prot_Ecto-sp13_S_contig8810.20297.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8810.20297.1
Unique Nameprot_Ecto-sp13_S_contig8810.20297.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length128
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 6.320e-73
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0 
Query:    1 MALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI 127
            MALKDFEAALVLFRRSDSVSGEHHVT HNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI
Sbjct:  767 MALKDFEAALVLFRRSDSVSGEHHVTCHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI 893
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: D7FPV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.670e-8
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0 
Query:    3 LKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSV 76
            ++++E AL  +R S    G+HHVT HNMG+ Y+ +G L +AK  FE +L+++  YE +  W   V + L  P V
Sbjct:  587 IREYENALGFYRDSSESVGQHHVTFHNMGLCYYSMGDLHQAKINFELALDMNANYEKAKSWQRKVHQELNCPEV 660
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: UPI000712027D (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000712027D)

HSP 1 Score: 56.6 bits (135), Expect = 9.020e-7
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0 
Query:    1 MALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDS 60
            MAL  ++ A  LF RS S+ GEHH++  N G+    L  + EAK CF R+LELD ++ED+
Sbjct:  350 MALGHYKEASTLFLRSSSLIGEHHISWFNRGVCEMRLRHIAEAKYCFYRTLELDNSFEDA 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJM6_ECTSI6.320e-7399.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FPV2_ECTSI1.670e-839.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000712027D9.020e-746.67hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..127
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 24..57
e-value: 1.1E-4
score: 31.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 24..57
score: 9.499
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 29..57
e-value: 4.1E-8
score: 32.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..77
e-value: 3.3E-10
score: 41.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..69
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..57
score: 13.269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8810contigEcto-sp13_S_contig8810:2080..3670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8810.20297.1mRNA_Ecto-sp13_S_contig8810.20297.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8810 1205..5845 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8810.20297.1 ID=prot_Ecto-sp13_S_contig8810.20297.1|Name=mRNA_Ecto-sp13_S_contig8810.20297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERS
LELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATP
SGGSAASSSSGRTPVSQLEGNLNTLSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001440TPR_1
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom