mRNA_Ecto-sp13_S_contig12476.2053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12476.2053.1
Unique NamemRNA_Ecto-sp13_S_contig12476.2053.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12476.2053.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 2.150e-87
Identity = 211/259 (81.47%), Postives = 213/259 (82.24%), Query Frame = 1 
Query:   67 ENMAMLPDDSTLTVAIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTTATASEPPSAEAPAASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGVVAPRGGGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAAAXXXXXXXXXXXXXXXXXXXASAVADSGRAEAADNLGFEMIDKAEVVGSGXXXXXXXXXXXXXXXXXTRSS 843
            ENMAMLPDDSTLT+AIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTTA  +EPPSAEAP ASV                  XXXXXXXX                   GGV A  GGGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAAAXXXXXXXXXXXXXXXXXXX SAV DSGRAEAADNLGFEMIDKAEVVGSG XXXXXXXXXXXXXXXXTRSS
Sbjct:   29 ENMAMLPDDSTLTIAIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTTANDNEPPSAEAPGASVTAAAETATTRSSIRAAAKXXXXXXXXEK-----------------GGVFARGGGGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAAAXXXXXXXXXXXXXXXXXXXXSAVGDSGRAEAADNLGFEMIDKAEVVGSGAXXXXXXXXXXXXXXXXTRSS 270
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BLAST of mRNA_Ecto-sp13_S_contig12476.2053.1 vs. uniprot
Match: A0A6H5K3S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.250e-43
Identity = 174/317 (54.89%), Postives = 176/317 (55.52%), Query Frame = 1 
Query:  178 MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARGSSTT--ATASEPPSAEAP-----------------------------------------------------------------------------------------AASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----GGVVAPRGGGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAAAXXXXXXXXXXXXXXXXXXXASAVADSGRAEAADNLGFEMIDKAEVVGSGXXXXXXXXXXXXXXXXXTRSS 843
            MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPS RGSSTT  ATASEPPSAEA                                                                                          A +V  XXXXXXXXX                        XXXXXXXX A    GGVVAP  GGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAA XXXXXXXXXXXXXXXXXX  SAV+DSGRAEAADNLGFEMIDKAEVVGSG           XXXXXXTRSS
Sbjct:    1 MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSGRGSSTTTIATASEPPSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXGVCETAPASPGSPAGPTTAATAAATAVGSXXXXXXXXXAPLLSPAETVGSCQPGANCSATAGXXXXXXXXGAPWEDGGVVAPVEGGEEPLSESLDLATDLELEPGVDLKADLGIVTNAPAAXXXXXXXXXXXXXXXXXXX--SAVSDSGRAEAADNLGFEMIDKAEVVGSGAGTGVNGKTRKXXXXXXTRSS 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12476.2053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHS4_ECTSI2.150e-8781.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3S6_9PHAE3.250e-4354.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12476contigEcto-sp13_S_contig12476:330..3282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size846
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006590.1
