mRNA_Ecto-sp13_S_contig12454.2037.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI) HSP 1 Score: 507 bits (1306), Expect = 4.560e-168 Identity = 272/296 (91.89%), Postives = 278/296 (93.92%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTARQKSASVESAKMRRQSSSAVMHKGQ-PGGEGGDGVTEGKAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGAL 885
LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIV AAKAANAHDFIKSFP+AYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAE+GIAELGTHSEL+AKNGIYT+LC ++GPG XXX GAEG VARTARQKSASVESAKMRRQSSSAVMHKGQ PGGEGGDG E KAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGAL
Sbjct: 446 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVTAAKAANAHDFIKSFPDAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAEQGIAELGTHSELLAKNGIYTALCTIEGPGAGNGSAAXXXAGDNGAEGVVARTARQKSASVESAKMRRQSSSAVMHKGQQPGGEGGDGAAEDKAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGAL 741
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA) HSP 1 Score: 320 bits (821), Expect = 1.910e-97 Identity = 180/295 (61.02%), Postives = 217/295 (73.56%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTARQKSASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGAL 885
LLLRFYDPTSG + LDG D++SLN+ +YR +IGYVGQEPVLF+G+IRDN+A+GKP ATDEEI AAKAANAH+FIK FP Y T+VG GGLQLSGGQKQR+AIARAIIKDPAILLLDEATSALDSESEKVVQQALD+L + + TT+ IAHRLSTIQ++DRIAVVA +GIAE+GTH+EL A G+Y +LC QG G A G + R +S+S + A+ +SS ++ G G EG DG G K ED P P R+WALNKP+AG++ +GL GAL
Sbjct: 375 LLLRFYDPTSGCIRLDGADIRSLNLNWYRQQIGYVGQEPVLFSGSIRDNIANGKPGATDEEITNAAKAANAHEFIKGFPKGYGTNVGEGGLQLSGGQKQRVAIARAIIKDPAILLLDEATSALDSESEKVVQQALDKLQTLKRRTTITIAHRLSTIQNSDRIAVVANKGIAEIGTHAELTALGGLYAALCRAQGSGATAEESAELERQDSLARGQSLQRMRSQSSSAQMAR----ASSLMLGDGGEG-EGADGGAGGVVK-ED----APRAPMGRLWALNKPDAGFVAIGLGGAL 659
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA) HSP 1 Score: 313 bits (803), Expect = 6.340e-95 Identity = 177/296 (59.80%), Postives = 214/296 (72.30%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTAR-QKSASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEG-KAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGA 882
LLLRFYDPTSG++ LDG D++SLN+ +YR +IGYVGQEPVLFAG+IRDN+A+GKP ATDEEI+ AAKAANAH+FIK FP Y TDVG GGLQLSGGQKQR+AIARAIIKDPAILLLDEATSALDSESEKVVQQALD+LH++ + TT+ IAHRLSTIQ++DRIAV+A +G+AE+GTH+EL A GIY+ LC QG G GA G A A KS S + R SS+V DG +G K P P SR+WALN+P+ ++++GL+GA
Sbjct: 376 LLLRFYDPTSGAIKLDGMDIRSLNLNWYRQQIGYVGQEPVLFAGSIRDNIANGKPGATDEEIINAAKAANAHEFIKGFPKGYRTDVGEGGLQLSGGQKQRVAIARAIIKDPAILLLDEATSALDSESEKVVQQALDKLHELKRRTTITIAHRLSTIQNSDRIAVIANKGVAEIGTHAELTALGGIYSQLCKAQGGG---------TGAAAGATGDDALDAETDKSLRDYSMQRTRSHSSSV-----------DGAVKGGKKXXXXXXXDAPRAPMSRLWALNRPDWMWVVVGLVGA 651
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: A0A6H5L6B5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B5_9PHAE) HSP 1 Score: 310 bits (794), Expect = 1.120e-93 Identity = 184/272 (67.65%), Postives = 186/272 (68.38%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTARQKSASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGEDDEAKYPLPP 816
LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQ FIKSFP+AYATDVGTGGLQLSGGQKQ VVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSEL+AKNGIYTSLCAMQGPGG GAEGAVARTARQKSASVESAKMRRQSSSAVMHKGQPGGEGGDG TE KAKGEDDE L P
