mRNA_Ecto-sp13_S_contig1247.2047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1247.2047.1
Unique NamemRNA_Ecto-sp13_S_contig1247.2047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: D8LDN4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN4_ECTSI)

HSP 1 Score: 638 bits (1646), Expect = 7.290e-214
Identity = 365/410 (89.02%), Postives = 372/410 (90.73%), Query Frame = 2
Query:  281 LPPTHASLSGGATPSAAASGPAQASGGEEVSKHIKTPHRR-QQQPQQQVSMRVGEVMSVPLAGKSVPFRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGGRVGAAAGFTIGNEGRGGGRRGGCGASGPSAGLXXXXXXXXXSGPELTGVVGLVKRLLAENVGVRPSAEEALRDEVFSAQP 1507
            LPPTH + S GA P+A ASGPAQ SGGEEV+KH+KTPHRR QQQPQQQVSM VGEVMSVPLAGKSVPFRVVKRRSKGFNSVVFEC EEQEE MGDEA RP RVVTVKVLSGGESGMGACL EVETLAFLKVKRQEAGLT ERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPI TAQ G+TASNMPSSAP LLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXX  AQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGGRVGAAA FTIGNEGRGG    GC  SGPSAGL         SGPELTGVVGLVKRLLAE+VGVRPSAEEAL+D VFS  P
Sbjct:   33 LPPTHVARSAGAAPTAGASGPAQVSGGEEVAKHVKTPHRRRQQQPQQQVSMNVGEVMSVPLAGKSVPFRVVKRRSKGFNSVVFECREEQEEAMGDEAYRPLRVVTVKVLSGGESGMGACLHEVETLAFLKVKRQEAGLTRERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPISTAQSGVTASNMPSSAPVLLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXXXAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGGRVGAAAAFTIGNEGRGG-DSSGCATSGPSAGLSASAGLSAGSGPELTGVVGLVKRLLAEDVGVRPSAEEALKDVVFSTWP 441          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A7S3UQ19_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ19_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 5.500e-15
Identity = 75/259 (28.96%), Postives = 114/259 (44.02%), Query Frame = 2
Query:  581 RVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSR-----FAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDT-----------------VPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGGRVGAAAGF 1291
            R VT+KV   G+      L+EVE L +L +K   AG  ++        FA L +W  R      ++ + LVF GGG+SLR+ + ++S  +                      +A EV+E+   L+ G+ F H++GL+H DIKP+N+ L P                       A F ++ ID G+A F + T                 V  +   T SY +PE +    W   +DVW++GCV+ E L G +V A  G 
Sbjct:   17 RPVTIKVYEVGDRWKSLGLKEVEILTYLHLK---AGYKNDEDGKNSLFFAPLVAW--REDPT--LNTLFLVFPGGGVSLRDFLESQSEHL----------------------QAEEVLELFHCLVLGLDFFHNLGLIHTDIKPENIILTPAAAAVPARATQQQSLNLVTLRG-ALFRVQYIDFGSATFENATLNPENTNSCDEAMPTPPVHNMLVSTRSYRAPEVNENKCWSYGIDVWSLGCVVFETLFGQKVSAEQGL 245          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A0C9QTD5_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_10703_1459 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9QTD5_9SPER)

HSP 1 Score: 87.4 bits (215), Expect = 4.050e-14
Identity = 67/263 (25.48%), Postives = 112/263 (42.59%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHER-SRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            ++++ +  +G    V EC + Q             +V +K++ G E    A + E++ L        E G   +R +R  ++ +WF  R      +H+C+VF   GLSL + +   S                        +    V E+ R LLE +A++HS+ L+H D+KP+NV                       +A      ++LID G+  F +     + + T  Y +PE   GL W  P D+W+VGC+L E+ TG
Sbjct:   95 YKILSKMGEGTFGQVVECWDRQSR----------ELVAIKIVRGLEKYRDAAMIEIDVLC-------EVGRNDKRGNRCVQMRNWFDYR------NHICIVFEKLGLSLYDFLRKNS---------------------YCPFPIDLVREIGRQLLESVAYMHSLQLIHTDLKPENVLFVSLEHVKWSLQNREGLKLPKTSA------VKLIDFGSTTFENQNHSSIVS-TRHYRAPEVILGLGWSYPCDIWSVGCILVELCTG 306          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A4Y7KIK6_PAPSO (Protein kinase domain-containing protein n=9 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KIK6_PAPSO)

HSP 1 Score: 85.1 bits (209), Expect = 1.800e-13
Identity = 67/262 (25.57%), Postives = 112/262 (42.75%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            + ++ +  +G    V EC + +E+          R+V +KV+        A + E++ L  L   + E G    RSR  ++ +WF  R      +H+C+VF   G SL + +                 N   S P  L      V E  R LLE +A++H + ++H D+KP+N+ L                             ++LID G+ VF +     + + T  Y +PE   GL W  P D+W++GC+L E+ +G
Sbjct:   63 YNIISKMGEGTFGRVLECWDREEK----------RMVAIKVVRSIRKYRDAAMIEIDVLQLLA--KHELG----RSRCVQIRNWFDYR------NHICIVFEKLGPSLFDFLRR---------------NKYCSLPVDL------VREFGRQLLESVAYMHDLHMIHTDLKPENILLVSSESVKLPSSKRNSRGEIQFRCLPKSSSIKLIDFGSTVFDNKEHTSIVS-TRHYRAPEVILGLGWSFPCDLWSIGCILVELCSG 280          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A351FIQ6_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A351FIQ6_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 6.160e-13
Identity = 67/230 (29.13%), Postives = 96/230 (41.74%), Query Frame = 2
Query:  581 RVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFD--LRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            R   VK++   +    A + E++ L  ++    E      R     L +WF  R       H+C+VF   GLSL E +                            + AH V    R LL  +AFLH++ LVH D+KP+N+ L                        + P D  +RLID G+A F +     V + T  Y +PE   G+ W  P DVW+VGC+L E+LTG
Sbjct:   26 RYCAVKIIRNVQKYRDAAMIEIDVLKTVQKSDPEG-----RYNCIMLENWFDYRG------HICMVFEKCGLSLFEFLRKNH---------------------YKPFSAHLVQTFGRQLLHAVAFLHTLKLVHTDLKPENILLLSSAYQRVPVSSGSKF------TKRVPMDSTIRLIDFGSATFENQYHSTVVS-TRHYRAPEVILGMGWSYPCDVWSVGCILIELLTG 216          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A1Y1ICC0_KLENI (Putative serine/threonine-protein kinase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICC0_KLENI)

HSP 1 Score: 83.6 bits (205), Expect = 6.640e-13
Identity = 71/262 (27.10%), Postives = 113/262 (43.13%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            ++++ +  +G    V EC +       DEA    + V +KV+   +    A + E++ L  L+ K  + GL     R   L SWF  R       H+C+VF   G SL + +                           A+    V    R LLE +A++H + L+H D+KP+N+ L                     A++    D++LID G+A F +     V + T  Y +PE   GL W  P D+W+VGC+L E++TG
Sbjct:   84 YKILSKMGEGTFGRVLECWDR------DEA----QYVAIKVIRNVQKYRDAAMIEIDVLQTLQ-KHDKGGLR----RCVALKSWFDYR------HHICMVFERLGPSLFDFLKRNQ---------------------YRAFPLDMVRAFGRQLLESVAYMHELTLIHTDLKPENILLVSSDYSKVPESKGSKYFKRVPASS----DIKLIDFGSATFDNQYHCSVVS-TRHYRAPEVILGLGWSFPCDLWSVGCILVELVTG 298          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: G7J2X1_MEDTR (Kinase AFC1 n=8 Tax=IRL clade TaxID=2233839 RepID=G7J2X1_MEDTR)

HSP 1 Score: 82.0 bits (201), Expect = 1.860e-12
Identity = 66/264 (25.00%), Postives = 109/264 (41.29%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPR-VVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTGG 1267
            ++++ +  +G    V EC            DR  R  V +KV+   +    A + EV+ L   ++ + + G     S   ++ +WF  R      +H+C+VF   G SL + +                            +    V E  R LLE +AF+H + L+H D+KP+N+ L                             ++LID G+  FA+ +   + + T  Y +PE   GL W  P D+W+VGC+L E+ TGG
Sbjct:   74 YKILSKMGEGTFGRVLECW-----------DRQTRDYVAIKVIRSIKKYRDAAMIEVDVLE--RLVKSDVGC----SSCVQILNWFDYR------NHICIVFEKLGPSLFDFLKRNK---------------------YCPFPVDLVREFGRQLLESVAFMHELRLIHTDLKPENILLVSSDYVKLPSCKRVMSDETQFRCLPKSSAIKLIDFGSTAFANQSHSSIVS-TRHYRAPEVILGLGWSSPCDLWSVGCILIELCTGG 292          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A0D2Q9G5_GOSRA (Protein kinase domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2Q9G5_GOSRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.320e-12
Identity = 63/262 (24.05%), Postives = 105/262 (40.08%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            ++++ +  +G    V EC + Q              V +KV+        A + EV+ L  L   + + G +H    F ++ +WF  R      +H+C+VF   G SL + +                            +    V E  R LLE +A++H + L+H D+KP+N+ L                             ++LID G+  F +     + + T  Y +PE   GL W  P D+W+VGC+L E+ TG
