prot_Ecto-sp13_S_contig890.20417.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig890.20417.1
Unique Nameprot_Ecto-sp13_S_contig890.20417.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length116
Homology
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BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Match: B5LWJ6_9PHYC (Putative cytidine deaminase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ6_9PHYC)

HSP 1 Score: 121 bits (304), Expect = 2.090e-33
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 0 
Query:    1 MKKNHMDFFAVCRQLASKSHHSRFRHGSIAVHRRSSIVGRGYNRNNIHAEVSAIKS-----IDKYHRYDNLVVYVCRVNSQGGYMNSRPCAKCVDFMQHNGVCRVYFSDSSGFSKMIFK 114
            MKK H   F +CR LA +S HS FRHGSIAV   SS+VG+G NR ++HAEVSA+K      I K  R   L VYVCRV+S G +MNSRPCAKC+ FM+  GV +VYFSD  GF+K++ +
Sbjct:    1 MKKTHETHFDMCRNLAKRSQHSTFRHGSIAVSG-SSVVGKGSNRRSLHAEVSAVKDTVKKKIGKGTR--RLKVYVCRVSSAGMFMNSRPCAKCMRFMRDAGVSKVYFSDQFGFAKIVLQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWJ6_9PHYC2.090e-3356.30Putative cytidine deaminase n=1 Tax=Feldmannia spe... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 3..102
e-value: 7.9E-12
score: 44.9
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 1..115
score: 13.626
NoneNo IPR availableGENE3D3.40.140.10coord: 1..114
e-value: 1.2E-14
score: 56.2
IPR016192APOBEC/CMP deaminase, zinc-bindingPROSITEPS00903CYT_DCMP_DEAMINASES_1coord: 48..92
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 4..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig890contigEcto-sp13_S_contig890:16505..16852 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig890.20417.1mRNA_Ecto-sp13_S_contig890.20417.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig890 16505..17124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig890.20417.1 ID=prot_Ecto-sp13_S_contig890.20417.1|Name=mRNA_Ecto-sp13_S_contig890.20417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MKKNHMDFFAVCRQLASKSHHSRFRHGSIAVHRRSSIVGRGYNRNNIHAE
VSAIKSIDKYHRYDNLVVYVCRVNSQGGYMNSRPCAKCVDFMQHNGVCRV
YFSDSSGFSKMIFKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR016193Cytidine_deaminase-like