mRNA_Ecto-sp13_S_contig88462.20335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88462.20335.1
Unique NamemRNA_Ecto-sp13_S_contig88462.20335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: D8LRY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.210e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQV+R
Sbjct:  167 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVTR 209          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S3L569_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L569_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.170e-10
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    7 LLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            LL ++S+VC VEIS FSHRFRTVLRTLGA+NQ+STD QV R
Sbjct:  198 LLAVVSIVCVVEISIFSHRFRTVLRTLGAINQVSTDSQVRR 238          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A448Z6T5_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.570e-10
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            S LL  +S+VC VEIS FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct:  209 SILLATVSIVCVVEISIFSHRFRTVLKTLGAINQVSTDSQVKR 251          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A835ZB76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB76_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.070e-9
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            S  + +L+LVCS+EIS  SHRFRTVL+TLGAVNQ+ST+ QV R
Sbjct:  140 SFFIALLALVCSIEISMLSHRFRTVLQTLGAVNQVSTETQVKR 182          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2YGE5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGE5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.510e-9
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            + LL ++SLVC  EI+ FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct:  191 AVLLAVVSLVCVCEITIFSHRFRTVLQTLGAINQVSTDSQVRR 233          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S3QAU3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAU3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-8
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    7 LLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            LL  +S++C VEIS FSH+FRTVL+TLGA+NQ+ST+ QV R
Sbjct:   39 LLSTVSIICVVEISIFSHKFRTVLQTLGAINQVSTESQVKR 79          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2LIW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.690e-8
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   10 LCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            L ++SLVC  EI+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct:  188 LSLVSLVCVCEITIFSHRFRTVLKTLGAINQVSTESQVKR 227          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2R9F3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R9F3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.950e-8
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            + LL  +S++C  EI+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct:  187 AVLLATVSIICVCEITIFSHRFRTVLKTLGAINQVSTESQVKR 229          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: B7GBN5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBN5_PHATC)

HSP 1 Score: 56.2 bits (134), Expect = 5.160e-8
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            + LL ++S+VC   I+ FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct:  227 AVLLAIVSVVCVCRITFFSHRFRTVLKTLGAINQVSTDSQVRR 269          
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S1D2M5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2M5_CYCTE)

HSP 1 Score: 55.8 bits (133), Expect = 7.000e-8
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
            + +L ++S+VC  +I+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct:  203 AVMLAVVSIVCVTQITIFSHRFRTVLKTLGAINQVSTESQVKR 245          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LRY6_ECTSI3.210e-1797.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3L569_9STRA3.170e-1075.61Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448Z6T5_9STRA4.570e-1072.09Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A835ZB76_9STRA4.070e-967.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2YGE5_9STRA5.510e-967.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3QAU3_9STRA1.300e-865.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LIW5_9STRA3.690e-867.50Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2R9F3_9STRA4.950e-860.47Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B7GBN5_PHATC5.160e-862.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1D2M5_CYCTE7.000e-858.14Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88462contigEcto-sp13_S_contig88462:86..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D8LRY6
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28MVM@1,2QUDV@2759
Cds size117
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.6586132-CDS-Ecto-sp13_S_contig88462:85..2021681464156.6586132-CDS-Ecto-sp13_S_contig88462:85..202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88462 86..202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.6709833-UTR-Ecto-sp13_S_contig88462:202..2171681464156.6709833-UTR-Ecto-sp13_S_contig88462:202..217Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig88462 203..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88462.20335.1prot_Ecto-sp13_S_contig88462.20335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88462 86..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88462.20335.1

>prot_Ecto-sp13_S_contig88462.20335.1 ID=prot_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR*
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mRNA from alignment at Ecto-sp13_S_contig88462:86..217-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88462.20335.1 ID=mRNA_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88462:86..217- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGCTCTGCTGTGCATGTTGTCGTTGGTGTGCAGCGTGGAGATCTCCCG GTTCTCGCACCGCTTTCGAACGGTCCTGAGAACGCTCGGCGCCGTCAACC AGATATCGACGGATGGCCAAGTGAGTAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88462:86..217-

>mRNA_Ecto-sp13_S_contig88462.20335.1 ID=mRNA_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88462:86..217- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGTCGTTGGTGTGCAGCGTGGAGATCTCCCGGTTCTCGCACCGCTT
TCGAACGGTCCTGAGAACGCTCGGCGCCGTCAACCAGATATCGACGGATG
GCCAAGTGAGTAGATGA
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