mRNA_Ecto-sp13_S_contig893.20455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig893.20455.1
Unique NamemRNA_Ecto-sp13_S_contig893.20455.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: D7FM37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM37_ECTSI)

HSP 1 Score: 1211 bits (3134), Expect = 0.000e+0
Identity = 626/731 (85.64%), Postives = 638/731 (87.28%), Query Frame = 1
Query:    1 VNDTGAAMAEHRKDAQWGVTDFIGKFHLNRMTTPNPIPGTATRVEEERNAFLEKRASSLQKTLDNIEARRRLRVRGRTRKAAITARVEVQATVGYRIDAVQSMYRSAAGTTKKQISTAKYAPDADFHALLKYVETNNVYQVRSRLRDRSSSGSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAAIRAGNEDARTLLATWPVARLKYRHSEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAVRARGGHLLVDEIITGPVLSAEQRARSKILNFSASDPVTIDSTLENSTNNTNSIESCSGSSCGPSPSGTRESDEGGRRRGGEEGEKGGDKEQRQKKIKSKLGKEIDVYLAQARDEAAGVRVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRRAAALEIAEDGGIESPLIRTATSSALLTTRSRALKKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKGIDPGGRKRALYLNDARTAFNDHELLPDPNDPGGVQVEEAGRLHALHPAMQWRKLHERPFSELQGSRDHSENVYDSILENYCPRAWNAVGAQEPLLPVRRHGPYK 2193
            +NDTGAAMAEHR+DAQWGVTDFIGKFHL+RMTTPN IPGTATRVE+ERN FLEKRASSLQKTLDNIEARRRLRV                                                                   RSRLRDRSSSGSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAAIRAGNEDA+TLLATWPVARLKYR+SEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAV ARGGHLLVDEIITGPVLSAEQRAR+KILNFSASD VTI STLENSTNNTNS +SCSGS+CGPSPSGTRESDEGGRRR             RQ+K KSKLGKEIDVYLAQARDEAAGVRVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRR AALEIAEDGGIESPLIR ATSSALLTTRSRA+KKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKG+DPGGRKRALYLND RTAFNDHELLPDPNDPGGV VEEAGRLHALHPAMQWRKLHERPFSELQGSRDHSENVYDSILENYCPRAWNAVGAQEPL PVR HGPYK
Sbjct:    1 MNDTGAAMAEHRRDAQWGVTDFIGKFHLSRMTTPNTIPGTATRVEQERNTFLEKRASSLQKTLDNIEARRRLRV-------------------------------------------------------------------RSRLRDRSSSGSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAAIRAGNEDAKTLLATWPVARLKYRNSEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAVHARGGHLLVDEIITGPVLSAEQRARAKILNFSASDAVTIASTLENSTNNTNSAKSCSGSNCGPSPSGTRESDEGGRRRXXXXXXXXXXXXXRQQKTKSKLGKEIDVYLAQARDEAAGVRVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRRVAALEIAEDGGIESPLIRAATSSALLTTRSRAMKKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKGLDPGGRKRALYLNDTRTAFNDHELLPDPNDPGGVHVEEAGRLHALHPAMQWRKLHERPFSELQGSRDHSENVYDSILENYCPRAWNAVGAQEPLFPVRGHGPYK 664          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A6H5L2K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K7_9PHAE)

HSP 1 Score: 1013 bits (2619), Expect = 0.000e+0
Identity = 520/565 (92.04%), Postives = 540/565 (95.58%), Query Frame = 1
