prot_Ecto-sp13_S_contig889.20385.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig889.20385.1
Unique Nameprot_Ecto-sp13_S_contig889.20385.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length328
Homology
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BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Match: D7FLY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY3_ECTSI)

HSP 1 Score: 541 bits (1395), Expect = 8.060e-193
Identity = 304/326 (93.25%), Postives = 311/326 (95.40%), Query Frame = 0 
Query:    1 MSDPRDEEAGGRCCGDSGSASANHDEPRLATAHADLPSTASASPEEEATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNVHLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEQDF-ATAGMVGGTAGXXXXXXXXTA 325
            M +PRD+EAGGRCCGD  SASANHDEPR ATAHAD  STASASPEE ATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEG+LHSLSFF+RRFKWFDFDESDLEKTTTYYCCDE+GMHNVHLTGYLIMCHK+RGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNAS NRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQE D+ A AGM GG AGXXXXXX  TA
Sbjct:    1 MPEPRDKEAGGRCCGDGESASANHDEPRSATAHADPHSTASASPEE-ATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGVLHSLSFFRRRFKWFDFDESDLEKTTTYYCCDEQGMHNVHLTGYLIMCHKVRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASTNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEHDYNAMAGMEGGRAGXXXXXXTTTA 325
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BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Match: A0A6H5J9H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H1_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 5.480e-144
Identity = 218/246 (88.62%), Postives = 233/246 (94.72%), Query Frame = 0 
Query:   66 VEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNVHLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEQDFATAGMVG 311
            V PEESLY MK VDEQAKQAVDNISTLTSFKSTI+ARTAVYDTPEG+L SL F++RRFKWFDFDESDLEKTTTYYCCDE+GMHNVHLTG+LI+CHK+RGKY+FRSCVAEFYEQVTFDQLAYKVLASSTSI GGIAASA+TGA +AWPTD FTWGTGS+V XXXXXXXXXXX VFVNVDADSKEKQIEKKLGSSLYNAS NRINSHGIME+LLLHYLLADQKYNI+GT+VRITGVQEQDF TAGM G
Sbjct:   52 VAPEESLYRMKPVDEQAKQAVDNISTLTSFKSTIMARTAVYDTPEGVLQSLRFYRRRFKWFDFDESDLEKTTTYYCCDEQGMHNVHLTGHLIICHKVRGKYIFRSCVAEFYEQVTFDQLAYKVLASSTSIAGGIAASAITGAGLAWPTDAFTWGTGSIVXXXXXXXXXXXXXVFVNVDADSKEKQIEKKLGSSLYNASTNRINSHGIMEMLLLHYLLADQKYNIDGTDVRITGVQEQDFPTAGMGG 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY3_ECTSI8.060e-19393.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H1_9PHAE5.480e-14488.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 245..327
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 212..222
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 223..244
NoneNo IPR availableTMHMMTMhelixcoord: 220..242
NoneNo IPR availableTMHMMTMhelixcoord: 188..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig889contigEcto-sp13_S_contig889:13617..15641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig889.20385.1mRNA_Ecto-sp13_S_contig889.20385.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig889 13393..16815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig889.20385.1 ID=prot_Ecto-sp13_S_contig889.20385.1|Name=mRNA_Ecto-sp13_S_contig889.20385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
MSDPRDEEAGGRCCGDSGSASANHDEPRLATAHADLPSTASASPEEEATI
RAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTIL
ARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNV
HLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIA
ASALTGAAMAWPTDVFTWGTGSVVGGLAGAVVGVVGAVFVNVDADSKEKQ
IEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQ
EQDFATAGMVGGTAGGGGGGDTTTAYH*
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