTGTTGCTCCTGCCGTCTCACGCCCTGCCCCGCCGACCGCACGCTAGAAG
AGTTCTTCCTCGAACCAATCGCTGTTCAGCTCCGCCAGCGGTAAGAAGAA
GGCGGCGGCTGGGAAGCCGCGGGGTCGACGCGCGACAGCGTTCTCGCTAC
TGTTCAGGAAGAGGACCGCCACGCTGCTTCTGGTGATGCTCTTCGTGCTG
GCCATGGGATTTCGTTCGGCGGGCACGCCCGCCATTACCGAGGTGGGTAC
TACTGCTGTGTTTCGTTCACCTTTACAAGGGCACGTGCCCGACCTGGGGT
GTGTGCACGGGGTGCTTGCGTTGTTTGTCGGAATTTGAGTGGGTTCTTGG
TCACATCCTACCAGTTCAGGCAGCGCTGAAAAGAGTCGCGTTTTACACGT
AGGGGTGTAGGAGGTTGTAAGTCATTTCAATAACCAAAGGCGCGAATTTT
CTTTCTCCACCCAAAAGAACGCAAAGAGCTCAAACACGACTGCTGTTAGC
GGTTCCATGGGGTGGGGAAGTCCTTCTTACGCACAACGCGGGCATGAACG
CTGCGCAATGCACCACGTATTTTGCGGAGTGTTCCCCCCACAGCAGTGTA
GCAAACTGGCGTTTCCGTACATTCACTTGTGTTCTATCTCTTGCGGCCGA
GCGCTGGTGTTGATGAAGGCATCCCGATCCTCGATCTCCTCGCGATAATA
ATGTTTTTCACGCAAAGTGTTCTGCTTACATGTAGCAGGCTGCTATTTAG
CGCAATGCCTGCACCTTGTACATCCTTCATGGCACCTCTCTTGCCTCCTC
TCGACTCCCTGAACCAGCGTGCGGCCAGAATCCGCCGGCACGGCAGTCAA
GAAACTTGAGAATGAAAATGCTGATGATCCCCCATGAAATCTTTTCTGTT
GCTGGCGGAAGAGGATTTTCCCACACGTTGTTGACAGATTTTCTGAGGGT
GATTTCCGTCGGAACGAACGATTCTTGATGGTTGGCGCCACAGGTACCCA
TGTCCACGTTCATGCAGCTGATGGAGGGGAAACGCGGCGCCGACGTCGTG
GAAAGCGTCCGCGTGTCGAAGACCGGGGCGATGTTCTTCAAGATGAACGG
CAAGGAGGTAATCGCTGCTCGCTTCGGCCTCGTGGCACCGTCGATACACG
CGCGAACAACACTGGTTGGTGTTTGGCGTTTACTTGCTAGACGCTATGGT
CTTCCGTGTTGCAAGCGAGCGTACGTGGATAACGTGTGTACAATGTATGT
TAGTGGGGGGAGAGAGAGAGATGGATGAGGGGGAAGGAAGATGAGAGAGA
AAGAGAGATCGGGTGTCACCTCCAGTGTTTCATTAGGTTGTGACCACGGG
CCGAAGCGCGTTACTCTTTATCTATCGGTGCGAGCATTGGGGAAGAGTTG
AGCGCCGCGTCGAAACGTCTAGGGCAGAGTTTGCGGTGCGAAGCCGGGCA
ACCACATACGAGAAGCAACACACGGTAGCAAGCAAGGCTCGAATGCTCAA
CGGCGCACCATCCTGCCCCGCCCTCCGCTCACACCTATCATCTCCACAGT
GCTACACGTTGCCGTTGAGGGTAAGCAAGGAAGTCTTCAAGGCGCTCTGT
AACAGCGGCATTCCCTTCAGGGCTTCCAAGTCGCCGCCAGGGCTTTCTTT
CATCTTCCCTGTTGTCTACCTCCTGGCCGTCTACTATTTCATCATCAAGA
GGGGGTGAGTTTGGGTGTTACTCCTTGATGTCCCGGTGGGGTTGTTGGTG
GACGTGTGCGTTGTCGTCAAGAGCGTATTTTGTTGTTTCCTTCATGTGAG
GTGTACGGGAGGTAGGCTCACCGCGCTCGTAATTTTTCGTTCTTTTCAGT
GCGCTTTTGCGGTTGAGAAGCACGTAGTGTAGCAGTGCCCGTGGTTCGAG
CAAAGGGTGATCTCATCAAGCAATCCGGTCTCGATGGAGTTTAAACGTCG
GCACCGCTATTGTGCGTTCTCTATTTATTTCTCCTGCAATAGAACGTCCG
ATCACTCGGCCACCCGCAGTGTCTTGGTTTTCACATTGACCGACTAGTGT
GGGCGTCTTGCCCTCGTTGCGATCTTCTTGAAACGTACGGCGCAATGCCG
ACGGATCGCTGACTGCCGTGTCGATTAGTTGACCCTTCCACACGCTGTTG
GCACTCCGCTCTTCTTTGCCTAGCGTGAGATACGACGTTTCTATCGAACC
GAATCTGAGCGTGCCCTACCCCGCTGGCATGCTTGTCATGCTCTTGGCTA
TCCCGTGACCGGCGCGCTGCTTGCACCCTGTTGTGGCGCTGCTCCGTCTC
CTGGCGCATGGCCCGGACGCCAGGCAAGGGAGCATGGTCGGGTCCACGGG
CAAGCTCGCGTCGTCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1248:14442..18260+

>mRNA_Ecto-sp13_S_contig1248.2060.1 ID=mRNA_Ecto-sp13_S_contig1248.2060.1|Name=mRNA_Ecto-sp13_S_contig1248.2060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:14442..18260+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGCGCAGACAGAACCATGATGATGCAGTGGCCAGAGCTGTGCGT
TATCGTCGTGGTGGCGCTCTCGTTGAGCCCAGCTGCGGGGTTCCAAACGT
CCAACCTGTTCCTCTCTCGGCCCCAGCAGCCGACACATTCGTCGGCAGCG
GCAGCTGCAGCAGCAGCAGCTCACAGCCGTCGCCCAGCCCCTCGATTGCT
GCTCTCTTGGCCACCAAGCGCCGTACTACTTCGACCACGACGGTCTCACA
TCCACAGCCTATCTGCAGATTCAGCAGTAGGATCACCAACGAGAGCAGCA
GGGTTTTCATCAGTGCAATCACTGGAGGGCGGTGTTGGCCAGAGACTAAG
GCTGGCGGGTTCAAACACCGCGTTGGAGCTAGCAGCCAGCAGAGGCACCA
ACGGGGTGGGTGAAGAGGGGGGAAGCGGGGGGGCGGACAGCGACAAGGGT
GACGGGTGGCGGCAGCGCATGGTCCGAACCATCGTGTCCGTGGTCCTGAG
AATACGGGCAGTGGCGGCTGGGCTGGGGGCCATGCTTGGTCTGGGTCGAT
GGACCAAGAAGAGTTCTTCCTCGAACCAATCGCTGTTCAGCTCCGCCAGC
GGTAAGAAGAAGGCGGCGGCTGGGAAGCCGCGGGGTCGACGCGCGACAGC
GTTCTCGCTACTGTTCAGGAAGAGGACCGCCACGCTGCTTCTGGTGATGC
TCTTCGTGCTGGCCATGGGATTTCGTTCGGCGGGCACGCCCGCCATTACC
GAGGTACCCATGTCCACGTTCATGCAGCTGATGGAGGGGAAACGCGGCGC
CGACGTCGTGGAAAGCGTCCGCGTGTCGAAGACCGGGGCGATGTTCTTCA
AGATGAACGGCAAGGAGTGCTACACGTTGCCGTTGAGGGTAAGCAAGGAA
GTCTTCAAGGCGCTCTGTAACAGCGGCATTCCCTTCAGGGCTTCCAAGTC
GCCGCCAGGGCTTTCTTTCATCTTCCCTGTTGTCTACCTCCTGGCCGTCT
ACTATTTCATCATCAAGAGGGGGCAAGGGAGCATGGTCGGGTCCACGGGC
AAGCTCGCGTCGTCGACG
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