Sbjct:   65 YKILSKMGEGTFGRVLECWDRQNR----------EYVAIKVVRSIRKYRDAAMIEVDVLEHLA--KNDKGTSH----FVQIRNWFDYR------NHICIVFERLGPSLFDFLKRNK---------------------YCPFPVDLVREFGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYVKLPGCKRSSSDETHFRCLPKSSAIKLIDFGSTAFDNQNHSSIVS-TRHYRAPEIILGLGWSYPCDLWSVGCILIELCTG 282          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: A0A5P1E6X6_ASPOF (Protein kinase domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E6X6_ASPOF)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-12
Identity = 70/270 (25.93%), Postives = 121/270 (44.81%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHER--SRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAM---SARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQA---PFDLRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            +R+  +  +G    V EC + + + M          V +K++ G +    A + EV+ L       Q+ G  H+R  SR  ++ +WF  R      +H+C+VF   G SL + +   S RS PI                          V E+AR LLE +AF+H + L+H D+KP+N+ L                     ++++       +++ID G++ +A+     + + T  Y +PE   GL W  P D+W++GC+L E+ +G
Sbjct:  100 YRIHSKMGEGTFGQVLECWDRERKEM----------VAIKIVRGIKKYRDAAMIEVDVL-------QQLG-KHDRDGSRCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNSYRSFPIDL------------------------VRELARQLLECVAFMHDLRLIHTDLKPENILLVSSEYIEIPDYKGSSRSSKNASSSKRLPKSSAIKVIDFGSSTYANKDHSYIVS-TRHYRAPEVILGLGWSYPCDIWSIGCILVELCSG 320          
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Match: UPI00192225A6 (serine/threonine-protein kinase AFC2-like isoform X1 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI00192225A6)

HSP 1 Score: 81.6 bits (200), Expect = 3.070e-12
Identity = 66/264 (25.00%), Postives = 112/264 (42.42%), Query Frame = 2
Query:  479 FRVVKRRSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEVETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGLSLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEGIAFLHSVGLVHADIKPDNVALYPXXXXXXXXXXXXXXXXXXXAAAQAPFD--LRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVLHEILTG 1264
            +++ ++  +G    V EC + + + M          V +KV+   +    A + E+E L +L    +  G      R  +L +WF  R      +H+C+VF   G SL + +   +                        +    V E+ R LLE +AF+H + L+H D+KP+N+                          + P    +++IDLG+AVF       + + T  Y +PE   GL WG P D+W+VGC+L E+ +G
Sbjct:   97 YKIYRKVGEGTFGQVLECLDRETKEM----------VAIKVVRSIKKYREAAMMELEVLQYLGKHDRNGG------RCVQLLNWFDYR------NHICIVFEMLGPSLYDFLQKNN---------------------YRPFPVDLVRELGRQLLECVAFIHDLHLIHTDLKPENILFVSPEYVKIPDEVISCSAIRDTCHRRLPKSSAIKVIDLGSAVFEHQDHNYIVS-TRHYRAPEVILGLGWGYPCDLWSVGCILVELCSG 316          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1247.2047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN4_ECTSI7.290e-21489.02Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S3UQ19_HETAK5.500e-1528.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0C9QTD5_9SPER4.050e-1425.48TSA: Wollemia nobilis Ref_Wollemi_Transcript_10703... [more]
