prot_Ecto-sp13_S_contig8819.20306.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8819.20306.1
Unique Nameprot_Ecto-sp13_S_contig8819.20306.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length189
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8819.20306.1 vs. uniprot
Match: D7FQV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV5_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.770e-107
Identity = 160/188 (85.11%), Postives = 167/188 (88.83%), Query Frame = 0 
Query:    1 MGGVPEGGPVVYASDLFGSLANETYVWAIGNYNSTQDVVDPRLCYDEDGADASTTHPAEVAAWLCDGXXXXXXXXXXXXXATGFTVWCGCATPAPSTAGNDGLRDFTLSPAPVALAAEPVDTSEDDGMPTPVIIVTAFAVFVVVAIILAIAFEGLRKGLWMCMSCKRESTSKDIGVSFSGSSSRGQAA 188
            MGGV E GPVV ASDLFG LANETYVWAIGNYN TQDVVDPRLCYDEDGADA+TTHPAEV+AWLCDG             ATGFTVWCGCATPAP+TAGNDGLRDFTLSPAPVALAAEPV TSEDDGMPTPVIIVTAFAVFVVVAI+LAIAFEGLRKGLWMC+SCKRESTS++IGVS S SSSRGQAA
Sbjct:    1 MGGVLEEGPVVCASDLFGPLANETYVWAIGNYNFTQDVVDPRLCYDEDGADANTTHPAEVSAWLCDGRGSTTTTAAEDDDATGFTVWCGCATPAPTTAGNDGLRDFTLSPAPVALAAEPVHTSEDDGMPTPVIIVTAFAVFVVVAIVLAIAFEGLRKGLWMCISCKRESTSENIGVSSSVSSSRGQAA 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8819.20306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQV5_ECTSI1.770e-10785.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..131
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..188
NoneNo IPR availableTMHMMTMhelixcoord: 130..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8819contigEcto-sp13_S_contig8819:4113..6147 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8819.20306.1mRNA_Ecto-sp13_S_contig8819.20306.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8819 4113..6147 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8819.20306.1 ID=prot_Ecto-sp13_S_contig8819.20306.1|Name=mRNA_Ecto-sp13_S_contig8819.20306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MGGVPEGGPVVYASDLFGSLANETYVWAIGNYNSTQDVVDPRLCYDEDGA
DASTTHPAEVAAWLCDGGGSTTTTAAEDDDATGFTVWCGCATPAPSTAGN
DGLRDFTLSPAPVALAAEPVDTSEDDGMPTPVIIVTAFAVFVVVAIILAI
AFEGLRKGLWMCMSCKRESTSKDIGVSFSGSSSRGQAA*
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