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.6969106-CDS-Ecto-sp13_S_contig12476:329..3961681462664.6969106-CDS-Ecto-sp13_S_contig12476:329..396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12476 330..396 +
1681462664.7055123-CDS-Ecto-sp13_S_contig12476:801..9201681462664.7055123-CDS-Ecto-sp13_S_contig12476:801..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12476 802..920 +
1681462664.7166328-CDS-Ecto-sp13_S_contig12476:2352..26611681462664.7166328-CDS-Ecto-sp13_S_contig12476:2352..2661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12476 2353..2661 +
1681462664.7255344-CDS-Ecto-sp13_S_contig12476:2931..32821681462664.7255344-CDS-Ecto-sp13_S_contig12476:2931..3282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12476 2932..3282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12476.2053.1prot_Ecto-sp13_S_contig12476.2053.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12476 330..3282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12476.2053.1

>prot_Ecto-sp13_S_contig12476.2053.1 ID=prot_Ecto-sp13_S_contig12476.2053.1|Name=mRNA_Ecto-sp13_S_contig12476.2053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
DSGTHPRSKSTQRLPISSSRTLENMAMLPDDSTLTVAIKDATVSTSTVNP
ARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSARG
SSTTATASEPPSAEAPAASVATAAETATTRSSIRAAAKAAKAAKAAEKAL
KLADKAAAKAADKAAGGVVAPRGGGEEPLSESLDLATDLELEPGVDLKAD
LGIVTNAPAAAAAAATAVTEVEDGGCGGAGASAVADSGRAEAADNLGFEM
IDKAEVVGSGAGTGANSKARKPWPWAWTRSS*
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mRNA from alignment at Ecto-sp13_S_contig12476:330..3282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12476.2053.1 ID=mRNA_Ecto-sp13_S_contig12476.2053.1|Name=mRNA_Ecto-sp13_S_contig12476.2053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12476:330..3282+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATAGCGGCACACATCCGCGATCGAAATCAACCCAGAGACTACCAATCAG
CAGCTCACGAACCTTAGGTAAGCAGGCATCTGTGGCTGTGATAGAGGGCA
ACGGATTCCGCGTGTCGTCGTGTAGGGAGACAGCTGTATGCATCGACAGC
AGTGGGTTCGGCGGGTTAGGTAAACAACGTCACACACCGAATCAGCTGAG
AATATTTTCCGAGATTTGAGCTGCCGTTATCTGTTGCGAAGAGTGCCCGG
CGACGACTCCGCCGTAGCAGAGGGAGAAGAAGCCCAGCAGCGAAGATGCA
GCACTTGTGCTGCGAGCAAAACCCTACGGTATGGCTGACACATCCTTCGG
GGCCACATGCTGCGGGTAGCTGGTGAATTGGTTAGAAATGGTGAAATGTG
CCCCGACTTCTCGAATTCCGCCGCTCTTCAAACCTGACAAGCTCTCGTTG
TTATTGCTTGCGTTTTCGGCAGAGAACATGGCGATGCTCCCCGATGACAG
CACCCTGACCGTAGCCATCAAGGATGCCACCGTCAGCACTTCCACGGTCA
ACCCGGCGAGGATCACGTCGGCTGTACAGAAGATGCGGCCGGTGAGCCTG
CGAAAATGACAATGCAACCCTGCTTGTTGGTGCATGTCATCATCCAACAG
CAAATTTGCAGGACATGCGGTCTATCAAAATGAAGACAGCTACCAAAAAG
GGGCAAAAAGAAGCGTTGATTCATCACAACTCGCCGCTTGTTCCGCTGTT
TTCGGCAGTTTGATTTTGTACGCGTTGTCTATCCCTGGGGGGACGCATGC
TCTTGAGATAGTCCGATTTCCTCGTTCGCTTTCCTCCCCCCGCCTATGCT
CACCCTCTTGAGGCCTTTCCCCCGTCTGGTATTTGGTCGGATTGCTGCCC
GACCGTGGCAATGCATGCGTCTGTCTCTATGTATTCGACCTCAGAGACCA
CGTGGTACGCACGCCTTCTGCGTTGTAAGTATCCAGATGCATGTTGATTT
TTGGATCCGACGACGGCGGACACTCAATCAGCCATCACTTGGATTTTGTT
GCTGCTGGTGCTACAAGAATAGTGGTGATGCTGTTGCGTACCGCCGTGTC
TATCGGCGCATGTGTCTGGGAAGCGGCCGGGTTTCTTTCTCTTTCTACAC
GCGCACATGCACAGAAGCAGCGGCAGCACCATTTCAAAAAACCCGTTTAC
