prot_Ecto-sp13_S_contig8904.20426.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8904.20426.1
Unique Nameprot_Ecto-sp13_S_contig8904.20426.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length77
Homology
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.600e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:   14 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV
Sbjct:   33 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI00052EA1C7 (small nuclear ribonucleoprotein E n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EA1C7)

HSP 1 Score: 107 bits (267), Expect = 2.000e-28
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 0
Query:    1 GSVCVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            G +C    P+ FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   46 GCLCSYFAPHRFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 121          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.020e-28
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0
Query:   14 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEVD+K + R Q+GRI+LKGDTITLMQ V
Sbjct:   35 RTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGV 97          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI000CDA0A63 (small nuclear ribonucleoprotein E n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDA0A63)

HSP 1 Score: 105 bits (261), Expect = 8.230e-28
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    4 CVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            C   P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   25 CFSLPLHDFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 97          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI00077116DA (small nuclear ribonucleoprotein E isoform X1 n=1 Tax=Parus major TaxID=9157 RepID=UPI00077116DA)

HSP 1 Score: 104 bits (260), Expect = 1.430e-27
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    4 CVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            C   P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   32 CFSLPFHDFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 104          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7K6GI65_9PASS (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Malurus elegans TaxID=720584 RepID=A0A7K6GI65_9PASS)

HSP 1 Score: 103 bits (256), Expect = 2.700e-27
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 0
Query:    8 PPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:    9 PFHRFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 77          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 102 bits (255), Expect = 5.530e-27
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    1 GSVCVPP---PPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            GSV VP         QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   12 GSVYVPDLLLSSIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI001CFEB29C (small nuclear ribonucleoprotein E-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFEB29C)

HSP 1 Score: 102 bits (254), Expect = 6.090e-27
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0
Query:   12 FQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   17 FQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 81          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7L2B266_9GRUI (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Aves TaxID=8782 RepID=A0A7L2B266_9GRUI)

HSP 1 Score: 102 bits (254), Expect = 6.820e-27
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0
Query:   12 FQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 FQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 85          
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI000522C9AB (small nuclear ribonucleoprotein E n=1 Tax=Haliaeetus albicilla TaxID=8969 RepID=UPI000522C9AB)

HSP 1 Score: 102 bits (254), Expect = 7.220e-27
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    2 SVCVP---PPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 76
            SV VP    P    QR+R+Q+WLYE   MR+EG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   10 SVSVPVVLSPSIVLQRSRIQVWLYEQVNMRLEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 87          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI1.600e-36100.00Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
UPI00052EA1C72.000e-2867.11small nuclear ribonucleoprotein E n=1 Tax=Tinamus ... [more]
A0A835YX06_9STRA2.020e-2882.54Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
UPI000CDA0A638.230e-2868.49small nuclear ribonucleoprotein E n=1 Tax=Cyaniste... [more]
UPI00077116DA1.430e-2768.49small nuclear ribonucleoprotein E isoform X1 n=1 T... [more]
A0A7K6GI65_9PASS2.700e-2771.01Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7K7U820_9CHAR5.530e-2765.82Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]
UPI001CFEB29C6.090e-2773.85small nuclear ribonucleoprotein E-like n=1 Tax=Gra... [more]
A0A7L2B266_9GRUI6.820e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
UPI000522C9AB7.220e-2765.38small nuclear ribonucleoprotein E n=1 Tax=Haliaeet... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..75
e-value: 2.8E-16
score: 70.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..74
e-value: 5.4E-16
score: 58.0
NoneNo IPR availableGENE3D2.30.30.100coord: 9..76
e-value: 3.5E-30
score: 105.7
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 10..76
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 10..76
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8904contigEcto-sp13_S_contig8904:794..1445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8904.20426.1mRNA_Ecto-sp13_S_contig8904.20426.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8904 794..1445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8904.20426.1 ID=prot_Ecto-sp13_S_contig8904.20426.1|Name=mRNA_Ecto-sp13_S_contig8904.20426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
GSVCVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
DMKNDERKQLGRIMLKGDTITLMQSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf