mRNA_Ecto-sp13_S_contig8819.20306.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8819.20306.1
Unique NamemRNA_Ecto-sp13_S_contig8819.20306.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8819.20306.1 vs. uniprot
Match: D7FQV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV5_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.770e-107
Identity = 160/188 (85.11%), Postives = 167/188 (88.83%), Query Frame = 1 
Query:    1 MGGVPEGGPVVYASDLFGSLANETYVWAIGNYNSTQDVVDPRLCYDEDGADASTTHPAEVAAWLCDGXXXXXXXXXXXXXATGFTVWCGCATPAPSTAGNDGLRDFTLSPAPVALAAEPVDTSEDDGMPTPVIIVTAFAVFVVVAIILAIAFEGLRKGLWMCMSCKRESTSKDIGVSFSGSSSRGQAA 564
            MGGV E GPVV ASDLFG LANETYVWAIGNYN TQDVVDPRLCYDEDGADA+TTHPAEV+AWLCDG             ATGFTVWCGCATPAP+TAGNDGLRDFTLSPAPVALAAEPV TSEDDGMPTPVIIVTAFAVFVVVAI+LAIAFEGLRKGLWMC+SCKRESTS++IGVS S SSSRGQAA
Sbjct:    1 MGGVLEEGPVVCASDLFGPLANETYVWAIGNYNFTQDVVDPRLCYDEDGADANTTHPAEVSAWLCDGRGSTTTTAAEDDDATGFTVWCGCATPAPTTAGNDGLRDFTLSPAPVALAAEPVHTSEDDGMPTPVIIVTAFAVFVVVAIVLAIAFEGLRKGLWMCISCKRESTSENIGVSSSVSSSRGQAA 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8819.20306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQV5_ECTSI1.770e-10785.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8819contigEcto-sp13_S_contig8819:4113..6147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_003030.1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.4261007-CDS-Ecto-sp13_S_contig8819:4112..41811681464154.4261007-CDS-Ecto-sp13_S_contig8819:4112..4181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8819 4113..4181 +
1681464154.4382915-CDS-Ecto-sp13_S_contig8819:4513..48261681464154.4382915-CDS-Ecto-sp13_S_contig8819:4513..4826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8819 4514..4826 +
1681464154.4479787-CDS-Ecto-sp13_S_contig8819:5486..55751681464154.4479787-CDS-Ecto-sp13_S_contig8819:5486..5575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8819 5487..5575 +
1681464154.4591436-CDS-Ecto-sp13_S_contig8819:6051..61471681464154.4591436-CDS-Ecto-sp13_S_contig8819:6051..6147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8819 6052..6147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8819.20306.1prot_Ecto-sp13_S_contig8819.20306.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8819 4113..6147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8819.20306.1

>prot_Ecto-sp13_S_contig8819.20306.1 ID=prot_Ecto-sp13_S_contig8819.20306.1|Name=mRNA_Ecto-sp13_S_contig8819.20306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MGGVPEGGPVVYASDLFGSLANETYVWAIGNYNSTQDVVDPRLCYDEDGA
DASTTHPAEVAAWLCDGGGSTTTTAAEDDDATGFTVWCGCATPAPSTAGN
DGLRDFTLSPAPVALAAEPVDTSEDDGMPTPVIIVTAFAVFVVVAIILAI
AFEGLRKGLWMCMSCKRESTSKDIGVSFSGSSSRGQAA*
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mRNA from alignment at Ecto-sp13_S_contig8819:4113..6147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8819.20306.1 ID=mRNA_Ecto-sp13_S_contig8819.20306.1|Name=mRNA_Ecto-sp13_S_contig8819.20306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8819:4113..6147+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGGGTCCCCGAGGGCGGGCCGGTGGTGTACGCCTCCGATCTGTT
