mRNA_Ecto-sp13_S_contig88462.20335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: D8LRY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY6_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 3.210e-17 Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQV+R
Sbjct: 167 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVTR 209
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S3L569_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L569_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.170e-10 Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query: 7 LLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
LL ++S+VC VEIS FSHRFRTVLRTLGA+NQ+STD QV R
Sbjct: 198 LLAVVSIVCVVEISIFSHRFRTVLRTLGAINQVSTDSQVRR 238
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A448Z6T5_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6T5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.570e-10 Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
S LL +S+VC VEIS FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct: 209 SILLATVSIVCVVEISIFSHRFRTVLKTLGAINQVSTDSQVKR 251
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A835ZB76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB76_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 4.070e-9 Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
S + +L+LVCS+EIS SHRFRTVL+TLGAVNQ+ST+ QV R
Sbjct: 140 SFFIALLALVCSIEISMLSHRFRTVLQTLGAVNQVSTETQVKR 182
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2YGE5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGE5_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 5.510e-9 Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
+ LL ++SLVC EI+ FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct: 191 AVLLAVVSLVCVCEITIFSHRFRTVLQTLGAINQVSTDSQVRR 233
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S3QAU3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAU3_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.300e-8 Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 7 LLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
LL +S++C VEIS FSH+FRTVL+TLGA+NQ+ST+ QV R
Sbjct: 39 LLSTVSIICVVEISIFSHKFRTVLQTLGAINQVSTESQVKR 79
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2LIW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW5_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.690e-8 Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 10 LCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
L ++SLVC EI+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct: 188 LSLVSLVCVCEITIFSHRFRTVLKTLGAINQVSTESQVKR 227
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S2R9F3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R9F3_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.950e-8 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
+ LL +S++C EI+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct: 187 AVLLATVSIICVCEITIFSHRFRTVLKTLGAINQVSTESQVKR 229
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: B7GBN5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBN5_PHATC) HSP 1 Score: 56.2 bits (134), Expect = 5.160e-8 Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
+ LL ++S+VC I+ FSHRFRTVL+TLGA+NQ+STD QV R
Sbjct: 227 AVLLAIVSVVCVCRITFFSHRFRTVLKTLGAINQVSTDSQVRR 269
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Match: A0A7S1D2M5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2M5_CYCTE) HSP 1 Score: 55.8 bits (133), Expect = 7.000e-8 Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 SALLCMLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR 129
+ +L ++S+VC +I+ FSHRFRTVL+TLGA+NQ+ST+ QV R
Sbjct: 203 AVMLAVVSIVCVTQITIFSHRFRTVLKTLGAINQVSTESQVKR 245 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88462.20335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig88462.20335.1 >prot_Ecto-sp13_S_contig88462.20335.1 ID=prot_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp MLSLVCSVEISRFSHRFRTVLRTLGAVNQISTDGQVSR*back to top mRNA from alignment at Ecto-sp13_S_contig88462:86..217- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig88462.20335.1 ID=mRNA_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88462:86..217- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88462:86..217- >mRNA_Ecto-sp13_S_contig88462.20335.1 ID=mRNA_Ecto-sp13_S_contig88462.20335.1|Name=mRNA_Ecto-sp13_S_contig88462.20335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88462:86..217- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |