mRNA_Ecto-sp13_S_contig889.20385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig889.20385.1
Unique NamemRNA_Ecto-sp13_S_contig889.20385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Match: D7FLY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY3_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 2.800e-186
Identity = 304/326 (93.25%), Postives = 311/326 (95.40%), Query Frame = 3 
Query:  225 MSDPRDEEAGGRCCGDSGSASANHDEPRLATAHADLPSTASASPEEEATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNVHLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEQDF-ATAGMVGGTAGXXXXXXXXTA 1199
            M +PRD+EAGGRCCGD  SASANHDEPR ATAHAD  STASASPEE ATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEG+LHSLSFF+RRFKWFDFDESDLEKTTTYYCCDE+GMHNVHLTGYLIMCHK+RGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNAS NRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQE D+ A AGM GG AGXXXXXX  TA
Sbjct:    1 MPEPRDKEAGGRCCGDGESASANHDEPRSATAHADPHSTASASPEE-ATIRAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGVLHSLSFFRRRFKWFDFDESDLEKTTTYYCCDEQGMHNVHLTGYLIMCHKVRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASTNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEHDYNAMAGMEGGRAGXXXXXXTTTA 325
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BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Match: A0A6H5J9H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H1_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.670e-137
Identity = 218/246 (88.62%), Postives = 233/246 (94.72%), Query Frame = 3 
Query:  420 VEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTILARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNVHLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIAASALTGAAMAWPTDVFTWGTGSVVGXXXXXXXXXXXAVFVNVDADSKEKQIEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQEQDFATAGMVG 1157
            V PEESLY MK VDEQAKQAVDNISTLTSFKSTI+ARTAVYDTPEG+L SL F++RRFKWFDFDESDLEKTTTYYCCDE+GMHNVHLTG+LI+CHK+RGKY+FRSCVAEFYEQVTFDQLAYKVLASSTSI GGIAASA+TGA +AWPTD FTWGTGS+V XXXXXXXXXXX VFVNVDADSKEKQIEKKLGSSLYNAS NRINSHGIME+LLLHYLLADQKYNI+GT+VRITGVQEQDF TAGM G
Sbjct:   52 VAPEESLYRMKPVDEQAKQAVDNISTLTSFKSTIMARTAVYDTPEGVLQSLRFYRRRFKWFDFDESDLEKTTTYYCCDEQGMHNVHLTGHLIICHKVRGKYIFRSCVAEFYEQVTFDQLAYKVLASSTSIAGGIAASAITGAGLAWPTDAFTWGTGSIVXXXXXXXXXXXXXVFVNVDADSKEKQIEKKLGSSLYNASTNRINSHGIMEMLLLHYLLADQKYNIDGTDVRITGVQEQDFPTAGMGG 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig889.20385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY3_ECTSI2.800e-18693.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H1_9PHAE1.670e-13788.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig889contigEcto-sp13_S_contig889:13393..16815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2335