CGGCTCGTTGGCCAACGAGGTGAAAAGCGAACGAGTGGCGCCTTTGACTT
GTTGTTATCGTCGGTCCAGACCGATTTACTTCTTGCCGTTGCCCCCCCGT
CTAACGCCGTCTAGACCCGAAACAAAACCACGGCGGTGTGTGTTGGAGCT
ATTGCTTTCTGCGGTGAGAACAATGGCTGCTGCTGTGCTAAGCGTAGCCC
TTGAACGACACACCTCGCCAACGAAGACGTCAAAAAGATGTAGCAATGCG
GCTAGAGGAGATACGGCGAACGCGGTATGTCTCTCCATTGTCTCTCACCA
AATACCGAGCCACCGTCGCCGCCGCCACCGCCCGTCGCCTGTTTTTTGAA
GACCTACGTCTGGGCGATCGGCAACTACAACTCCACCCAGGACGTCGTAG
ACCCCCGCCTCTGCTACGATGAGGACGGCGCCGACGCCAGCACCACCCAC
CCCGCCGAAGTCGCCGCCTGGCTGTGCGACGGCGGCGGCAGCACAACAAC
AACAGCGGCTGAGGACGACGACGCCACGGGATTCACGGTCTGGTGCGGCT
GCGCGACTCCCGCCCCCTCCACGGCCGGCAACGACGGCCTTCGCGACTTC
ACATTGTCTCCGGCCCCCGTCGCCCTGGCGGCGGAGCCAGTAGACACCAG
CGAAGACGACGGAAGTAAGGCTCAAGTCGCTTGTTTTTCGGAACATTGTT
GGTTCCTGGCTTTTTCATGATTCCTGGTAGAACTTTCGTCGGTGCTTTCC
GCCTGTACCCCTAGGCCGTCGAGGTGTTCAGTCACTTTTCTTGGCCAAAG
GGAGGTCGGCCAGTGGCGGTCCTGAAGCCAAGCCTGCTCAAGAATTTTAC
GGATACGTGCTACCTTCACGCTCAATTTTGCTTGAGAACAGTGACCAAGA
ACGTAGACATATTTTTGAAGAAGCGGGAAAGTGCTTCTGCAGTGCGTTAT
CACCATTACATGTGTCGGATATCTGATGCGAATGTGCGGCATCAGCATCC
TTCTGAGCAGAAACATACGACAACCAGAAGAGAAGATAGATGTGACGTTG
TGAAAGCAGTGTGATCCCCTCGTGACAGACAGGCAACCTAAAATCGGAGG
GAACGAAGCTTGTTTCGTGAAAGACTCCGGCGGCGGCGCCAGTGAAATGT
GCGGAGGAAAGCGCTTCCGAAATCATACCACGTATGTGTTCAGTCGATCG
ACAGCCTGCTGCTTGTATTTCTTTTTGCATTCCTTCGTTCGAGGCGCACA
ACTCCTGTCTCTTCCGTTGTTTGTTGTCACGCTTTGCCGCGTTTATTGCA
CCCCCTAAAAAAACGCCTCCATAGTGCCGACACCGGTCATCATCGTCACC
GCCTTCGCCGTGTTTGTCGTCGTGGCCATAATACTGGCGATAGCGTTCGA
GGGCTTGCGTAAGGTGAGTTGTGCAAAACTCAGAAGGTAGATTAGAAGCG
CTCTAACCAAGAAGGCCGGTCGAAGAAAGCGCGCATTCACGTTGTTTGAC
TTAGCACTCATGCGGTCCATCAAGAACTCCGTGCTTAATACAATTGGATG
TGCGCGACAATCTCCAGACGGAATCCTTCAGAAGTGGAGTGCTGTTCGTG
TTGCGATTCGTCGAACTTGAAGAGGCGGCTGTATTCAGATGCGAGAATCT
CCACATGATAAACTCTTGACTCTGAGCGATTATTTCCGTGGAAGGGCCTG
AGAGTATACATTGAAACCGGACCGTGACGTGGTACGTAATATTTGCAGGC
CTGTATTTCACACGTAACAGACTAAGGGAGAAGGGGGCTGCAAGAGACAT
GTGTCTTGTTTGTCCTTGAAGAACGGGACCACCCGCGGGACATGGACCCA
CACCGTCCCTCTCCACGGCGACACGCACACGGCCAACAGGGGCTCTGGAT
GTGCATGAGCTGCAAGCGAGAGTCGACGTCAAAGGACATCGGAGTATCCT
TTTCCGGCTCGTCTTCGCGTGGCCAGGCGGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8819:4113..6147+

>mRNA_Ecto-sp13_S_contig8819.20306.1 ID=mRNA_Ecto-sp13_S_contig8819.20306.1|Name=mRNA_Ecto-sp13_S_contig8819.20306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8819:4113..6147+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGGGTCCCCGAGGGCGGGCCGGTGGTGTACGCCTCCGATCTGTT
CGGCTCGTTGGCCAACGAGACCTACGTCTGGGCGATCGGCAACTACAACT
CCACCCAGGACGTCGTAGACCCCCGCCTCTGCTACGATGAGGACGGCGCC
GACGCCAGCACCACCCACCCCGCCGAAGTCGCCGCCTGGCTGTGCGACGG
CGGCGGCAGCACAACAACAACAGCGGCTGAGGACGACGACGCCACGGGAT
TCACGGTCTGGTGCGGCTGCGCGACTCCCGCCCCCTCCACGGCCGGCAAC
GACGGCCTTCGCGACTTCACATTGTCTCCGGCCCCCGTCGCCCTGGCGGC
GGAGCCAGTAGACACCAGCGAAGACGACGGAATGCCGACACCGGTCATCA
TCGTCACCGCCTTCGCCGTGTTTGTCGTCGTGGCCATAATACTGGCGATA
GCGTTCGAGGGCTTGCGTAAGGGGCTCTGGATGTGCATGAGCTGCAAGCG
AGAGTCGACGTCAAAGGACATCGGAGTATCCTTTTCCGGCTCGTCTTCGC
GTGGCCAGGCGGCGTAG
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