prot_Ecto-sp13_S_contig88348.20323.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig88348.20323.1
Unique Nameprot_Ecto-sp13_S_contig88348.20323.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length60
Homology
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.640e-32
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGPELT
Sbjct:  143 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPELT 202          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.300e-29
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 59
            GNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP+L
Sbjct:   48 GNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQL 106          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.470e-26
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ PEL+
Sbjct:  112 GNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELS 171          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.220e-25
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 59
            GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GPEL
Sbjct:   50 GNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPEL 108          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.840e-25
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  115 GNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 174          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 100 bits (249), Expect = 1.060e-24
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 59
            GNV++ EIDGPVVRL+LEGACG+CPSST TMKMGLERRL +RIPEI EV+Q++P GP+L
Sbjct:  111 GNVKIQEIDGPVVRLQLEGACGTCPSSTQTMKMGLERRLRERIPEIQEVIQAMPQGPDL 169          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A1Z5JRH1_FISSO (NifU domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRH1_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 2.020e-24
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER L +RIPEI EVVQ +P GPELT
Sbjct:   91 GNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELT 150          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.330e-24
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  112 GNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 171          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.020e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL + IPEISEVVQ++P+ P LT
Sbjct:  112 GNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEAIPEISEVVQAMPDSPPLT 171          
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-24
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 60
            GNV + EIDGPVVRLEL+G CG+CPSST TMKMGLER+L++RIPEI EVVQ++P+ P+LT
Sbjct:   95 GNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDLT 154          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE2.640e-3298.33NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA1.300e-2988.14NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA2.470e-2680.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1H4I0_9STRA5.220e-2577.97Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A4D9D2Y8_9STRA8.840e-2578.33NifU domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S1D6Z8_CYCTE1.060e-2476.27Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5JRH1_FISSO2.020e-2478.33NifU domain-containing protein n=2 Tax=Fistulifera... [more]
W7TNI1_9STRA2.330e-2476.67Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S2C848_9STRA3.020e-2478.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K0SKZ0_THAOC4.200e-2473.33NifU domain-containing protein n=1 Tax=Thalassiosi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 1..56
e-value: 3.7E-20
score: 73.5
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 1..53
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 1..50
e-value: 1.8E-17
score: 63.2
NoneNo IPR availablePANTHERPTHR11178:SF39NIFU-LIKE PROTEIN 2, CHLOROPLASTICcoord: 1..51
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 1..51
NoneNo IPR availablePRODOMPD002830coord: 1..51
e-value: 2.0E-16
score: 203.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88348contigEcto-sp13_S_contig88348:52..231 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88348.20323.1mRNA_Ecto-sp13_S_contig88348.20323.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig88348 52..231 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig88348.20323.1 ID=prot_Ecto-sp13_S_contig88348.20323.1|Name=mRNA_Ecto-sp13_S_contig88348.20323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVV
QSIPNGPELT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR001075NIF_FeS_clus_asmbl_NifU_C