Query:  307 MYRSAAGTTKKQISTAKYAPDADFHALLKYVETNNVYQVRSRLRDRSSSGSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAAIRAGNEDARTLLATWPVARLKYRHSEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAVRARGGHLLVDEIITGPVLSAEQRARSKILNFSASDPVTIDSTLENSTNNTNSIESCSGSSCGPSPS--GTRESDEGGRRRGGEEGEKGGDKEQRQKKIKSKLGKEIDVYLAQARDEAAGVRVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRRAAALEIAEDGGIESPLIRTATSSALLTTRSRALKKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKGIDPGGRKRALYLNDARTAFN----DHELLPDPNDPGGV 1983
            MY+SAAGTTKKQIS AKYAPDADFHALLKYVETNNVYQVRSRLRDRSS+GSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERD+QSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHR+FTPETAAIRAGNEDA+TLLATWPVARLKYR+SEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAVRARGGHLLVDEIITGPVLSAEQRAR+K +NFSA DPVT+ STLENS NNTNS++SCSGS+CGPSPS  GTRESDEGGRRRGGEEG+KGGDKEQRQ+K KSKLGKEIDVYLAQARDEAAG+RVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRR AALE+AEDGGIESPLIR ATSSALLTTRSRA+KKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKG+DPGGRKR LYLND RTA +    +  LL   ND G  
Sbjct:    1 MYQSAAGTTKKQISIAKYAPDADFHALLKYVETNNVYQVRSRLRDRSSTGSSYRLVATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDMQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRNFTPETAAIRAGNEDAKTLLATWPVARLKYRNSEFVQEWMKFLTDPDANLTTDLTAKEVLAQVRMEEHEESTAVRARGGHLLVDEIITGPVLSAEQRARAKFINFSAPDPVTVASTLENSANNTNSVKSCSGSNCGPSPSPSGTRESDEGGRRRGGEEGDKGGDKEQRQQKTKSKLGKEIDVYLAQARDEAAGMRVGGLTGQSTAYSRLVAKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRRVAALEVAEDGGIESPLIRAATSSALLTTRSRAMKKESTPHPFYGRRLLTQRLLNQREREASIKPTATIGMNKGLDPGGRKRVLYLNDTRTALSSKAAEGSLLLMCNDRGST 565          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A7S4E1W1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E1W1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.620e-10
Identity = 94/411 (22.87%), Postives = 147/411 (35.77%), Query Frame = 1
Query:   16 AAMAEHRKDAQWGVTDFIGKFHLNRMTTPNPIPGTATRVEEERNAFLEKRASSLQKTLDNIEARRRLRVRGRTRKAAITARVEVQATVGYRID-----------------AVQSMYRSAAGTTKKQISTAKY-APDADFH-------------ALLKYVETNNVYQVRSRLRD-----RSSSGSSYRLVATA-----------EEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMER---DIQSTVSLLRLLTRGGADVDA-QRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAA-----------------------IRAGNEDARTLLATWPVARLKYRHSEFVQEWMKFL 1026
            A   +  K  QWG+ DF+G++H + + +  P+PG+A   +E R A  + R   ++  ++ I+AR+   V+ + R      +  +Q  VG  +D                 A Q   R A    +  I   K  A D +F              A     +T    + R  L D     R+      R++  A           E       L  AV  G   +  +LLE GAD +  N  G  PI   W+FW             P     +  + D  R      D + TV +L +L   GAD +     N +  L  A +RGP  A+  LL   A   + D    +P T A                       +    ++   +L +WP  + + R  EF   W  +L
Sbjct:   12 AVPEDDDKTLQWGLVDFLGRYHKHAIASDFPVPGSAVSRDELREAQYKGRIDGIRDRVNGIQARKGESVQEKVRHETFALKALIQKRVGSTLDRXXXXXXXXXXXXXXFDAEQGRSRIAKYIEEAVIEPPKPPAGDGEFDDDGELAGTTEGEIAWNVSCKTQEFLKDRKELHDWWDAVRAGDSERLRILFLAGFTRPDQWDPLEPAIQTVALELAVRRGDAAMVELLLEFGADPNKKNAGGFGPIQSSWQFW------------GPTHAADRMTQRDEGRRLSALADERRTVDMLVMLLASGADANTLSPENRKCVLMEAVKRGPVQAVCALLQYGADESLPDINRVSPLTVAQDQVSADRVNAALLGPERAKWRRVNPERKEILRILKSWPSLQKEQRDDEFFGTWDTWL 410          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A7S3ZJJ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJJ5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.740e-10
Identity = 94/411 (22.87%), Postives = 147/411 (35.77%), Query Frame = 1
Query:   16 AAMAEHRKDAQWGVTDFIGKFHLNRMTTPNPIPGTATRVEEERNAFLEKRASSLQKTLDNIEARRRLRVRGRTRKAAITARVEVQATVGYRID-----------------AVQSMYRSAAGTTKKQISTAKY-APDADFH-------------ALLKYVETNNVYQVRSRLRD-----RSSSGSSYRLVATA-----------EEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMER---DIQSTVSLLRLLTRGGADVDA-QRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAA-----------------------IRAGNEDARTLLATWPVARLKYRHSEFVQEWMKFL 1026
            A   +  K  QWG+ DF+G++H + + +  P+PG+A   +E R A  + R   ++  ++ I+AR+   V+ + R      +  +Q  VG  +D                 A Q   R A    +  I   K  A D +F              A     +T    + R  L D     R+      R++  A           E       L  AV  G   +  +LLE GAD +  N  G  PI   W+FW             P     +  + D  R      D + TV +L +L   GAD +     N +  L  A +RGP  A+  LL   A   + D    +P T A                       +    ++   +L +WP  + + R  EF   W  +L
Sbjct:   12 AVPEDDDKTLQWGLVDFLGRYHKHAIASDFPVPGSAVSRDELREAQYKGRIDGIRDRVNGIQARKGESVQEKVRHETFALKALIQKRVGSTLDRXXXXXXXXXXXXXXFDAEQGRSRIAKYIEEAVIEPPKPPAGDGEFDDDGELAGTTEGEIAWNVSCKTQEFLKDRKELHDWWDAVRAGDSERLRILFLAGFTRPDQWDPLEPAIQTVALELAVRRGDAAMVELLLEFGADPNKKNAGGFGPIQSSWQFW------------GPTHAADRMTQRDEGRRLSALADERRTVDMLVMLLASGADANTLSPENRKCVLMEAVKRGPVQAVCALLQYGADESLPDINRVSPLTVAQDQVSADRVNAALLGPERAKWRRVNPERKEILRILKSWPSLQKEQRDDEFFGTWDTWL 410          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A663N2P7_ATHCN (Protein phosphatase 1 regulatory subunit 16A n=3 Tax=Strigidae TaxID=30459 RepID=A0A663N2P7_ATHCN)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-5
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQA 873
            TPLH A + G + +  +L+  GA+L AVN+ G+ P   C      D  +  +  +    +T +K++E  A  ERD+   V  +R L + GAD+DA R +G   LH AA  G   A  +LL  +A
Sbjct:  139 TPLHAAATCGHLRLVQLLIRRGANLLAVNSDGNMPYDLCEDEVTLDCIETAMAEQG---ITQEKIEEARAATERDM---VREIRQLVQAGADLDAPRGHGATLLHIAAANGYTEAAELLLEHRA 256          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A8C8ATE5_9STRI (Protein phosphatase 1 regulatory subunit 16A n=1 Tax=Otus sunia TaxID=257818 RepID=A0A8C8ATE5_9STRI)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-5
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQA 873
            TPLH A + G + +  +L++ GA+L AVN+ G+ P   C      D  +  +  +    +T +K++E  A  ERD+   V  +R L + GAD+DA R +G   LH AA  G   A  +LL  +A
Sbjct:  139 TPLHAAATCGHLRLVQLLIQRGANLLAVNSDGNMPYDLCEDEVTLDCIETAMAEQG---ITQEKIEEARAATERDM---VREIRQLAQAGADLDAPRAHGATLLHIAAANGYAEAAELLLEHRA 256          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A8D0FK82_STROC (Protein phosphatase 1 regulatory subunit 16A n=2 Tax=Strix occidentalis caurina TaxID=311401 RepID=A0A8D0FK82_STROC)

HSP 1 Score: 59.3 bits (142), Expect = 1.950e-5
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQA 873
            TPLH A + G + +  +L+  GADL AVN+ G+ P   C      D  +  +  +    +T +K++E  A  E D+   V  +R L + GAD+DA R +G   LH AA  G   A  +LL  +A
Sbjct:  139 TPLHAAATCGHLRLVQLLVRRGADLLAVNSDGNMPYDLCEDEVTLDCIETAMAEQG---ITQEKIEEARAATEHDM---VREIRQLVQAGADLDAPRGHGATLLHIAAANGYAEAAELLLEHRA 256          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A7K5Z890_9AVES (PP16A phosphatase (Fragment) n=2 Tax=Pteroclidae TaxID=56295 RepID=A0A7K5Z890_9AVES)

HSP 1 Score: 57.4 bits (137), Expect = 5.450e-5
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQA 873
            TPLH A + G + +  +L++ GADL AVN+ G+ P   C      D+ +  +  +    +T ++++E  A  ER   + V  ++ L + GAD+DA R +G   LH AA  G   A  +LL  +A
Sbjct:  137 TPLHAAATCGHLRLVQLLVQRGADLLAVNSDGNMPYDLCEDEVTLDAIETAMAEQG---ITQERIEEARATTER---AMVQEIQQLAQAGADLDAPRGHGATLLHIAAANGYGEAAELLLEHRA 254          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A3B4AQ06_9GOBI (Protein phosphatase 1, regulatory subunit 16A n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4AQ06_9GOBI)

HSP 1 Score: 57.8 bits (138), Expect = 6.230e-5
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIID-HRHFTP 909
            TPLH A + G   +  +L++AGADL AVN  G+ P   C      D     L           + + D  R  ++ ++ ++ L+ + + GAD++AQ  NG   LH AA  G ++++  LLL Q  H     H HF P
Sbjct:  135 TPLHAAATCGHTGLVQILIQAGADLLAVNADGNMPYDLC-----EDEATLELLEMAMAEQGITQDRIDECRGAKE-KTMLADLKNMIKNGADLNAQDENGTTLLHIAAANG-YVSVAELLLEQKGHAAQQYHHHFFP 264          
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Match: A0A8C4UK86_FALTI (Protein phosphatase 1 regulatory subunit 16A n=7 Tax=Falco TaxID=8952 RepID=A0A8C4UK86_FALTI)

HSP 1 Score: 57.4 bits (137), Expect = 6.630e-5
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 1
Query:  502 TPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCWRFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGGADVDAQRNNGEVAL-HTAARRGPFMALWILLLSQATHDIIDHRHFTP 909
            TPLH A + G + +  +L++ GADL AVN+ G+ P   C      D  +  +  +    +T +K++E  A  ER   S V  +R L + GAD+DA R +G   L H AA  G   A  +LL  +A     D   + P
Sbjct:  139 TPLHAAATCGHLRLVQLLIQRGADLLAVNSDGNMPYDLCEDEVTLDCIETAMAEQG---ITQEKIEEARAATER---SMVQEIRQLVQAGADLDAPRGHGGATLLHIAAANGYVEAAELLLEHRAGTSTRDEDGWEP 269          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig893.20455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FM37_ECTSI0.000e+085.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K7_9PHAE0.000e+092.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4E1W1_9STRA4.620e-1022.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZJJ5_9STRA5.740e-1022.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A663N2P7_ATHCN1.390e-534.68Protein phosphatase 1 regulatory subunit 16A n=3 T... [more]
A0A8C8ATE5_9STRI1.450e-534.68Protein phosphatase 1 regulatory subunit 16A n=1 T... [more]
A0A8D0FK82_STROC1.950e-534.68Protein phosphatase 1 regulatory subunit 16A n=2 T... [more]
A0A7K5Z890_9AVES5.450e-533.06PP16A phosphatase (Fragment) n=2 Tax=Pteroclidae T... [more]
A0A3B4AQ06_9GOBI6.230e-532.12Protein phosphatase 1, regulatory subunit 16A n=3 ... [more]
A0A8C4UK86_FALTI6.630e-533.58Protein phosphatase 1 regulatory subunit 16A n=7 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig893contigEcto-sp13_S_contig893:581..5121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1206.0
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FM37
Model size2196
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size2175
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig893.20455.1prot_Ecto-sp13_S_contig893.20455.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig893 602..5121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.366039-UTR-Ecto-sp13_S_contig893:580..6011681464165.366039-UTR-Ecto-sp13_S_contig893:580..601Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig893 581..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.3777232-CDS-Ecto-sp13_S_contig893:601..8781681464165.3777232-CDS-Ecto-sp13_S_contig893:601..878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig893 602..878 +
1681464165.3882732-CDS-Ecto-sp13_S_contig893:1299..17181681464165.3882732-CDS-Ecto-sp13_S_contig893:1299..1718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig893 1300..1718 +
1681464165.3993688-CDS-Ecto-sp13_S_contig893:1907..28831681464165.3993688-CDS-Ecto-sp13_S_contig893:1907..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig893 1908..2883 +
1681464165.4110403-CDS-Ecto-sp13_S_contig893:3180..34191681464165.4110403-CDS-Ecto-sp13_S_contig893:3180..3419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig893 3181..3419 +
1681464165.4254825-CDS-Ecto-sp13_S_contig893:4857..51211681464165.4254825-CDS-Ecto-sp13_S_contig893:4857..5121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig893 4858..5121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig893.20455.1

>prot_Ecto-sp13_S_contig893.20455.1 ID=prot_Ecto-sp13_S_contig893.20455.1|Name=mRNA_Ecto-sp13_S_contig893.20455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=725bp
MAEHRKDAQWGVTDFIGKFHLNRMTTPNPIPGTATRVEEERNAFLEKRAS
SLQKTLDNIEARRRLRVRGRTRKAAITARVEVQATVGYRIDAVQSMYRSA
AGTTKKQISTAKYAPDADFHALLKYVETNNVYQVRSRLRDRSSSGSSYRL
VATAEEKYGNTPLHRAVSLGFVEICSVLLEAGADLDAVNTMGDAPIHCCW
RFWKGDSCKYGLWRKNPYLMTTKKMKEDFARMERDIQSTVSLLRLLTRGG
ADVDAQRNNGEVALHTAARRGPFMALWILLLSQATHDIIDHRHFTPETAA
IRAGNEDARTLLATWPVARLKYRHSEFVQEWMKFLTDPDANLTTDLTAKE
VLAQVRMEEHEESTAVRARGGHLLVDEIITGPVLSAEQRARSKILNFSAS
DPVTIDSTLENSTNNTNSIESCSGSSCGPSPSGTRESDEGGRRRGGEEGE
KGGDKEQRQKKIKSKLGKEIDVYLAQARDEAAGVRVGGLTGQSTAYSRLV
AKEQLEGRRNRWPGIRDNGKDPPTGGAGSGCSGDPFGRPMTTSQRRRAAA
LEIAEDGGIESPLIRTATSSALLTTRSRALKKESTPHPFYGRRLLTQRLL
NQREREASIKPTATIGMNKGIDPGGRKRALYLNDARTAFNDHELLPDPND
PGGVQVEEAGRLHALHPAMQWRKLHERPFSELQGSRDHSENVYDSILENY
CPRAWNAVGAQEPLLPVRRHGPYK*
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mRNA from alignment at Ecto-sp13_S_contig893:581..5121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig893.20455.1 ID=mRNA_Ecto-sp13_S_contig893.20455.1|Name=mRNA_Ecto-sp13_S_contig893.20455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4541bp|location=Sequence derived from alignment at Ecto-sp13_S_contig893:581..5121+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAACGACACTGGCGCTGCGATGGCGGAGCACAGAAAGGATGCCCAGTG GGGCGTCACTGACTTCATAGGAAAATTCCACCTCAATAGAATGACAACAC CGAATCCGATCCCGGGTACAGCGACGAGGGTCGAGGAGGAGCGAAACGCC TTCCTCGAAAAGCGGGCCAGCTCGCTGCAGAAGACCCTCGACAACATCGA AGCCCGGCGACGTCTCAGGGTGAGAGGCAGAACACGAAAGGCGGCGATCA CTGCTCGAGTCGAGGTTCAAGCCACTGTGGGTTACAGGATAGATGCAGGT AAAGCGAACTGAAGAACCGTATTGCGAGGCCTTGAATTGCCGTGCAGTAC CTCTATCAATGTCCGGGATGGTCGTCTGCATACTGTAGCTATTTCATACA ATATATGAACACAAGTAGATTACAATAGTCGGCTCGTGGAGGAACCCTTC TGGTAGGAGATTAACCGAATACAAAAAACAACCTTGTGTGCGGTTGGTTT GTGCACCATCCCCGATTGCTACCGTAATTATCGGGCTTCCAACTCCCTCG AGCTCTCTACGTGTACGAAAGTGTACGGGGTAGACTCTTTAAGGATTTTC GAAAAATGTGCTGCTACACTGGCACAGACAGAACCGACTATCCAGGACAA AATTGTCATTCTCTGTGTGCATGGTTGTTTCCTGGAAATGTTGTTTTGCC CTATCCGTCGCCCCTGCAGTGCAGAGTATGTACCGAAGCGCAGCTGGCAC GACGAAGAAGCAGATATCTACAGCGAAGTACGCACCGGACGCGGATTTCC ATGCCCTCCTCAAGTACGTGGAGACCAACAACGTCTACCAGGTCCGGTCT CGATTGCGAGATCGATCATCGAGCGGTTCGAGCTATCGACTCGTTGCTAC AGCCGAGGAAAAGTACGGCAACACCCCGCTGCACAGGGCGGTCTCGCTGG GTTTCGTGGAGATTTGCAGCGTTTTGCTCGAGGCTGGAGCCGACCTTGAT GCTGTCAACACGATGGGCGACGCCCCGATCCACTGCTGCTGGCGGTTCTG GAAGGGCGACTCGTGCAAGTACGGCTTGTGGCGGAAGAACCCCTATCTCA TGACCACGAAAAAGATGAAAGAGGATTTTGCTAGAATGGTGAGCTCGAGA ACTGACTCTCCGGGACGGGAAATACAGAGCTCATGAGGCCTTCACAAACG AAACGACGGTAGGGAGTGCTCCCCTCTTGGTCTGGGCTTGATCGAATATG TGCTGCATGCTCAGCGAACATGAAACCTACACCATCAACATCAAAGCCCG CACTCGCGTTTGGGTTTTATTGCGAAGGAAAGAGACATCCAGAGCACCGT GTCGCTGCTGAGGCTGCTAACACGGGGCGGGGCGGACGTTGATGCACAGC GCAACAACGGGGAGGTCGCACTGCATACCGCCGCTCGACGGGGCCCCTTC ATGGCCCTATGGATTCTCCTGCTGAGCCAAGCCACCCATGACATCATCGA CCACCGGCACTTCACCCCGGAGACCGCCGCAATCAGGGCGGGCAACGAAG ACGCGAGGACCCTCTTGGCGACCTGGCCGGTGGCAAGACTCAAGTACCGG CACTCTGAGTTCGTTCAGGAATGGATGAAGTTTCTGACCGATCCGGACGC GAACCTGACGACGGATCTGACAGCGAAAGAGGTGCTGGCGCAGGTAAGGA TGGAGGAGCACGAAGAGAGCACGGCCGTACGCGCGAGGGGGGGGCACCTG CTGGTGGATGAGATCATCACGGGGCCCGTGCTTAGCGCGGAGCAGAGGGC TCGCTCAAAAATTCTCAACTTCTCTGCGTCGGACCCGGTGACCATCGATT CCACACTTGAGAATAGCACCAACAACACAAACAGCATCGAGTCTTGTTCG GGCAGCAGCTGCGGTCCTAGCCCTTCGGGAACGAGGGAAAGCGACGAGGG CGGGCGGAGGCGGGGGGGTGAAGAAGGGGAAAAGGGAGGGGACAAAGAAC AACGACAAAAGAAAATCAAGAGCAAGTTAGGGAAGGAGATTGATGTTTAC CTCGCCCAGGCGAGGGACGAGGCGGCGGGGGTGCGCGTCGGTGGCCTCAC AGGGCAGTCAACGGCGTACTCACGGCTGGTGGCGAAGGAACAGCTCGAGG GGCGCAGAAATCGTTGGCCAGGGATACGGGACAACGGCAAAGATCCACCC ACAGGCGGAGCGGGTTCTGGATGTTCAGGCGACCCCTTCGGGAGGCCGAT GACGACAAGCCAGCGGAGACGTGCCGCCGCTCTTGAAATTGCCGAGGATG GGGGTTAGTACGGAATTCATCGTTCTTTTTGTAGTACTGGCAAGTGTGGG ACGTTTTTTTCCTCTGGTGCGAGTTCCTTTCAACTCTATTTCGATCGCTC GCCGACCTCTTGACGGGCTGTTCTTACAGAACGCTTTATCGAAAGCTACC TTTTTGCACTTTTGAGTGTTGTCTTGGCCAAGAAGATGTCCATGTCACCC GTTGCTCGACATCCCGCTCGTGCACGTTACCGAGCCCCTCTTATCCACTG GTGACCCTTCACACACCCCCATGCGTTCGCTGCTGACGGTTAAAGCGCAG GTATAGAGAGCCCGCTCATTCGCACAGCAACGTCATCTGCGCTCCTCACC ACGCGGTCTCGGGCATTGAAGAAAGAGAGCACTCCGCACCCGTTCTACGG GCGGCGTCTGCTGACGCAACGCCTACTAAACCAGCGAGAAAGGGAGGCGA GCATCAAGCCCACCGCTACCATAGGGATGAACAAGGGTATAGACCCCGGG GGAAGGAAGCGCGCGTTGTACCTGAACGATGCTCGAACGGTCAGTGACCA GGGCTGTAGCACTGTTGCATGGCCTTGCTTGTCTGTGCTGTGGCTGATAG CGGTACACGTGCCAGTCCTACTGCGGGTGCAGGCAAGGGTTAAACTGCTT TGTGTGACCTTGAAGGTGCCGTTTAAGAACACTTCCTGCGTCGTCCGGGC AACAACCAGGTGTCACCCACATCTTGTAGATTGTTGAACGGTCCACCATG CCAAACGAAAGCCATAGGCTGCTTCAAAGCTCAAACAACCTCAGCAATAA TCGCCCCCTTGCTGTCGCTATTTTGTCCATGCAGCACGCTCGCGAGCACC CACAAGGGCGTGCCACCTAGCTGCTATGACCCACACACACGTGGTCCTCA CCTCTTCCCAATTTAGCTGCAGTCTCAGGGTGCTCACCCCCCAAGCTCAC GCAATTTCTTTGCGAGTCGGACCCACAGGGCCCCAACGTTTTGCACACGT ACAGTATGGATCCTCTGCATGCTGAAACTCCGGGTATCTTCCGAACACAA CCATGAGAAGATAGGCTCGTTCTGCGGAAGTTGCGGAAGGATCCTTACTG CTCACGTGTAATAATCGAGGATCCACCTAACATACCAAACTCATCCAAAC GCTAAACCTCCTTAACTGCTTGGGTATAGTTTCAATCGAAAATCGAACGT TGGGGCATCGAAGTATGAGTACCAGCTCTTGGGGATCGTGTCCACGGGAC CCTGCAAGCCAAGAGGAAATAGGGGAAAAGGTACTTGTTTAATGCATTTG CAGCAGTACCTTTACTTCAGGTCTGACCAAGACTAATGACACGGTTTGCT GGACGCTTCGGTAGGCCTTTCTCTTTCTTGCGGACATCATACAGCAGTGT TTAGTTTTCACGTTGCTGGCTCTGGCGATGCCAACGGCGAAATGACATGC ACTCCACCTGCTTGAGCTAAATCTCTTCCCCACACTCAAAGGGTTTCTAC AATGTAATGTACTGGTGACGCTTCTGCGTCGATTATAGGGCACACCACGG TTCAAACCGAGCCGCAAGAAGTACTGTTGAATGAAATTTCTTCGCTGTTT GTCGCCTCTTGCGCCGCCGCGAAAACTTAGTAAAATGTCACCGTCCATTC CCTGCTTCACAGCGCTCACGACGGTGTCAAAGGAGTGCAGATTGAACGGT TTTTGTACTCGGCACTCGTGGACAGATTTATCGGGCATTGCCCGAATAAG CAGGGATGCATGGGTCAACCTGTGGAACGATCGGCGGCGGGATCGGGCAG CCAAACAAATCTTTTTGCTGAGTTGCTCGTGTTGCCAACGAGGGGAGGAG GTCGGGGAGAATAGGTCGATGGCTGCAACTTTGATCCGCAGTCTAGACAT GTACAACCAACGTAAGACCCATGGGTCCGCTTAGACTGCCACGCTGCTGT TCTTCCTCGCACGCCGCTGCACAAAAGGCTTTCAACGACCACGAGCTGCT GCCGGACCCGAACGACCCCGGCGGCGTCCAAGTGGAAGAAGCGGGGCGCC TGCACGCGTTGCACCCCGCGATGCAGTGGCGGAAGCTGCACGAGCGGCCT TTCAGCGAGCTGCAGGGTAGCCGCGATCACAGCGAGAACGTCTATGACTC CATTCTCGAGAACTACTGCCCGAGGGCCTGGAACGCGGTGGGCGCCCAAG AGCCCCTGTTGCCCGTGCGGAGGCATGGGCCATACAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig893:581..5121+

>mRNA_Ecto-sp13_S_contig893.20455.1 ID=mRNA_Ecto-sp13_S_contig893.20455.1|Name=mRNA_Ecto-sp13_S_contig893.20455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig893:581..5121+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGCACAGAAAGGATGCCCAGTGGGGCGTCACTGACTTCATAGG
AAAATTCCACCTCAATAGAATGACAACACCGAATCCGATCCCGGGTACAG
CGACGAGGGTCGAGGAGGAGCGAAACGCCTTCCTCGAAAAGCGGGCCAGC
TCGCTGCAGAAGACCCTCGACAACATCGAAGCCCGGCGACGTCTCAGGGT
GAGAGGCAGAACACGAAAGGCGGCGATCACTGCTCGAGTCGAGGTTCAAG
CCACTGTGGGTTACAGGATAGATGCAGTGCAGAGTATGTACCGAAGCGCA
GCTGGCACGACGAAGAAGCAGATATCTACAGCGAAGTACGCACCGGACGC
GGATTTCCATGCCCTCCTCAAGTACGTGGAGACCAACAACGTCTACCAGG
TCCGGTCTCGATTGCGAGATCGATCATCGAGCGGTTCGAGCTATCGACTC
GTTGCTACAGCCGAGGAAAAGTACGGCAACACCCCGCTGCACAGGGCGGT
CTCGCTGGGTTTCGTGGAGATTTGCAGCGTTTTGCTCGAGGCTGGAGCCG
ACCTTGATGCTGTCAACACGATGGGCGACGCCCCGATCCACTGCTGCTGG
CGGTTCTGGAAGGGCGACTCGTGCAAGTACGGCTTGTGGCGGAAGAACCC
CTATCTCATGACCACGAAAAAGATGAAAGAGGATTTTGCTAGAATGGAAA
GAGACATCCAGAGCACCGTGTCGCTGCTGAGGCTGCTAACACGGGGCGGG
GCGGACGTTGATGCACAGCGCAACAACGGGGAGGTCGCACTGCATACCGC
CGCTCGACGGGGCCCCTTCATGGCCCTATGGATTCTCCTGCTGAGCCAAG
CCACCCATGACATCATCGACCACCGGCACTTCACCCCGGAGACCGCCGCA
ATCAGGGCGGGCAACGAAGACGCGAGGACCCTCTTGGCGACCTGGCCGGT
GGCAAGACTCAAGTACCGGCACTCTGAGTTCGTTCAGGAATGGATGAAGT
TTCTGACCGATCCGGACGCGAACCTGACGACGGATCTGACAGCGAAAGAG
GTGCTGGCGCAGGTAAGGATGGAGGAGCACGAAGAGAGCACGGCCGTACG
CGCGAGGGGGGGGCACCTGCTGGTGGATGAGATCATCACGGGGCCCGTGC
TTAGCGCGGAGCAGAGGGCTCGCTCAAAAATTCTCAACTTCTCTGCGTCG
GACCCGGTGACCATCGATTCCACACTTGAGAATAGCACCAACAACACAAA
CAGCATCGAGTCTTGTTCGGGCAGCAGCTGCGGTCCTAGCCCTTCGGGAA
CGAGGGAAAGCGACGAGGGCGGGCGGAGGCGGGGGGGTGAAGAAGGGGAA
AAGGGAGGGGACAAAGAACAACGACAAAAGAAAATCAAGAGCAAGTTAGG
GAAGGAGATTGATGTTTACCTCGCCCAGGCGAGGGACGAGGCGGCGGGGG
TGCGCGTCGGTGGCCTCACAGGGCAGTCAACGGCGTACTCACGGCTGGTG
GCGAAGGAACAGCTCGAGGGGCGCAGAAATCGTTGGCCAGGGATACGGGA
CAACGGCAAAGATCCACCCACAGGCGGAGCGGGTTCTGGATGTTCAGGCG
ACCCCTTCGGGAGGCCGATGACGACAAGCCAGCGGAGACGTGCCGCCGCT
CTTGAAATTGCCGAGGATGGGGGTATAGAGAGCCCGCTCATTCGCACAGC
AACGTCATCTGCGCTCCTCACCACGCGGTCTCGGGCATTGAAGAAAGAGA
GCACTCCGCACCCGTTCTACGGGCGGCGTCTGCTGACGCAACGCCTACTA
AACCAGCGAGAAAGGGAGGCGAGCATCAAGCCCACCGCTACCATAGGGAT
GAACAAGGGTATAGACCCCGGGGGAAGGAAGCGCGCGTTGTACCTGAACG
ATGCTCGAACGGCTTTCAACGACCACGAGCTGCTGCCGGACCCGAACGAC
CCCGGCGGCGTCCAAGTGGAAGAAGCGGGGCGCCTGCACGCGTTGCACCC
CGCGATGCAGTGGCGGAAGCTGCACGAGCGGCCTTTCAGCGAGCTGCAGG
GTAGCCGCGATCACAGCGAGAACGTCTATGACTCCATTCTCGAGAACTAC
TGCCCGAGGGCCTGGAACGCGGTGGGCGCCCAAGAGCCCCTGTTGCCCGT
GCGGAGGCATGGGCCATACAAGTAA
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