Sbjct: 228 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQ------------------------------------FIKSFPSAYATDVGTGGLQLSGGQKQ------------------------------VVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELLAKNGIYTSLCAMQGPGGGNGSAAATAGGDDGAEGAVARTARQKSASVESAKMRRQSSSAVMHKGQPGGEGGDGGTEAKAKGEDDEMAGSLFP 433
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA) HSP 1 Score: 311 bits (796), Expect = 1.990e-93 Identity = 183/334 (54.79%), Postives = 223/334 (66.77%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLL-----------------------------------DEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTARQKSA-SVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGE----DDEAKYPLPPSSRMWALNKPEAGYLILGLIGA 882
LLLRFYDPTSG++ LDG D++SLN+ +YR +IGYVGQEPVLFAG+IRDN+A+GKP ATD+EI+ AAKAANAH+FIK FP Y T+VG GGLQLSGGQKQR+AIARAIIKDPAILLL DEATSALDSESEKVVQQALDRLH++ + TT+ IAHRLSTIQ++DRIAV+A RG+AE+GTHSELMA +GIY LCA Q GA+ A RQ SA + +R SSSA+ G GG+ +G EG AKG+ DD A P P SR+WA+ +P+ ++ +G+ GA
Sbjct: 479 LLLRFYDPTSGAIKLDGMDIRSLNLNWYRQQIGYVGQEPVLFAGSIRDNIANGKPGATDDEIINAAKAANAHEFIKGFPKGYNTEVGEGGLQLSGGQKQRVAIARAIIKDPAILLLEXXXXXXXXXXXXXXXILRVXXXXXXXXXXXXXLSDEATSALDSESEKVVQQALDRLHELKRRTTITIAHRLSTIQNSDRIAVIANRGVAEIGTHSELMALDGIYAQLCAAQS---------------GGADAAQRALRRQSSAEATRQRSLRDNSSSAMAAIG--GGQADEGAGEGGAKGKTGKKDDNADKPKAPLSRLWAMQRPDWPWVAMGIGGA 795
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.350e-91 Identity = 182/305 (59.67%), Postives = 215/305 (70.49%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAV-ARTARQKS---------ASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGAL 885
LLLRFYDPTSG++ LDG D+KSLNV +YR +IGYVGQEPVLFAGTI N+A+GK +T +EI+AAA+AANAH+FIKSFP Y T VG GG QLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQ ALD+LHK TTV IAHRLSTI+ AD+IAV+ ++G+ ELGTHSEL+A NG+Y LC QG E + AR ARQKS AS A +RRQSS+ PG E + GK + +E K P PP RMW+LNK + +L+LG+IGA+
Sbjct: 407 LLLRFYDPTSGTVTLDGTDIKSLNVAWYRQQIGYVGQEPVLFAGTIALNIANGKLGSTQDEIIAAARAANAHEFIKSFPEGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDKLHKDKPRTTVTIAHRLSTIRGADKIAVI-DKGVVELGTHSELLALNGVYHMLCTSQG-----------GKTEEEIEADIQARLARQKSLSGAKVTREASGSDALLRRQSSNV-----NPGQEIDLSASAGKKDAKVEEEKLPKPPRGRMWSLNKGDWPWLVLGVIGAI 694
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI) HSP 1 Score: 300 bits (768), Expect = 1.000e-89 Identity = 179/296 (60.47%), Postives = 212/296 (71.62%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDA-TDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVA-RTARQKSASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGEDDEAKYPLPPSSRMWALNKPEAGYLILGLIGA 882
LLLRFYDPTSGS+ LDG D+KSLNV +YR +IGYVGQEPVLFAGTI N+A+GK A T +EIVAAAKAANAHDFI+SFP+ Y T VG GG QLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQ ALD+LHK TTV IAHRLSTIQ AD+IAV+ ++G+ ELGTHSEL+A NG+Y +LC+ Q G G + A+ RT+ + AS A + S G +G G + K+K E+ E K P P S RMWALNK + +L++G +GA
Sbjct: 437 LLLRFYDPTSGSVSLDGTDIKSLNVAWYRQQIGYVGQEPVLFAGTIGLNIANGKHGAATQDEIVAAAKAANAHDFIESFPDGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDQLHKDKPRTTVTIAHRLSTIQGADKIAVI-DKGVVELGTHSELLALNGVYHTLCSSQTGG--------TTEGLAGGDNAMELRTSNENIASESGAGDVKSGSPKDATPGGAPMDGSSGADKQKSK-EEQEEKLPAPASGRMWALNKGDWPWLLMGFVGA 722
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI) HSP 1 Score: 281 bits (718), Expect = 3.130e-86 Identity = 172/284 (60.56%), Postives = 197/284 (69.37%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCAMQGPGGXXXXXXXXXXXXXGAEGAVARTARQKS---------ASVESAKMRRQSSSAVMHKGQPGGEGGDGVTEGKAKGEDDEAKYPLPPSSR 825
LLLRFYDPTSG++ LDG D+KSLNV +YR +IGYVGQEPVLFAGTI N+A+GK +T +EI+ AAKAANAH+FIKSFP Y T VG GG QLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQ ALD LHK TTV IAHRLSTI+ AD+IAV+ ++G+ ELGTHSEL+A NG+Y LC QG G AR ARQKS AS A +RRQSS+ PG E + GK + +E K P PPS+R
Sbjct: 418 LLLRFYDPTSGTVTLDGTDIKSLNVAWYRQRIGYVGQEPVLFAGTIALNIANGKLGSTQDEIITAAKAANAHEFIKSFPEGYNTGVGEGGFQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQAALDELHKDKPRTTVTIAHRLSTIRGADKIAVI-DKGVVELGTHSELLALNGVYHMLCTSQG--GKTEEEIEADKQ--------ARLARQKSFSGAKVTREASGSDALLRRQSSNF-----NPGQEIDLSASAGKKDAKVEEEKLPKPPSAR 685
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: A0A7S3XS79_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS79_HETAK) HSP 1 Score: 250 bits (639), Expect = 3.280e-79 Identity = 123/191 (64.40%), Postives = 154/191 (80.63%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELMAKNGIYTSLCA 573
L+LRFYDP G++ LDG D++ LN+++YR KIGYVGQEPVLFAGT+R NV G+P ATD E+ AA+AANAH FI++FP Y TDVG G+QLSGGQKQRIAIARA+IK P ILLLDEATSALD+ESE+VVQ+ALDR+ TT+V+AHRL+T+Q+ DRIAV++ + E+G H EL+AK GIY SL +
Sbjct: 34 LVLRFYDPREGAVCLDGQDIRGLNLKWYRSKIGYVGQEPVLFAGTVRTNVRSGRPGATDAEVQQAAEAANAHGFIQAFPQGYETDVGEAGVQLSGGQKQRIAIARALIKAPKILLLDEATSALDNESERVVQEALDRIQAASAFTTLVVAHRLTTVQNCDRIAVISGGQVKEIGPHKELLAKGGIYASLAS 224
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Match: T0PRI0_SAPDV (ATP-binding cassette, subfamily B (MDR/TAP), member 1 (Fragment) n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0PRI0_SAPDV) HSP 1 Score: 247 bits (630), Expect = 1.430e-78 Identity = 130/194 (67.01%), Postives = 154/194 (79.38%), Query Frame = 1
Query: 1 LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVAHGKPDATDEEIVAAAKAANAHDFIKSFPNAYATDVGTGGLQLSGGQKQRIAIARAIIKDPAILLLDEATSALDSESEKVVQQALDRLHKIHKHTTVVIAHRLSTIQDADRIAVVAERGIAELGTHSELM-AKNGIYTSLCAMQ 579
LL RFYDP SG++FLDGHD++SLNVQ R I V QEPVLFAGTI DN+A GKP AT EI AAK ANAHDFI FPN Y T VG G+Q+SGGQKQRIAIARAII+DPA+LLLDEATSALD+ESE++VQ++LDRL K + TTV++AHRLSTI++AD IAVV + + ELGTH EL+ NG+Y +L A Q
Sbjct: 31 LLERFYDPASGAVFLDGHDLRSLNVQSLRSHISIVSQEPVLFAGTIADNIATGKPGATMAEIEDAAKKANAHDFIMRFPNGYETTVGDRGVQVSGGQKQRIAIARAIIRDPAVLLLDEATSALDTESERIVQESLDRLLKQKRRTTVIVAHRLSTIRNADMIAVVNDGKVCELGTHDELVNLPNGLYANLVARQ 224 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12454.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12454.2037.1 >prot_Ecto-sp13_S_contig12454.2037.1 ID=prot_Ecto-sp13_S_contig12454.2037.1|Name=mRNA_Ecto-sp13_S_contig12454.2037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp LLLRFYDPTSGSLFLDGHDVKSLNVQYYRGKIGYVGQEPVLFAGTIRDNVback to top mRNA from alignment at Ecto-sp13_S_contig12454:104..4463+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12454.2037.1 ID=mRNA_Ecto-sp13_S_contig12454.2037.1|Name=mRNA_Ecto-sp13_S_contig12454.2037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12454:104..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12454:104..4463+ >mRNA_Ecto-sp13_S_contig12454.2037.1 ID=mRNA_Ecto-sp13_S_contig12454.2037.1|Name=mRNA_Ecto-sp13_S_contig12454.2037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12454:104..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |