mRNA_Ecto-sp13_S_contig9015.20570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9015.20570.1
Unique NamemRNA_Ecto-sp13_S_contig9015.20570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.390e-87
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKSGAVIRCVDSSSRLHCSTMPP 483
            NGNRTL+CWEKGITWWSRFWAWIYLPVSATFLGL FPG+VNSEGTACFNSYREET+  EV DVAGFASNNVLLT QYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCT+GIACAY+ITT           S TNKSG V+RCV  SSR+H ST+PP
Sbjct:   72 NGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTXXXXXXXXXXXSDTNKSGVVLRCVAYSSRVHYSTVPP 232          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.460e-76
Identity = 122/144 (84.72%), Postives = 128/144 (88.89%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKSGAV 432
            NGNRTL+ WE GITWWSRFWAWIYLPVS T LGL FPG+VNSEGTACFNSY EETE  EV DVAGFA NNVLLT QYVLLLAMFIKPMLVS GNTQSGGAVYRRVVIRNIVCT+GIACAY+ITTVVVVLALLSS   T+K+ AV
Sbjct:   82 NGNRTLTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDKAAAV 225          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: A0A6H5K6Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.600e-38
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSDVAGFASNNVLLTAQ 228
            NGNRTL+ WEKGITWWSRFWAWIYLPVSAT LGL FPG+VNSEGTACFNSY EETE  EV DVAGFASNNVLLT Q
Sbjct:   78 NGNRTLTSWEKGITWWSRFWAWIYLPVSATVLGLRFPGEVNSEGTACFNSYGEETETREVGDVAGFASNNVLLTVQ 153          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 5.460e-37
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKS 423
            NGNR L+ WE  ITWWSRF+ W+ L   A FL        + EGT C     +E E    SD  GF  NN +L  Q+ LLLA+F+KP+++ QG+TQSGGAVYRR+V+RN+ CT+ I   Y +TTV+VVL  L++  G+ K+
Sbjct:   27 NGNRALAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKA 167          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.330e-36
Identity = 69/141 (48.94%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKS 423
            NGNR L+ WE  ITWWSRF+ W+ L   A FL        + EGT C     +E E    SD  GF  NN +L  Q+ LLLAMF+KP+++ QG+TQSGGAVYRR+V+RN+ CT+ I   Y +TTV+VVL  L++  G+ K+
Sbjct:  128 NGNRALAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKA 268          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.240e-35
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   16 LSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSY--REETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKSGAV 432
            L+ WEK I WWSR + W+YLP+ A  LG  FPG  +  GT C+N       +E    ++   F  NNVLL  Q++LLL +F++PMLV     QSGGAVYRRVV+RN+ CT GI  +Y ITT+VVV+ALL     +NKS  +
Sbjct:    2 LAWWEKAIRWWSRLYGWVYLPLMALMLGTRFPGGTDPAGTFCYNGIVPTGASELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQI 142          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.580e-35
Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPG---EVSDVA-GFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALL 396
            NG R LSCWEKG+ W  R +AWIYLP+++ F+   +PG  N EGT C N ++ + +     E SD A G+A  N +L  QYVLLL +F++P++V     QSGGAVYR VVIRNI CTV +  +Y+ITT+V V+ALL
Sbjct:  161 NGIRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALL 296          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.170e-33
Identity = 66/136 (48.53%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPG---EVSDVA-GFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALL 396