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000170.1
Cds size984
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.0096083-UTR-Ecto-sp13_S_contig889:13392..136161681464161.0096083-UTR-Ecto-sp13_S_contig889:13392..13616Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig889 13393..13616 +
1681464161.0426996-UTR-Ecto-sp13_S_contig889:15641..164721681464161.0426996-UTR-Ecto-sp13_S_contig889:15641..16472Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig889 15642..16472 +
1681464161.0529172-UTR-Ecto-sp13_S_contig889:16519..168151681464161.0529172-UTR-Ecto-sp13_S_contig889:16519..16815Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig889 16520..16815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.022023-CDS-Ecto-sp13_S_contig889:13616..136921681464161.022023-CDS-Ecto-sp13_S_contig889:13616..13692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig889 13617..13692 +
1681464161.0329995-CDS-Ecto-sp13_S_contig889:14733..156411681464161.0329995-CDS-Ecto-sp13_S_contig889:14733..15641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig889 14734..15641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig889.20385.1prot_Ecto-sp13_S_contig889.20385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig889 13617..15641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig889.20385.1

>prot_Ecto-sp13_S_contig889.20385.1 ID=prot_Ecto-sp13_S_contig889.20385.1|Name=mRNA_Ecto-sp13_S_contig889.20385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
MSDPRDEEAGGRCCGDSGSASANHDEPRLATAHADLPSTASASPEEEATI
RAEPAAPPPTSRRRPVEPEESLYSMKHVDEQAKQAVDNISTLTSFKSTIL
ARTAVYDTPEGILHSLSFFKRRFKWFDFDESDLEKTTTYYCCDERGMHNV
HLTGYLIMCHKIRGKYVFRSCVAEFYEQVTFDQLAYKVLASSTSIVGGIA
ASALTGAAMAWPTDVFTWGTGSVVGGLAGAVVGVVGAVFVNVDADSKEKQ
IEKKLGSSLYNASMNRINSHGIMEVLLLHYLLADQKYNIEGTEVRITGVQ
EQDFATAGMVGGTAGGGGGGDTTTAYH*
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mRNA from alignment at Ecto-sp13_S_contig889:13393..16815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig889.20385.1 ID=mRNA_Ecto-sp13_S_contig889.20385.1|Name=mRNA_Ecto-sp13_S_contig889.20385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig889:13393..16815+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACACCCTGTCGCGCTCGCTACCGTAACGTGGTGTGCGCGAGCAGTAGG
