mRNA_Ecto-sp13_S_contig890.20417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig890.20417.1
Unique NamemRNA_Ecto-sp13_S_contig890.20417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Match: Q8QNE5_ESV1K (EsV-1-134 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNE5_ESV1K)

HSP 1 Score: 292 bits (748), Expect = 1.990e-98
Identity = 159/196 (81.12%), Postives = 172/196 (87.76%), Query Frame = 3 
Query:   33 MPPASLQITPFAVSTRIHRRSQTEFYRGKRVQSEQHTRRGQRHQEHRQVPSVRQPCCLRLSRQLAGRLHELQAVRQVRRLHAAQWRVSRVLQRLQRIQQNDIQKLILINADKKTCKKVVHPISVKVWMLIGTNVDLKNSLVIANSLASGGAVHVRQLLPFRCFFFSKLFPYLVVARETNSLLHTIEPDLSLADRKL 620
            MPPASLQ+TPF +STRIHRRSQTEFY  KRVQSE+HTRRGQRHQEHRQV S+RQPC LRLSRQLA RLHELQAVRQVRR H AQWRVSRVLQRLQ IQQN+I+KL   N++++TCKKVVH ISVKVWMLIG NVDLKNSLVI NSLASG AVHVRQLLPF CFFF KL    VVARE+  LLHTI+P+LSLADRKL
Sbjct:    1 MPPASLQVTPFTISTRIHRRSQTEFYHRKRVQSEKHTRRGQRHQEHRQVLSLRQPCRLRLSRQLARRLHELQAVRQVRRFHEAQWRVSRVLQRLQWIQQNNIKKL---NSNEETCKKVVHTISVKVWMLIGPNVDLKNSLVITNSLASGEAVHVRQLLPFLCFFFPKLLSDFVVARESYPLLHTIQPNLSLADRKL 193
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BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Match: D8LPG0_ECTSI (EsV-1-134 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG0_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 3.280e-83
Identity = 144/196 (73.47%), Postives = 159/196 (81.12%), Query Frame = 3 
Query:   33 MPPASLQITPFAVSTRIHRRSQTEFYRGKRVQSEQHTRRGQRHQEHRQVPSVRQPCCLRLSRQLAGRLHELQAVRQVRRLHAAQWRVSRVLQRLQRIQQNDIQKLILINADKKTCKKVVHPISVKVWMLIGTNVDLKNSLVIANSLASGGAVHVRQLLPFRCFFFSKLFPYLVVARETNSLLHTIEPDLSLADRKL 620
            MPPASLQITPF VS RIHRRSQTEFY  +RVQSE+HTRRGQRHQE RQVP +RQPC LRLSRQLA RLHELQAV QVRRL+ A+WR SRVLQR Q IQQN+IQ L   N+ ++T KKVV+ I VKVW LIG NV LKN LVIANSLA GGAVHVRQLLPF    F +L    VVARE++ LLH ++PDLSLADRKL
Sbjct:    1 MPPASLQITPFTVSARIHRRSQTEFYHRERVQSEKHTRRGQRHQERRQVPPLRQPCRLRLSRQLARRLHELQAVLQVRRLYEAEWRGSRVLQRCQWIQQNNIQTL---NSKEETRKKVVYTIPVKVWTLIGPNVHLKNGLVIANSLAGGGAVHVRQLLPFLGILFPELLLNSVVARESDPLLHMVQPDLSLADRKL 193
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BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Match: B5LWJ6_9PHYC (Putative cytidine deaminase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ6_9PHYC)