            NG R LSCWEKG+ W  R +AWIYLP+++ F+   +PG    +GT C NS+  + +     E SD A G+A  N +L  QYVLLL +F++P++V     QSGGAVYR VV+RN+ CT  +  +Y+ITT+V V+ALL
Sbjct:  115 NGMRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALL 250          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: D8LN53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN53_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.130e-32
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:  193 GFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKSGAV 432
            GFASNN LLT Q+VLLLAMFIKPML+ QG TQSGGAVYRRVV+RNIVCTVGIACAY+ITTVVVVLA +S+PS TNK+  +
Sbjct:    3 GFASNNALLTVQFVLLLAMFIKPMLLPQGGTQSGGAVYRRVVVRNIVCTVGIACAYVITTVVVVLAHVSTPSDTNKAAVL 82          
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.280e-30
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNSYREETEPGEVSD-VAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTN 417
            NG+R L+ WE  I W SR +AWIYLP+ A  +   F G  N E T C N Y  + +  EV + + G+ SN   L  Q+VLLL +F++P+LV    +QSG A+YRRVVI+NI CT+ +  AY +TTVVV+ ALL   + +N
Sbjct:  145 NGHRKLAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNNDSN 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9015.20570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LN54_ECTSI2.390e-8781.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPA0_9PHAE1.460e-7684.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6Y0_9PHAE1.600e-3886.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K249_9PHAE5.460e-3748.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA3_9PHAE4.330e-3648.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C9_ECTSI1.240e-3548.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG97_ECTSI2.580e-3551.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ65_9PHAE4.170e-3348.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN53_ECTSI1.130e-3280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG96_ECTSI1.280e-3046.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9015contigEcto-sp13_S_contig9015:2..1603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size486
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003530.1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.1555295-CDS-Ecto-sp13_S_contig9015:1..751681464175.1555295-CDS-Ecto-sp13_S_contig9015:1..75Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9015 2..75 +
1681464175.1680965-CDS-Ecto-sp13_S_contig9015:496..5511681464175.1680965-CDS-Ecto-sp13_S_contig9015:496..551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9015 497..551 +
1681464175.1804285-CDS-Ecto-sp13_S_contig9015:708..8071681464175.1804285-CDS-Ecto-sp13_S_contig9015:708..807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9015 709..807 +
1681464175.1969259-CDS-Ecto-sp13_S_contig9015:1157..13491681464175.1969259-CDS-Ecto-sp13_S_contig9015:1157..1349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9015 1158..1349 +
1681464175.208776-CDS-Ecto-sp13_S_contig9015:1537..16031681464175.208776-CDS-Ecto-sp13_S_contig9015:1537..1603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9015 1538..1603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9015.20570.1prot_Ecto-sp13_S_contig9015.20570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9015 2..1603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9015.20570.1

