mRNA_Ecto-sp13_S_contig8904.20426.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8904.20426.1
Unique NamemRNA_Ecto-sp13_S_contig8904.20426.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.600e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:   40 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV
Sbjct:   33 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI00052EA1C7 (small nuclear ribonucleoprotein E n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EA1C7)

HSP 1 Score: 107 bits (267), Expect = 2.000e-28
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 GSVCVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            G +C    P+ FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   46 GCLCSYFAPHRFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 121
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.020e-28
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   40 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEVD+K + R Q+GRI+LKGDTITLMQ V
Sbjct:   35 RTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGV 97
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI000CDA0A63 (small nuclear ribonucleoprotein E n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDA0A63)

HSP 1 Score: 105 bits (261), Expect = 8.230e-28
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   10 CVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            C   P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   25 CFSLPLHDFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 97
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI00077116DA (small nuclear ribonucleoprotein E isoform X1 n=1 Tax=Parus major TaxID=9157 RepID=UPI00077116DA)

HSP 1 Score: 104 bits (260), Expect = 1.430e-27
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   10 CVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            C   P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   32 CFSLPFHDFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 104
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7K6GI65_9PASS (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Malurus elegans TaxID=720584 RepID=A0A7K6GI65_9PASS)

HSP 1 Score: 103 bits (256), Expect = 2.700e-27
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   22 PPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            P + FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:    9 PFHRFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 77
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 102 bits (255), Expect = 5.530e-27
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 GSVCVPP---PPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            GSV VP         QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   12 GSVYVPDLLLSSIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI001CFEB29C (small nuclear ribonucleoprotein E-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFEB29C)

HSP 1 Score: 102 bits (254), Expect = 6.090e-27
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   34 FQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   17 FQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 81
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: A0A7L2B266_9GRUI (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Aves TaxID=8782 RepID=A0A7L2B266_9GRUI)

HSP 1 Score: 102 bits (254), Expect = 6.820e-27
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   34 FQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            FQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 FQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 85
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BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Match: UPI000522C9AB (small nuclear ribonucleoprotein E n=1 Tax=Haliaeetus albicilla TaxID=8969 RepID=UPI000522C9AB)

HSP 1 Score: 102 bits (254), Expect = 7.220e-27
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    4 SVCVP---PPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 228
            SV VP    P    QR+R+Q+WLYE   MR+EG I+GFDEYMNLVLD+AEE+  K   RKQLGRIMLKGD ITL+QSV
Sbjct:   10 SVSVPVVLSPSIVLQRSRIQVWLYEQVNMRLEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8904.20426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI1.600e-36100.00Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
UPI00052EA1C72.000e-2867.11small nuclear ribonucleoprotein E n=1 Tax=Tinamus ... [more]
A0A835YX06_9STRA2.020e-2882.54Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
UPI000CDA0A638.230e-2868.49small nuclear ribonucleoprotein E n=1 Tax=Cyaniste... [more]
UPI00077116DA1.430e-2768.49small nuclear ribonucleoprotein E isoform X1 n=1 T... [more]
A0A7K6GI65_9PASS2.700e-2771.01Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7K7U820_9CHAR5.530e-2765.82Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]
UPI001CFEB29C6.090e-2773.85small nuclear ribonucleoprotein E-like n=1 Tax=Gra... [more]
A0A7L2B266_9GRUI6.820e-2773.85Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
UPI000522C9AB7.220e-2765.38small nuclear ribonucleoprotein E n=1 Tax=Haliaeet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8904contigEcto-sp13_S_contig8904:794..1445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score129.8
Seed ortholog evalue5.5e-28
Seed eggNOG ortholog2880.D8LD43
Preferred nameSNRPE
Model size231
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons2
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG1774@2759
Cds size231
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464163.6142426-CDS-Ecto-sp13_S_contig8904:793..9401681464163.6142426-CDS-Ecto-sp13_S_contig8904:793..940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8904 794..940 +
1681464163.6282477-CDS-Ecto-sp13_S_contig8904:1361..14451681464163.6282477-CDS-Ecto-sp13_S_contig8904:1361..1445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8904 1362..1445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8904.20426.1prot_Ecto-sp13_S_contig8904.20426.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8904 794..1445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8904.20426.1

>prot_Ecto-sp13_S_contig8904.20426.1 ID=prot_Ecto-sp13_S_contig8904.20426.1|Name=mRNA_Ecto-sp13_S_contig8904.20426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
GSVCVPPPPYFFQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
DMKNDERKQLGRIMLKGDTITLMQSV*
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mRNA from alignment at Ecto-sp13_S_contig8904:794..1445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8904.20426.1 ID=mRNA_Ecto-sp13_S_contig8904.20426.1|Name=mRNA_Ecto-sp13_S_contig8904.20426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=652bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8904:794..1445+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCTGTGTGCGTGCCCCCCCCGCCGTATTTTTTTCAGCGAACCAGGGT
GCAAATCTGGCTTTACGAGAACACCAAGATGCGGATAGAGGGACAAATCC
TCGGCTTCGACGAGTACATGAATCTGGTATTGGACGAGGCGGAAGAGGTG
AGAAGTGACGGGCGGTGAATGGGTCGTTGGACACGGAACTTACCAGCGTT
ACCGTGAGAAAATTTATGGCGACCTGCGTGCTGTGAGTCGACGTGGTGTT
CGGTCTGCTGTGTTTGGTCTGCTGCTGCGGTGTTGGACGCGCCGCATGAT
GCCGGACCTTCTTGAGTGGGTCTGGCCATTGTTTTTGTTCGTTTGGATTT
TGTTGACGAGTTGGCGGTTGCGGTGCACAACTACACAAAATAAAATTAGG
AAGGGGAGAGAAATCCGGGCTTTTTCCTGGTGCTGGTGCTGGTGCTGGTG
CTGCTGCCATGAGGGTGTGTGTGGTATTATTATACTCATGCCACGATTTT
TTTTCTGGGGTTTGGATTTCAATGGCTAAAGTAACTCGGTGTCATGCTTC
GTATGTATGTGTCTGCAGGTGGACATGAAGAACGACGAGCGCAAGCAGCT
GGGGCGCATTATGCTCAAGGGCGACACCATCACCCTCATGCAGAGCGTGT
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8904:794..1445+

>mRNA_Ecto-sp13_S_contig8904.20426.1 ID=mRNA_Ecto-sp13_S_contig8904.20426.1|Name=mRNA_Ecto-sp13_S_contig8904.20426.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8904:794..1445+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCTGTGTGCGTGCCCCCCCCGCCGTATTTTTTTCAGCGAACCAGGGT
GCAAATCTGGCTTTACGAGAACACCAAGATGCGGATAGAGGGACAAATCC
TCGGCTTCGACGAGTACATGAATCTGGTATTGGACGAGGCGGAAGAGGTG
GACATGAAGAACGACGAGCGCAAGCAGCTGGGGCGCATTATGCTCAAGGG
CGACACCATCACCCTCATGCAGAGCGTGTAA
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