mRNA_Ecto-sp13_S_contig9023.20580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9023.20580.1
Unique NamemRNA_Ecto-sp13_S_contig9023.20580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A6H5KQ64_9PHAE (Amine oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQ64_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.980e-31
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSKCCSH 311
            RNV DEDVVLWHSFGLLH P     P MPCESTGFTLKPDGFFSGNPT+DL PSAGGDGKSKCCSH
Sbjct:  652 RNVEDEDVVLWHSFGLLHVPRVEDFPVMPCESTGFTLKPDGFFSGNPTIDLPPSAGGDGKSKCCSH 717          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: D8LSR3_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.040e-23
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSA 278
            RNV DEDVVLWHSFGLLH P     P MPCESTGFTLKPDGFFSGNPT+DLAPSA
Sbjct:  610 RNVEDEDVVLWHSFGLLHVPRVEDFPVMPCESTGFTLKPDGFFSGNPTIDLAPSA 664          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A7S1DXA7_HEMAN (Amine oxidase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DXA7_HEMAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.590e-16
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSKCCSH 311
            R +  +DVVLWH FG+ H P     P MPCE TGFTLKPDGF  GNP +D+ P A  +  SKCCSH
Sbjct:  264 RQLDGQDVVLWHCFGVAHIPRVEDFPVMPCEVTGFTLKPDGFSLGNPGIDIPPDA--NKASKCCSH 327          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: UPI0010F65052 (primary-amine oxidase n=1 Tax=Rhodococcus subtropicus TaxID=2545757 RepID=UPI0010F65052)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-16
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSKCC 305
            RN+ADE +V+WH+FGL H P     P MP + TGFTLKP+GFF  NPT+D+ PSA  D    CC
Sbjct:  577 RNIADEHLVVWHTFGLTHVPRPEDWPIMPVDYTGFTLKPNGFFDRNPTLDVPPSARRDEGDSCC 640          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A7S1GM92_CYCTE (Amine oxidase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM92_CYCTE)

HSP 1 Score: 82.4 bits (202), Expect = 2.890e-16
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSK--CC 305
            RN+  EDVVLWHSFG+ H P     P MPCE+TGFTLKPDGF  GNP +D+ P      +    CC
Sbjct:  255 RNIEGEDVVLWHSFGVTHVPRVEDFPVMPCETTGFTLKPDGFSMGNPAIDMPPDTNNQSELSEGCC 320          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A448ZC22_9STRA (Amine oxidase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC22_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.730e-16
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  102 TS*RRNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPS 275
            T   RN+  ED+VLWH+FG+ H P     P MPCE+TGFTLKPDGFF GNP +DL P+
Sbjct:  664 TKANRNLQGEDLVLWHAFGVAHVPRTEDFPVMPCETTGFTLKPDGFFDGNPGIDLEPT 721          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: K8EHE4_9CHLO (Amine oxidase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHE4_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 6.890e-16
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSKCCS 308
            R+++  ++V+WH+FG++H P     P MP E TGF+LKPDGFF+GNPT+DL P     GKS CCS
Sbjct:  621 RDISSGELVIWHAFGVVHIPRPEDFPVMPVEHTGFSLKPDGFFAGNPTIDLPPPK--SGKSTCCS 683          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A830HQ12_9CHLO (Amine oxidase n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HQ12_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.290e-15
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  102 TS*RRNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGK--SKCCS 308
            TS  R+V + DVV WH+FG++H P     P MPCE+TGF LKPD FF+GNP++DL P      K  S CCS
Sbjct:  652 TSKNRSVENTDVVCWHAFGVMHVPRPEDFPVMPCETTGFMLKPDNFFTGNPSIDLPPVEDKMSKEESSCCS 722          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A7S2XTZ3_9STRA (Amine oxidase n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTZ3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.770e-15
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  114 RNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAP 272
            R++  +DVVLWHSFG+ H P     P MPCE+TGF LKPDGFF+GNP +DL P
Sbjct:  682 RSIESKDVVLWHSFGVTHMPRVEDFPVMPCETTGFMLKPDGFFAGNPAIDLPP 734          
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Match: A0A2V3J6I3_9FLOR (Amine oxidase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6I3_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-15
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  102 TS*RRNVADEDVVLWHSFGLLHGPG*RISPFMPCESTGFTLKPDGFFSGNPTMDLAPSAGGDGKSKCCS 308
            TS  R++ DE +V+WHSFG+ H P     P MPCESTGFTLKPD F  GNP +D+  S   +  S CCS
Sbjct:  612 TSQNRSIVDERIVIWHSFGVAHVPRTEDFPIMPCESTGFTLKPDCFLMGNPGVDIPRSV--EKSSVCCS 678          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9023.20580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ64_9PHAE6.980e-3184.85Amine oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
D8LSR3_ECTSI9.040e-2383.64Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S1DXA7_HEMAN1.590e-1657.58Amine oxidase n=1 Tax=Hemiselmis andersenii TaxID=... [more]
UPI0010F650521.980e-1656.25primary-amine oxidase n=1 Tax=Rhodococcus subtropi... [more]
A0A7S1GM92_CYCTE2.890e-1654.55Amine oxidase n=1 Tax=Cyclophora tenuis TaxID=2168... [more]
A0A448ZC22_9STRA3.730e-1660.34Amine oxidase n=1 Tax=Pseudo-nitzschia multistriat... [more]
K8EHE4_9CHLO6.890e-1653.85Amine oxidase n=1 Tax=Bathycoccus prasinos TaxID=4... [more]
A0A830HQ12_9CHLO1.290e-1553.52Amine oxidase n=2 Tax=Pycnococcus provasolii TaxID... [more]
A0A7S2XTZ3_9STRA1.770e-1562.26Amine oxidase n=2 Tax=Attheya septentrionalis TaxI... [more]
A0A2V3J6I3_9FLOR2.380e-1553.62Amine oxidase n=1 Tax=Gracilariopsis chorda TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9023contigEcto-sp13_S_contig9023:3160..3525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.7501087-CDS-Ecto-sp13_S_contig9023:3159..35251681464175.7501087-CDS-Ecto-sp13_S_contig9023:3159..3525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9023 3160..3525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9023.20580.1prot_Ecto-sp13_S_contig9023.20580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9023 3160..3525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9023.20580.1