>prot_Ecto-sp13_S_contig9015.20570.1 ID=prot_Ecto-sp13_S_contig9015.20570.1|Name=mRNA_Ecto-sp13_S_contig9015.20570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
NGNRTLSCWEKGITWWSRFWAWIYLPVSATFLGLYFPGKVNSEGTACFNS
YREETEPGEVSDVAGFASNNVLLTAQYVLLLAMFIKPMLVSQGNTQSGGA
VYRRVVIRNIVCTVGIACAYMITTVVVVLALLSSPSGTNKSGAVIRCVDS
SSRLHCSTMPP*
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mRNA from alignment at Ecto-sp13_S_contig9015:2..1603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9015.20570.1 ID=mRNA_Ecto-sp13_S_contig9015.20570.1|Name=mRNA_Ecto-sp13_S_contig9015.20570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9015:2..1603+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCAACAGAACTCTCTCCTGTTGGGAAAAAGGCATTACCTGGTGGTC TCGCTTCTGGGCCTGGATATACCTGTGAGCAGAGTGACCAAATGATGAGT AATTGCCGGAACTTTCCCTCACATTCAGGCAAATCATACACTATCTCTGT CACTAGCGGCCGTCTGGCATGCGATAGACAGGTGGTTTCCCCGACACACA ATGACAAAGTAGGCTTTCTCGTTAATTCTGCGTAGTTCCAGTATTGATCT GGTCTCACCAGAACGTGCCGTCTGCTCGTCTTACATGGTTCTGTGGTTGT TGTTCTGCTTGTTGCTTGAACAAACGGCAGGTGGCACCCCGTGCGGTTTC AATTTTGTCCCAGGACCAACTGTTGTGTTCATCGTGCATGCCATCACACG CGTCGGAGTGCATTTCGCGTCAGACCTCTCGAGAAATCGCGCGTTGTTTT TGTGCTTTCTCCGGACCCCCGTTGTGTTCCTGGTCGCTTTCACAGGCCGG TATCAGCAACGTTCTTGGGCCTTTACTTTCCTGGCAAGGTAAATTCGGAG GTAAGTGCAACCGGTGTTTTGAATATTGATTTTTTCCCGTAGAATCAAAT CTCGATTCGCGCTCGAGCGCAACCACTTTGCTCGAACTCGCTCTCGTGAC ATTGCCCCACCTGATAATACGATGAAAGCCACCACCTTCCCACTCTAATT CGGTCAGGGGACGGCGTGTTTCAATAGCTACAGGGAAGAGACGGAACCTG GTGAGGTCAGCGATGTGGCTGGATTCGCTAGCAACAATGTCTTGTTGACT GCCCAGGTGAGCCAAACGCACACGTTGCGCGTCGGGCCGTTTCGACGTAA CGCAACAACCAAGGAAACTCGAAATTCCACCGCCACAGTCCTTTGAAGGG GGTAAGAAAGAGGCCATGCGTTCACAAAATGTTTTCGGGTTGGCAGGCGC ATCGTTCTCGTGTTCAACGCTTTTTCTTACCACCCGTATCGCCAGCATTG GCGGTACACCCTACAGCTCGGGGGGATAAAGCGCGACAGCGAAGGTTGTA TGCTCGCACGACAGCACCTGGACCATGTTCCTTGTGCTCGACACCCTTAC TCCTTTCCCTCTTTCATTCCTTCGGCCCTACTGTGTCACTCCAAATGACC TATCAGTACGTGCTACTACTGGCGATGTTCATAAAGCCAATGCTTGTGTC GCAAGGCAACACTCAATCCGGCGGGGCGGTGTACCGCCGGGTGGTGATCC GGAATATAGTGTGCACTGTCGGCATCGCTTGTGCGTACATGATCACGACG GTCGTGGTGGTCCTCGCGTTACTCAGCAGTCCGTCTGGTACCAACAAGGT GCGGGATCTTCTCGGTGTTGTCTACACAGACCCTTAACTGCTCCGTACGA GTTTGGTAGATTGGGGGACCGGAGCGCGCACAGATTGTTTCGGTCCTACA CTACTCACCTGCGCCGCCGACACTGTGGGTACTTGCCCGATGTGCAATAC CCCGCACATATGCTTCTCATCAAAACACGTCCGCAGAGCGGCGCCGTTAT CAGATGTGTTGACTCCTCATCGCGGCTCCACTGTTCAACCATGCCCCCTT GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9015:2..1603+

>mRNA_Ecto-sp13_S_contig9015.20570.1 ID=mRNA_Ecto-sp13_S_contig9015.20570.1|Name=mRNA_Ecto-sp13_S_contig9015.20570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9015:2..1603+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCAACAGAACTCTCTCCTGTTGGGAAAAAGGCATTACCTGGTGGTC
TCGCTTCTGGGCCTGGATATACCTGCCGGTATCAGCAACGTTCTTGGGCC
TTTACTTTCCTGGCAAGGTAAATTCGGAGGGGACGGCGTGTTTCAATAGC
TACAGGGAAGAGACGGAACCTGGTGAGGTCAGCGATGTGGCTGGATTCGC
TAGCAACAATGTCTTGTTGACTGCCCAGTACGTGCTACTACTGGCGATGT
TCATAAAGCCAATGCTTGTGTCGCAAGGCAACACTCAATCCGGCGGGGCG
GTGTACCGCCGGGTGGTGATCCGGAATATAGTGTGCACTGTCGGCATCGC
TTGTGCGTACATGATCACGACGGTCGTGGTGGTCCTCGCGTTACTCAGCA
GTCCGTCTGGTACCAACAAGAGCGGCGCCGTTATCAGATGTGTTGACTCC
TCATCGCGGCTCCACTGTTCAACCATGCCCCCTTGA
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