AGCGGCAAGGAGAGAGGAGGAGCACTAGGGGGGGGAGATTTTTCAGGTGG
TCCTAGTGATTTGTTTCCTGTGGAGCTCGCGCAAGGGCAGAGGGCAATTC
TCCCGACAGCCCAACAGCACAGCAGAGTTTGGAAAGTTAGAAGTCGGAAC
TCGGCCTTCTGGGCAGGGAGGGCAATGTCGGATCCTCGTGATGAGGAGGC
TGGTGGACGATGCTGTGGGGATAGTGGGTCTGCTTCTGCGAATCACGACG
GTGAGTTAGACTGCACCACTCATTTTCATTTCATTCGCGCCCTCACGCCC
CGACGCACACGAATCTACTGTTGCAGTCCTTCTTCAGCCACGGTCGGTAC
GTGCACATGTAGTTCCACAGCACGGATGGTCATGTCTGCTGCAAGGTATG
CGCACGAGAAAGAGAGAGGGAGAGGAGAGAGAAAGTTGCCGTTGCATCAC
GGTTGAACGTTGAGCTTCAACTTCAAAGGCGAAAAGTTTATCGAGGGACA
GCGGTAACGTGCGCAACAGCAGTACCTACGAAAGCCGTGGTTGCAACCCT
CTAACGATAATGAATGTATTTCTTTCGTACGGCCCTCCCTTCGATGACCG
ACTTACATCAGGTGTTCCTCGCAGCAGTAGAAATGTTTTAGTATCTTTTT
TATCCACGTCAATTCTAGTACTATGCGATAGTGCTGGAGCAGTCTACAAA
TCATAATCATTGGCAACGCGGCACGATGTCACCAAAAAACACCCCCAGGA
AGATCGCGTAACTTCGCGTTTTCTGGCCGGATCTGGACTGCTGTGCATGG
CAGTCTCAACGCTAACCGACGTCGAAATCACACTGGGTTGCAAAGAGGAT
TTGCTTTGTGGTTGTGGAAGCTTTGATGGTCAAAAGGCCCTCACGCCCGA
ATGGGTTCCAACAACGAAGCCGCGATAATGTTGGCAGAGCCGCAGGTGTG
TTTGTGGGGCAACTATCAACTTTACCGTGCTCATGTAAGCGTGCACCTCA
ACCAGTTTCTGTCTCGACCCTCTCGGCCCAGACGGAACATGAAACATGCA
TACACATCGAGTTACCTTCCCGACGCTGTTGTCTGCGACCCTTGATCCCT
TTCAGCAACTTACAACTTGGTCGTACCCATGTAGGAGTGCGCCGCAAGCG
CTGGTTCCCATGTAGGCCCTTTCGGACCAGAATGAGGCATACACACCAAT
AAATACCACATGTACGCATCGACAAGCAATAGCCGAATTCCACGCCAGCT
ATTGATTGCGACCTTCGCTCCCTCTCGGCCCTGCTGTTTAGAACCCCGCT
TGGCGACGGCGCATGCCGACCTTCCTTCGACGGCATCAGCGTCGCCAGAA
GAAGAAGCGACAATACGCGCTGAGCCTGCGGCACCTCCGCCCACCTCAAG
AAGAAGACCTGTTGAGCCCGAGGAGTCTTTGTACAGCATGAAGCACGTCG
ATGAACAGGCGAAGCAGGCGGTGGACAACATCTCGACCCTGACGTCGTTC
AAGTCGACCATCCTGGCCCGGACGGCCGTCTACGACACGCCCGAGGGCAT
CCTCCACTCGCTCAGCTTCTTCAAGAGGAGGTTCAAGTGGTTCGACTTCG
ACGAGTCGGACCTGGAGAAGACCACCACCTACTACTGCTGCGACGAGCGG
GGCATGCACAACGTCCACCTCACGGGCTACCTCATCATGTGCCACAAGAT
CCGCGGGAAGTACGTCTTCCGCTCCTGTGTCGCCGAGTTTTACGAGCAGG
TGACTTTCGACCAGCTGGCGTACAAAGTCCTCGCCTCCAGCACGTCCATC
GTCGGTGGCATTGCCGCAAGCGCGCTCACGGGGGCTGCTATGGCGTGGCC
CACGGACGTGTTTACGTGGGGAACGGGCTCCGTAGTAGGGGGGCTAGCGG
GAGCCGTCGTGGGGGTCGTCGGCGCCGTGTTTGTCAACGTGGACGCGGAC
TCCAAGGAGAAGCAGATCGAGAAGAAGCTCGGGTCCAGCCTGTACAACGC
CAGCATGAACAGGATCAACAGCCACGGGATCATGGAGGTGCTTCTCCTCC
ACTACCTCCTGGCCGACCAAAAGTACAACATCGAGGGGACCGAGGTCCGC
ATCACCGGCGTGCAAGAGCAAGACTTCGCCACGGCCGGGATGGTTGGGGG
TACAGCCGGCGGCGGCGGCGGCGGCGATACAACAACCGCATATCACTGAC
TTGGGGTGACTTGTAGCGAAATAGATGCTAGATCGCCCCTTCAGACAGAT
TCAATCTAAGTGAAATGGTTAGATGGCCCCATCAGGCCGACTCAATCCCG