A0A4Y7KIK6_PAPSO1.800e-1325.57Protein kinase domain-containing protein n=9 Tax=P... [more]
A0A351FIQ6_9BACT6.160e-1329.13Non-specific serine/threonine protein kinase (Frag... [more]
A0A1Y1ICC0_KLENI6.640e-1327.10Putative serine/threonine-protein kinase n=1 Tax=K... [more]
G7J2X1_MEDTR1.860e-1225.00Kinase AFC1 n=8 Tax=IRL clade TaxID=2233839 RepID=... [more]
A0A0D2Q9G5_GOSRA2.320e-1224.05Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A5P1E6X6_ASPOF2.340e-1225.93Protein kinase domain-containing protein n=2 Tax=A... [more]
UPI00192225A63.070e-1225.00serine/threonine-protein kinase AFC2-like isoform ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1247contigEcto-sp13_S_contig1247:1956..7051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score649.4
Seed ortholog evalue1.3e-183
Seed eggNOG ortholog2880.D8LDN4
Model size4225
KEGG koko:K08287
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine/tyrosine kinase activity
EggNOG OGsKOG0667@1,KOG0671@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-19_001330.1
EC2.7.12.1
Cds size1464
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.0973725-UTR-Ecto-sp13_S_contig1247:1955..20011681462664.0973725-UTR-Ecto-sp13_S_contig1247:1955..2001Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1247 1956..2001 +
1681462664.1403952-UTR-Ecto-sp13_S_contig1247:4336..70511681462664.1403952-UTR-Ecto-sp13_S_contig1247:4336..7051Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1247 4337..7051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.1106794-CDS-Ecto-sp13_S_contig1247:2001..25531681462664.1106794-CDS-Ecto-sp13_S_contig1247:2001..2553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1247 2002..2553 +
1681462664.1204715-CDS-Ecto-sp13_S_contig1247:2992..33371681462664.1204715-CDS-Ecto-sp13_S_contig1247:2992..3337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1247 2993..3337 +
1681462664.1304417-CDS-Ecto-sp13_S_contig1247:3769..43361681462664.1304417-CDS-Ecto-sp13_S_contig1247:3769..4336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1247 3770..4336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1247.2047.1prot_Ecto-sp13_S_contig1247.2047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1247 2002..4336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1247.2047.1

>prot_Ecto-sp13_S_contig1247.2047.1 ID=prot_Ecto-sp13_S_contig1247.2047.1|Name=mRNA_Ecto-sp13_S_contig1247.2047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MIGEGQQKAPTNAVFRFTTGPTNSAQSTLSAYNAACPTQQPARQQRMQVD
NDDEENFSSPPVKRKSSAMAGDHPSPPQLPPTHASLSGGATPSAAASGPA
QASGGEEVSKHIKTPHRRQQQPQQQVSMRVGEVMSVPLAGKSVPFRVVKR
RSKGFNSVVFECCEEQEEVMGDEADRPPRVVTVKVLSGGESGMGACLQEV
ETLAFLKVKRQEAGLTHERSRFAELASWFYRRSAVGGVDHVCLVFRGGGL
SLREAMSARSPPIGTAQGGLTASNMPSSAPALLAWKAHEVVEVARGLLEG
IAFLHSVGLVHADIKPDNVALYPPPPSSSSPPQNATTATPPTAAAQAPFD
LRLIDLGNAVFASDTVPGVTAGTPSYLSPEASGGLAWGPPVDVWAVGCVL
HEILTGGRVGAAAGFTIGNEGRGGGRRGGCGASGPSAGLSASAGLSAGSG
PELTGVVGLVKRLLAENVGVRPSAEEALRDEVFSAQP*
back to top

mRNA from alignment at Ecto-sp13_S_contig1247:1956..7051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1247.2047.1 ID=mRNA_Ecto-sp13_S_contig1247.2047.1|Name=mRNA_Ecto-sp13_S_contig1247.2047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1247:1956..7051+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACACAACAACGACCTTCACCAACACCCGCACACGCTGTCCTAGGATGA TCGGAGAAGGCCAGCAGAAGGCGCCGACGAATGCGGTCTTCCGCTTCACT ACCGGCCCAACCAACAGCGCACAATCGACGCTGTCGGCGTACAACGCCGC CTGCCCAACCCAACAGCCGGCACGCCAACAGAGGATGCAGGTGGACAACG ATGATGAGGAAAACTTCAGCTCGCCCCCGGTTAAGCGAAAGAGCTCAGCG ATGGCCGGGGACCACCCATCGCCACCACAACTGCCGCCGACACACGCGTC ATTGTCTGGGGGAGCTACACCATCGGCCGCTGCCTCGGGTCCGGCTCAAG CGAGTGGCGGCGAGGAGGTTTCCAAGCACATAAAAACTCCGCATCGAAGA CAGCAGCAGCCACAGCAGCAGGTCTCCATGCGCGTTGGCGAGGTGATGAG CGTCCCGCTCGCCGGCAAGTCGGTTCCCTTTCGAGTCGTCAAGAGGCGGA GCAAGGGTTTCAACAGCGTGGTGTTCGAGTGCTGCGAGGAGCAGGAGGAG GTGATGGGGGATGAAGCCGATCGCCCTCCGCGAGTTGTCACGGTCAAGGT GTGGCGACAGCGGCAGCGCAGATGGATGTCTCTCGTCTCTGGTGGTTTCA AATCCTGTCTGCACATGCGCCGTACCGCAAGCAGTGCCTGTCACCTGTGC TGGCCACCAGGAGCTTCTATGTATTTTCGCCTCGACGCAACCGGCCCGTC TGCGTAGGAATATCTTACGTGTTGCCCAATGTTGTGAGAAACCCCATCGT TTGCATGTTCTAACATGTGTCATCTACAGCAGTACAGTACCGAAGGCGAG CGTTTCGTAATTTTTACCTTAAATGTGTACGTAGAATACCTTCACTGTAT GTACATACAAGAGTAGTGTAGGTCAACACGACCGACAGCAGTATGGATGA CTGCTGCCTCGGGCGATGGTCATGTTTTGTTCCAAGCGTGCATGGTGGAC TCATTGGACGCCTTCCGCATAACGGCGCCCGATCCAGGTCTTGTCCGGGG GAGAATCCGGCATGGGAGCATGCCTGCAAGAAGTAGAAACCCTGGCGTTC CTCAAGGTGAAGCGCCAGGAGGCGGGCTTGACGCACGAGCGGTCGCGGTT CGCCGAGCTCGCCTCCTGGTTCTACCGCCGCTCGGCCGTTGGCGGGGTCG ACCACGTGTGCCTCGTGTTTCGCGGGGGAGGGCTCTCGCTGCGGGAGGCG ATGTCGGCACGATCACCGCCGATAGGTACGGCACAAGGCGGCCTCACCGC CAGCAACATGCCTTCGTCCGCACCTGCTTTGTTGGCGTGGAAGGCCCACG AGGTGGTTGAGGTTGCTCGCGGTCTTCTCGAGGTGCGTGCCCTCCCGGCT TGTTCCGTTTTCTGTTGCTGGGTTGCTCGCCAACTTCTCCCCATATACTA CTGCTGTGCCGTGGTTGGCTGTGCAAAGCAGGTGTTCGGGGGGTTCCGAA GGTTGTGGCCGTAGTGCTGGCGGTTTTCTCGATTTTAACTAGTATATGCT TTGTATGACTGCACCGAAGGCGTGCCATGCAAGCGCGATTTTAAAACATC ACCTTGTGTAGTCCCGGCAGCTTCCGGTATCTTACCGTCCCCCACTTACG GGCCATCCTCGTCCCCCTACTCCTTTTCCAGTCTGGTTGACCGATTCCTG TCCCCTCTTTCCACCAGGGCACATTTCGCTATCTCACGGTCGTTAATACT