>prot_Ecto-sp13_S_contig9023.20580.1 ID=prot_Ecto-sp13_S_contig9023.20580.1|Name=mRNA_Ecto-sp13_S_contig9023.20580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
RACKRRLLVSSQNRYTRRACWVYGSAPHLLTPLPRVSEGTSRMRTWSCGT
LSDSFMAPGRGFPLSCRASRRASPSSPTGSSQATRRWISRRAQAGTARAS
AARTDFGVLRQICEHQTALDG*
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mRNA from alignment at Ecto-sp13_S_contig9023:3160..3525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9023.20580.1 ID=mRNA_Ecto-sp13_S_contig9023.20580.1|Name=mRNA_Ecto-sp13_S_contig9023.20580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9023:3160..3525+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCATGTAAAAGGCGTCTCCTCGTGTCCTCGCAAAATCGATATACGAG ACGTGCCTGTTGGGTCTACGGTAGTGCGCCACATCTGCTGACTCCTTTGC CACGAGTTAGCGAAGGAACGTCGCGGATGAGGACGTGGTCTTGTGGCACT CTTTCGGACTCCTTCATGGCCCCGGGTAGAGGATTTCCCCTTTCATGCCG TGCGAGTCGACGGGCTTCACCCTCAAGCCCGACGGGTTCTTCTCAGGCAA CCCGACGATGGATCTCGCGCCGAGCGCAGGCGGGGACGGCAAGAGCAAGT GCTGCTCGCACTGATTTCGGGGTGTTACGCCAGATATGCGAGCACCAGAC AGCACTTGACGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9023:3160..3525+

>mRNA_Ecto-sp13_S_contig9023.20580.1 ID=mRNA_Ecto-sp13_S_contig9023.20580.1|Name=mRNA_Ecto-sp13_S_contig9023.20580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9023:3160..3525+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCATGTAAAAGGCGTCTCCTCGTGTCCTCGCAAAATCGATATACGAG
ACGTGCCTGTTGGGTCTACGGTAGTGCGCCACATCTGCTGACTCCTTTGC
CACGAGTTAGCGAAGGAACGTCGCGGATGAGGACGTGGTCTTGTGGCACT
CTTTCGGACTCCTTCATGGCCCCGGGTAGAGGATTTCCCCTTTCATGCCG
TGCGAGTCGACGGGCTTCACCCTCAAGCCCGACGGGTTCTTCTCAGGCAA
CCCGACGATGGATCTCGCGCCGAGCGCAGGCGGGGACGGCAAGAGCAAGT
GCTGCTCGCACTGATTTCGGGGTGTTACGCCAGATATGCGAGCACCAGAC
AGCACTTGACGGGTAG
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