mRNA_Ecto-sp13_S_contig88348.20323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88348.20323.1
Unique NamemRNA_Ecto-sp13_S_contig88348.20323.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.640e-32
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGPELT
Sbjct:  143 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPELT 202
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.300e-29
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 177
            GNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP+L
Sbjct:   48 GNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQL 106
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.470e-26
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ PEL+
Sbjct:  112 GNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELS 171
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.220e-25
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 177
            GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GPEL
Sbjct:   50 GNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPEL 108
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.840e-25
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  115 GNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 174
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 100 bits (249), Expect = 1.060e-24
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPEL 177
            GNV++ EIDGPVVRL+LEGACG+CPSST TMKMGLERRL +RIPEI EV+Q++P GP+L
Sbjct:  111 GNVKIQEIDGPVVRLQLEGACGTCPSSTQTMKMGLERRLRERIPEIQEVIQAMPQGPDL 169
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A1Z5JRH1_FISSO (NifU domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JRH1_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 2.020e-24
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER L +RIPEI EVVQ +P GPELT
Sbjct:   91 GNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELT 150
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.330e-24
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  112 GNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 171
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: A0A7S2C848_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C848_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.020e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL + IPEISEVVQ++P+ P LT
Sbjct:  112 GNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEAIPEISEVVQAMPDSPPLT 171
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BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-24
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELT 180
            GNV + EIDGPVVRLEL+G CG+CPSST TMKMGLER+L++RIPEI EVVQ++P+ P+LT
Sbjct:   95 GNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDLT 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88348.20323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE2.640e-3298.33NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA1.300e-2988.14NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA2.470e-2680.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1H4I0_9STRA5.220e-2577.97Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A4D9D2Y8_9STRA8.840e-2578.33NifU domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S1D6Z8_CYCTE1.060e-2476.27Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5JRH1_FISSO2.020e-2478.33NifU domain-containing protein n=2 Tax=Fistulifera... [more]
W7TNI1_9STRA2.330e-2476.67Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S2C848_9STRA3.020e-2478.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K0SKZ0_THAOC4.200e-2473.33NifU domain-containing protein n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88348contigEcto-sp13_S_contig88348:52..231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.9
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog2880.D7FRC2
Preferred nameNFU3
Model size180
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Exons1
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
EC6.1.1.6
Cds size180
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.6127172-CDS-Ecto-sp13_S_contig88348:51..2311681464155.6127172-CDS-Ecto-sp13_S_contig88348:51..231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88348 52..231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88348.20323.1prot_Ecto-sp13_S_contig88348.20323.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88348 52..231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88348.20323.1

>prot_Ecto-sp13_S_contig88348.20323.1 ID=prot_Ecto-sp13_S_contig88348.20323.1|Name=mRNA_Ecto-sp13_S_contig88348.20323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVV
QSIPNGPELT
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mRNA from alignment at Ecto-sp13_S_contig88348:52..231-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88348.20323.1 ID=mRNA_Ecto-sp13_S_contig88348.20323.1|Name=mRNA_Ecto-sp13_S_contig88348.20323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88348:52..231- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAACGTGCGGGTGGTGGAAATAGACGGTCCGGTGGTGCGGCTGGAGTT
GGAGGGCGCCTGCGGCAGCTGCCCTTCCAGCACGATGACGATGAAGATGG
GTCTGGAGAGGCGATTAGTGCAACGGATCCCGGAGATCAGCGAGGTCGTA
CAGTCTATCCCCAATGGCCCGGAGCTGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88348:52..231-

>mRNA_Ecto-sp13_S_contig88348.20323.1 ID=mRNA_Ecto-sp13_S_contig88348.20323.1|Name=mRNA_Ecto-sp13_S_contig88348.20323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88348:52..231- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAACGTGCGGGTGGTGGAAATAGACGGTCCGGTGGTGCGGCTGGAGTT
GGAGGGCGCCTGCGGCAGCTGCCCTTCCAGCACGATGACGATGAAGATGG
GTCTGGAGAGGCGATTAGTGCAACGGATCCCGGAGATCAGCGAGGTCGTA
CAGTCTATCCCCAATGGCCCGGAGCTGACG
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