TCCGAATTGTTCCCACCCCTTCCCACCCCACATGCCTTCTCCTGTCCGCC CCGTTCCACGCCAGGGCATCGCGTTTCTGCACTCGGTCGGATTGGTCCAC GCCGACATCAAGCCAGACAACGTCGCCCTCTACCCCCCGCCACCTTCCAG TAGCTCACCGCCTCAAAACGCGACAACGGCGACGCCGCCAACAGCGGCAG CACAAGCCCCGTTCGACCTCCGTCTTATCGATCTCGGCAACGCGGTGTTC GCCTCGGACACGGTGCCCGGAGTCACGGCGGGGACCCCGTCGTACCTCTC GCCCGAGGCCAGCGGCGGGCTTGCCTGGGGCCCGCCCGTCGACGTCTGGG CCGTCGGTTGCGTCCTGCACGAGATCTTGACGGGCGGACGAGTAGGCGCC GCGGCCGGATTTACCATTGGCAACGAGGGTCGCGGCGGTGGCCGTCGTGG CGGTTGTGGCGCCTCTGGGCCTTCGGCGGGACTGTCAGCTTCAGCGGGAC TGTCAGCAGGGTCGGGGCCGGAACTGACGGGCGTAGTGGGTCTAGTGAAG CGCCTGCTGGCGGAGAATGTGGGCGTGAGGCCCAGCGCCGAGGAGGCCCT GAGGGACGAGGTATTCTCTGCACAGCCGTAAGGTGAAGGGACGTGGTGAG GGAGGTCTTCATTGACTGGGGTTGTGATCCCAAAGACTCCACGACTGTGA GTATCATTTGGGGTGGCGTGTGTGTGCTGGTCTGCCGTTGCTGGGGCATG GTGCTAAGAGAGACGTACCTCGGCATCGCGAGCATTCGAAAAGAGGGGCG GCGAGACAGGTGGACTTTGATGTGTCGGTCTCCTCGTCCTAGGGTTTGTA GCTCCTATTGCATCCTTTTAGAAGAAAAGTATGCTGTTGTCAGGGCTGAG AGTGCTCACTGCGTATTGTAGGTACCGTGTCTTGCGGCAGGTCAGACAAT CTGGCGATCCAACATCATTCTGGCAATCAGGCCTGCATGGAATTGCAACA AAATACCAAGGCTGACATACTGTTGAGCTGGAGGAGTTGGTCCCTACACC TGCTGCAGCTGTTGAGCTGCTCTGCTGCGTTTTCGTGACGCCGAGAGTTA AGTTGCTGGTATCGGTAAGGTCGAAGCACCGCAAGCGAACATGTAGAGCG AGATAGTGTTTTGCTCGGCATGTGTTGTACAGAGCAAGTGTTGTCTCAAG AGCGTGTTATCAAACGTGGTCAAATCGCACGTCACGCGATCAGATTGTCG CGTCATTAGATGTCATGAACGTCCGAATCGCGGAGGTCCCTTTCGGTCGT TTTATCTAGTTCTTCTTTGTACCATATTTTGCGGTAGCTGGACTTGAGCT CAGAGGAAGTGGTTCCCTCGCAGTTGAAGAAAGCGGGAAGTTTCCGTTTT GTCGGGGCGACTTTCGACGTGATTGCACCGATAGTATTTTGTTCGTTTTG CTGCTGTTGATAATGATAATGATGCTGATGCGATGGTAGCCGGGTCTTGG TGTATAGAATATCGCAACAGTCCCCTCTTGTTTGTTTGCCGCGGGCGCTC CCGTAGTCCATCCTCATCGTGAGGCGTACTAGCCCAGGGATATGTGTAGG CCCATTAGGGTGGTGTGTGAAAAGCTTTTTTATGCTTTCCGGGATTTTTT CCCGCAGATATTCACAGGGCCGCGTACCGTGGTATCATTCGCAGCTTTGG GGACTTCGATCGAATGCTGGCAAGAAAAAATCGAAATGCGGCAGGGTCTT CCTGAATTCAGTGGGCAGGGTGTACAAGGTACAGACAAGAAGCGTGCTTT ATGTGGTGCACGACAAACTAGCGTGCTGTACATGATAGAAGTTAGGCGCG TGCTTCAGTTGGTTCGCGGCATACTAGTGTGATGCATGAGGCTACAAAAC AGGTACATGTTTTTTTCTTGGCGCCCGTGGTGAAGCATTCACATCCAGCG CGGCACGTGGCGGCACGCAGGGTTGCGCACTTGGTATGGTTTTCCCGTAC CATAGCAAGGCTTGTAGGAGTCATAGCGAATTGGGAGCTGCGTTTTAGTG TAATGCCTCCCCGAAAGATAGAACTAGACGTGGTACGCGTGTATCCTCGC GACTTTCGTGGGGGAAACGCTGTCGGTTGGGCTTGAACCAAGTGCCCATG AGGTGGGCCAATATATGGTTGTTGTGTCAAAACGTGTCAAGAGAAAGACA ACAAGGAAAGGCACTGCGTTCCACGTGCCGTCATTGTTCAATTGTACTTT AGTAGCAATTAGCGGGGGAAGCTATGTGAACGGAGGTTCGACGAATCGTA GCCTCTCATGGCGACATGAGGACCGTGTACGGTTTTCCAAACGAGTTTCT GACCAACCTCCACTACGCTGGGGGGGTGTCAGCAAGGAAGGATTGCTATC GGTGTGCTCTCTCTCGTTGTGCTGCGCGAGTTGCCGGTTTCTTCTCCACA GTCCCTAGCCGTCTTCATGTGGTCACAGCTTTATTTGTGTATGCTGTGGA GATTTTGATGTAACTTTACGAATGTTTTCCTTGCGGCACACCAAAATTAC