AGTTGATGTATGCTAGATACACTGAGGGACGGTGTGAATCATTTTGTTGT
CGCGTTGCGGATCGGCCCAAACCCTTTCGTGCTTGTGTTTTTTCCGGTCC
TTCTGCTCGTCCAGTGCCTCTCCTCATGCACATGCTGCCTCTTTCTTCAC
GAACGTGACACATGCTGGGACGCCGTTCTACTTGAAGTTACCGCGAGAGA
CGCAGCCTACACTCGGCACGTTGCTCTTTGCCTTTTGAGTGGAAGAGTTC
ATGGAACGTATATGCATGCAGATGATTGCAACACGTGTCGGTACATGTCG
AGGACCCCGTTGGTATTTAGTTGGCTCGAAGTCGTCACGAAAGACACGAT
ACGGCGACGAACAACGCGAGCCCTTGCTTAGCATTCCCGCACGGTGTGCC
TGTTCAACCAAATTGCTGTCATGTAGGTTCCTTCAATGATGTTGCTTCTG
CTATCCAAGCTATTTTCGCCTCTGCTTTCTCACAAGTTGATGACACTAAC
ACTGCTGTGTCAACAGACATAGAGTTCACGACAAACTGGAAAAAAATTTT
TTCGTAGATTTAGGCCTACACGTTTTTGCCCACTTTTCTCTGAGCTCCAT
GGAGTGATATCTCCATGTCTCCCCTCATCATATGCAAGACTGAGCACATC
CCTTCCGACTGCGGTGGCTTTGTCTCGAACGGGTGCATAGTTCTCTGAGT
GTGTAAGGATATTTTCTACTTATACGCAACCAACGTTTCCCCTCTCGAAA
AAAAAATCAAACCGTACAGTAGTCTGTCCGTATTTTCTGACATTGAACGC
CAAAAAAACAAAATGAAAACCAGGACTGGTGCGTGAACAAGCGTCGCGTT
AAGAGGTTGCTCCGCTCGATGAACAACGATGCCTGGAAGGCGGCGGTCAA
CACGACCGTCAACGCGGGCAACCCCTCGGCGCGTGGCAGCAGCACCACCG
CCACCGCCAGCGAGCCGCCGTCGGCCGAGGCGCCGGCCGCCTCAGTGGCC
ACCGCGGCCGAAACGGCCACCACCCGCAGCAGCATCCGGGCAGCGGCCAA
GGCCGCAAAGGCCGCGAAAGCGGCCGAGAAGGCTCTAAAGCTAGCCGACA
AGGCCGCGGCCAAGGCGGCGGACAAGGCCGCGGTCGCCGCCGCGAAAGCG
GCGGCGGAATCGGCGGCGACGTCGCCGTCAGCCGGATCGGCGGCGGGTGC
GTGTGAAACCGCCCCCGCGTCGCCCGGGTCGCCGGCCGGCCCGACGACGG
CGGCCGCGGCGGCTGCGACCGCCGTCGGGTCGTCGGCGGCACCGTTGCTA
TCGCCGGCGGAGACGGCGGGGAGTTCCAAGCCCGAGGCGGATTATTCGGC
GAAAGCGGGGGCAGAGGCCGCCGCCGCCGCCGGCGGTGCGCCGTGGGACG
AGGGAGGCGTTGTCGCGCCGAGGGGGGGGGGCGAAGAGCCCCTCAGCGAG
AGCCTAGACCTTGCGACCGACTTGGAGCTCGAGCCCGGGGTTGACCTTAA
GGCCGACCTGGGGATCGTCACGAACGCCCCCGCCGCTGCCGCTGCCGCCG
CTACGGCGGTTACGGAGGTAGAAGACGGCGGCTGCGGCGGCGCCGGAGCT
TCTGCTGTCGCTGACAGCGGGCGCGCGGAAGCGGCCGACAACCTTGGGTT
CGAGATGATCGACAAGGCGGAGGTGGTAGGAAGCGGTGCCGGAACCGGCG
CCAACAGCAAGGCCCGCAAGCCGTGGCCCTGGGCTTGGACCAGGAGCAGC
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12476:330..3282+

>mRNA_Ecto-sp13_S_contig12476.2053.1 ID=mRNA_Ecto-sp13_S_contig12476.2053.1|Name=mRNA_Ecto-sp13_S_contig12476.2053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12476:330..3282+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATAGCGGCACACATCCGCGATCGAAATCAACCCAGAGACTACCAATCAG
CAGCTCACGAACCTTAGAGAACATGGCGATGCTCCCCGATGACAGCACCC
TGACCGTAGCCATCAAGGATGCCACCGTCAGCACTTCCACGGTCAACCCG
GCGAGGATCACGTCGGCTGTACAGAAGATGCGGCCGGACTGGTGCGTGAA
CAAGCGTCGCGTTAAGAGGTTGCTCCGCTCGATGAACAACGATGCCTGGA
AGGCGGCGGTCAACACGACCGTCAACGCGGGCAACCCCTCGGCGCGTGGC
AGCAGCACCACCGCCACCGCCAGCGAGCCGCCGTCGGCCGAGGCGCCGGC
CGCCTCAGTGGCCACCGCGGCCGAAACGGCCACCACCCGCAGCAGCATCC
GGGCAGCGGCCAAGGCCGCAAAGGCCGCGAAAGCGGCCGAGAAGGCTCTA
AAGCTAGCCGACAAGGCCGCGGCCAAGGCGGCGGACAAGGCCGCGGGAGG
CGTTGTCGCGCCGAGGGGGGGGGGCGAAGAGCCCCTCAGCGAGAGCCTAG
ACCTTGCGACCGACTTGGAGCTCGAGCCCGGGGTTGACCTTAAGGCCGAC
CTGGGGATCGTCACGAACGCCCCCGCCGCTGCCGCTGCCGCCGCTACGGC
GGTTACGGAGGTAGAAGACGGCGGCTGCGGCGGCGCCGGAGCTTCTGCTG
TCGCTGACAGCGGGCGCGCGGAAGCGGCCGACAACCTTGGGTTCGAGATG
ATCGACAAGGCGGAGGTGGTAGGAAGCGGTGCCGGAACCGGCGCCAACAG
CAAGGCCCGCAAGCCGTGGCCCTGGGCTTGGACCAGGAGCAGCTGA
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