HSP 1 Score: 121 bits (304), Expect = 4.780e-32
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 1 
Query:    1 MKKNHMDFFAVCRQLASKSHHSRFRHGSIAVHRRSSIVGRGYNRNNIHAEVSAIKS-----IDKYHRYDNLVVYVCRVNSQGGYMNSRPCAKCVDFMQHNGVCRVYFSDSSGFSKMIFK 342
            MKK H   F +CR LA +S HS FRHGSIAV   SS+VG+G NR ++HAEVSA+K      I K  R   L VYVCRV+S G +MNSRPCAKC+ FM+  GV +VYFSD  GF+K++ +
Sbjct:    1 MKKTHETHFDMCRNLAKRSQHSTFRHGSIAVSG-SSVVGKGSNRRSLHAEVSAVKDTVKKKIGKGTR--RLKVYVCRVSSAGMFMNSRPCAKCMRFMRDAGVSKVYFSDQFGFAKIVLQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig890.20417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE5_ESV1K1.990e-9881.12EsV-1-134 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPG0_ECTSI3.280e-8373.47EsV-1-134 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B5LWJ6_9PHYC4.780e-3256.30Putative cytidine deaminase n=1 Tax=Feldmannia spe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig890contigEcto-sp13_S_contig890:16505..17124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size620
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464162.9954584-CDS-Ecto-sp13_S_contig890:16504..168521681464162.9954584-CDS-Ecto-sp13_S_contig890:16504..16852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig890 16505..16852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464163.0072038-UTR-Ecto-sp13_S_contig890:16852..171241681464163.0072038-UTR-Ecto-sp13_S_contig890:16852..17124Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig890 16853..17124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig890.20417.1prot_Ecto-sp13_S_contig890.20417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig890 16505..16852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig890.20417.1

>prot_Ecto-sp13_S_contig890.20417.1 ID=prot_Ecto-sp13_S_contig890.20417.1|Name=mRNA_Ecto-sp13_S_contig890.20417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MKKNHMDFFAVCRQLASKSHHSRFRHGSIAVHRRSSIVGRGYNRNNIHAE
VSAIKSIDKYHRYDNLVVYVCRVNSQGGYMNSRPCAKCVDFMQHNGVCRV
YFSDSSGFSKMIFKN*
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mRNA from alignment at Ecto-sp13_S_contig890:16505..17124+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig890.20417.1 ID=mRNA_Ecto-sp13_S_contig890.20417.1|Name=mRNA_Ecto-sp13_S_contig890.20417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:16505..17124+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAAAACCACATGGACTTCTTCGCCGTATGCCGCCAGCTAGCCTC
CAAATCACACCATTCGCGGTTTCGACACGGATCCATCGCCGTTCACAGAC
GGAGTTCTATCGTGGGAAGAGGGTACAATCGGAACAACATACACGCCGAG
GTCAGCGCCATCAAGAGCATAGACAAGTACCATCGGTACGACAACCTTGT
TGTCTACGTTTGTCGCGTCAACTCGCAGGGCGGCTACATGAACTCCAGGC
CGTGCGCCAAGTGCGTAGACTTCATGCAGCACAATGGCGTGTGTCGCGTG
TACTTCAGCGACTCCAGCGGATTCAGCAAAATGATATTCAAAAACTAATA
TTAATAAACGCCGACAAAAAAACCTGTAAAAAGGTCGTCCACCCCATCTC
CGTCAAGGTCTGGATGCTTATCGGCACCAACGTCGATCTGAAAAATAGTC
TTGTGATTGCCAACAGTCTTGCGAGTGGCGGAGCAGTTCATGTCCGACAG
CTTCTCCCGTTTCGCTGCTTCTTCTTCTCTAAACTCTTCCCTTATCTTGT
TGTAGCACGGGAGACCAATTCTCTGCTTCACACGATCGAGCCAGATCTGA
GCCTTGCCGATCGAAAACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig890:16505..17124+

>mRNA_Ecto-sp13_S_contig890.20417.1 ID=mRNA_Ecto-sp13_S_contig890.20417.1|Name=mRNA_Ecto-sp13_S_contig890.20417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:16505..17124+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAAAACCACATGGACTTCTTCGCCGTATGCCGCCAGCTAGCCTC
CAAATCACACCATTCGCGGTTTCGACACGGATCCATCGCCGTTCACAGAC
GGAGTTCTATCGTGGGAAGAGGGTACAATCGGAACAACATACACGCCGAG
GTCAGCGCCATCAAGAGCATAGACAAGTACCATCGGTACGACAACCTTGT
TGTCTACGTTTGTCGCGTCAACTCGCAGGGCGGCTACATGAACTCCAGGC
CGTGCGCCAAGTGCGTAGACTTCATGCAGCACAATGGCGTGTGTCGCGTG
TACTTCAGCGACTCCAGCGGATTCAGCAAAATGATATTCAAAAACTAA
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