CATCGCCAGGCCATTAGAGCTTGTCTCGGCACGGCTTGTTGGGTGGTCGT CTTCTTTTCCTGAGTGGCACCCCAAATTCGTCGCATGCATCAAAAACGCA GATATTTCGACGTGTCGGTGTTGTGTTGAACGCGGTTACTCGACGGACGG ATAGTTGGTCACGCAGCGGTAGCCATGTCGTGGCCCATGTAGACCCTCGA CCCCTTCTGCAACATAACTAGCTCGGCGAGGACCTGTATGGCCCCGGCCA TTCGTTCCAACGACGCGCGCGCATGCCATGGCGGGGGCGATGGAATGGGA GACGATCGGGAGAAAGGGGGGTGGTGTTCTCATTCATGATGCATGGATAT CACCGTAGGGAGGTCCCAAGAGCTGAGTTTGAATGAACCAAGGAGGGGCA ACGAGGGTTGAATTTCAGCAAAGTGAACGCTCTTTCTCTCTCACGACATT TAAGAGCGAAAACGACACTTTGGTGGCGCACAAAGTGGAAGGGGTTGTAG GCATGTACGCAGTGGACGGCCTTCGAGCAAGGTATCGACTCATGTGATCG TCGGTCGTAAATATCACAGGTTTACTGCTCGACCTAGGGGCCCGTTTTCA CTCGCTTGTGCTACTGTGCTCTGGCCGAAATCAGCAAGAGGAGCCATAGC GCGAGCTTGACAAGCTGTCCAAGGAAAAGGTTGCAGACACTATCGTCTTA ATTATTTAGTATTGTTACCTGAGAGCGATTGAGGGGCTTTCCAGGCTCGG TGTTGGTCAGCACAGCGTCACACATCATCATCGCGTTGACCTCTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1247:1956..7051+

>mRNA_Ecto-sp13_S_contig1247.2047.1 ID=mRNA_Ecto-sp13_S_contig1247.2047.1|Name=mRNA_Ecto-sp13_S_contig1247.2047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1247:1956..7051+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGGAGAAGGCCAGCAGAAGGCGCCGACGAATGCGGTCTTCCGCTT
CACTACCGGCCCAACCAACAGCGCACAATCGACGCTGTCGGCGTACAACG
CCGCCTGCCCAACCCAACAGCCGGCACGCCAACAGAGGATGCAGGTGGAC
AACGATGATGAGGAAAACTTCAGCTCGCCCCCGGTTAAGCGAAAGAGCTC
AGCGATGGCCGGGGACCACCCATCGCCACCACAACTGCCGCCGACACACG
CGTCATTGTCTGGGGGAGCTACACCATCGGCCGCTGCCTCGGGTCCGGCT
CAAGCGAGTGGCGGCGAGGAGGTTTCCAAGCACATAAAAACTCCGCATCG
AAGACAGCAGCAGCCACAGCAGCAGGTCTCCATGCGCGTTGGCGAGGTGA
TGAGCGTCCCGCTCGCCGGCAAGTCGGTTCCCTTTCGAGTCGTCAAGAGG
CGGAGCAAGGGTTTCAACAGCGTGGTGTTCGAGTGCTGCGAGGAGCAGGA
GGAGGTGATGGGGGATGAAGCCGATCGCCCTCCGCGAGTTGTCACGGTCA
AGGTCTTGTCCGGGGGAGAATCCGGCATGGGAGCATGCCTGCAAGAAGTA
GAAACCCTGGCGTTCCTCAAGGTGAAGCGCCAGGAGGCGGGCTTGACGCA
CGAGCGGTCGCGGTTCGCCGAGCTCGCCTCCTGGTTCTACCGCCGCTCGG
CCGTTGGCGGGGTCGACCACGTGTGCCTCGTGTTTCGCGGGGGAGGGCTC
TCGCTGCGGGAGGCGATGTCGGCACGATCACCGCCGATAGGTACGGCACA
AGGCGGCCTCACCGCCAGCAACATGCCTTCGTCCGCACCTGCTTTGTTGG
CGTGGAAGGCCCACGAGGTGGTTGAGGTTGCTCGCGGTCTTCTCGAGGGC
ATCGCGTTTCTGCACTCGGTCGGATTGGTCCACGCCGACATCAAGCCAGA
CAACGTCGCCCTCTACCCCCCGCCACCTTCCAGTAGCTCACCGCCTCAAA
ACGCGACAACGGCGACGCCGCCAACAGCGGCAGCACAAGCCCCGTTCGAC
CTCCGTCTTATCGATCTCGGCAACGCGGTGTTCGCCTCGGACACGGTGCC
CGGAGTCACGGCGGGGACCCCGTCGTACCTCTCGCCCGAGGCCAGCGGCG
GGCTTGCCTGGGGCCCGCCCGTCGACGTCTGGGCCGTCGGTTGCGTCCTG
CACGAGATCTTGACGGGCGGACGAGTAGGCGCCGCGGCCGGATTTACCAT
TGGCAACGAGGGTCGCGGCGGTGGCCGTCGTGGCGGTTGTGGCGCCTCTG
GGCCTTCGGCGGGACTGTCAGCTTCAGCGGGACTGTCAGCAGGGTCGGGG
CCGGAACTGACGGGCGTAGTGGGTCTAGTGAAGCGCCTGCTGGCGGAGAA
TGTGGGCGTGAGGCCCAGCGCCGAGGAGGCCCTGAGGGACGAGGTATTCT
CTGCACAGCCGTAA
back to top