CCGTCGAAGATGGAATGATGGCATGCAGCGTAGCACGAGACCGTCTTGGG
TGTGTGGCTGGTGTGTTCGGGGGTATGTAAATAGCGTGCAAATATTTTCT
AGAGTCTCTAACTTTCGATGCGTCTTCCAGCGATTGATTCACTCTGGTCG
GGAAAAGCGCGGAATGCGCTTTTGTTAGGGCGGTGGTTACTATAGGCAGT
TTGAGTCTGCATCTGTATATGTTGCTGTGCATGTTGTCGAGCGACGTCGA
GCATGAGGGGACACGTGGACGGAAACCCCCCGCGCCACAAGAAAGCGCGC
TGCCGCGGGGACGCTATACCATCGTGAGTCTATGGTTGGTTTAGTGCCTG
CCGGTTCGTCGTCGACATACTTGGGGCCTTGGCTAGGAAGTGATCGACTT
TATGTGTGATGTGCCATGTGCTGGGGGCTGTGTTGTTGGTTATTGTTGGC
TTGTACATGTTGTCGTTGAGAAATTGATCTAGAAGGCGAAGCATCTTTTT
ATTTTTTTTCCGCCGCGTGCACAGGCCGTTGTTGGGCCGCGATAAGACGT
GCTGTTTTTGCAGCGGGAGCGCCACAGATGAGAAACGCTCCGTCCTAACC
TCTGCACTCTTGGTCCTCAGTTCCCCCGGCACATGACTAAAGCAGTAACT
GACGTTTTCCACTTGTTCAGGAACATGTTTGCTTTTGAACGGCTCCGTCT
AGGTTCTTTAAAGAGTTTTTTTTTTTTTTTGCTTCTTGGTTTTCTTTGTT
GCCACATTGCCGCCGAGTGCATTGTAGCACGTTGGTTGAAATACGTACGT
AAACAAGATGTGTGGCATCTATAACGTGAGGCCCACAAAGTCCGACATTT
GATCACTACTGGGAAAGTCAACCAGTAGATGGAGGAGTCATTCGGGTTGA
AGACTGGCCTGTTTATGTAGGTGGTCCGCGAGCGTGTTGCGTACAGTAAC
CGGTATGTTTGGCATGTGTCAAATGTACAGATTGTCGCTGATTTGCGGAA
AGTACACGGAATAAGGATTAGAATTAGCACACGTTTGTTAGTGTGATCAT
GTCTTGAGGCGATCGCATCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig889:13393..16815+

>mRNA_Ecto-sp13_S_contig889.20385.1 ID=mRNA_Ecto-sp13_S_contig889.20385.1|Name=mRNA_Ecto-sp13_S_contig889.20385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig889:13393..16815+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGATCCTCGTGATGAGGAGGCTGGTGGACGATGCTGTGGGGATAG
TGGGTCTGCTTCTGCGAATCACGACGAACCCCGCTTGGCGACGGCGCATG
CCGACCTTCCTTCGACGGCATCAGCGTCGCCAGAAGAAGAAGCGACAATA
CGCGCTGAGCCTGCGGCACCTCCGCCCACCTCAAGAAGAAGACCTGTTGA
GCCCGAGGAGTCTTTGTACAGCATGAAGCACGTCGATGAACAGGCGAAGC
AGGCGGTGGACAACATCTCGACCCTGACGTCGTTCAAGTCGACCATCCTG
GCCCGGACGGCCGTCTACGACACGCCCGAGGGCATCCTCCACTCGCTCAG
CTTCTTCAAGAGGAGGTTCAAGTGGTTCGACTTCGACGAGTCGGACCTGG
AGAAGACCACCACCTACTACTGCTGCGACGAGCGGGGCATGCACAACGTC
CACCTCACGGGCTACCTCATCATGTGCCACAAGATCCGCGGGAAGTACGT
CTTCCGCTCCTGTGTCGCCGAGTTTTACGAGCAGGTGACTTTCGACCAGC
TGGCGTACAAAGTCCTCGCCTCCAGCACGTCCATCGTCGGTGGCATTGCC
GCAAGCGCGCTCACGGGGGCTGCTATGGCGTGGCCCACGGACGTGTTTAC
GTGGGGAACGGGCTCCGTAGTAGGGGGGCTAGCGGGAGCCGTCGTGGGGG
TCGTCGGCGCCGTGTTTGTCAACGTGGACGCGGACTCCAAGGAGAAGCAG
ATCGAGAAGAAGCTCGGGTCCAGCCTGTACAACGCCAGCATGAACAGGAT
CAACAGCCACGGGATCATGGAGGTGCTTCTCCTCCACTACCTCCTGGCCG
ACCAAAAGTACAACATCGAGGGGACCGAGGTCCGCATCACCGGCGTGCAA
GAGCAAGACTTCGCCACGGCCGGGATGGTTGGGGGTACAGCCGGCGGCGG
CGGCGGCGGCGATACAACAACCGCATATCACTGA
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