mRNA_Ecto-sp13_S_contig8810.20297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8810.20297.1
Unique NamemRNA_Ecto-sp13_S_contig8810.20297.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 1.420e-98
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 3 
Query:  216 QVSSQELSPSVWEDLKRDTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI 725
            QVSSQELSPSVWEDLK+DTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVT HNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI
Sbjct:  724 QVSSQELSPSVWEDLKKDTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVTCHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATPSGGSAASSSSGRTPVSQLEGNLNTLSI 893
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: A0A835YJE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.890e-21
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 3 
Query:  222 SSQELSPSVWEDLKRDTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVG 617
            S+ ELSPS W DL+ D + +A + Y LQ  KDV+FEA RLLMA+KDF+AAL LF  S +  G+H  T  NMGMS F  G    A++ F + + ++ +YED ++WL H +R ++      PV G+   +   G
Sbjct:  488 SAVELSPSAWADLREDVSQVAGNNYHLQAAKDVSFEAGRLLMAMKDFKAALQLFAHSKATCGDHPATLLNMGMSSFCSGDYLLARDYFRQCVAINPSYEDGLQWLAHAERVISS-GAGGPVTGTSTDVADAG 618
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: D7FPV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV2_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.730e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:  252 EDLKRDTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDSIRWLEHVQRSLAPPSV 572
            +DL R    +  + Y L + KDV FE  R    ++++E AL  +R S    G+HHVT HNMG+ Y+ +G L +AK  FE +L+++  YE +  W   V + L  P V
Sbjct:  554 KDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYENALGFYRDSSESVGQHHVTFHNMGLCYYSMGDLHQAKINFELALDMNANYEKAKSWQRKVHQELNCPEV 660
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BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Match: UPI000712027D (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000712027D)

HSP 1 Score: 75.1 bits (183), Expect = 1.260e-10
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 3 
Query:  252 EDLKRDTTAIAQHCYPLQQGKDVNFEAARLLMALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERSLELDETYEDS 524
            EDL    T +    +PL  G+D  F+ AR  MAL  ++ A  LF RS S+ GEHH++  N G+    L  + EAK CF R+LELD ++ED+
Sbjct:  319 EDLSIQLTQLETQVFPLYAGRDPCFDLARFHMALGHYKEASTLFLRSSSLIGEHHISWFNRGVCEMRLRHIAEAKYCFYRTLELDNSFEDA 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8810.20297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJM6_ECTSI1.420e-9898.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJE5_9STRA2.890e-2143.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPV2_ECTSI1.730e-1137.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000712027D1.260e-1042.86hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8810contigEcto-sp13_S_contig8810:1205..5845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score244.6
Seed ortholog evalue2.5e-62
Seed eggNOG ortholog2880.D7FJM6
Model size1603
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs28JR9@1,2QS4P@2759
Cds size384
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8810.20297.1prot_Ecto-sp13_S_contig8810.20297.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8810 2080..3670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.8878622-UTR-Ecto-sp13_S_contig8810:1204..20791681464153.8878622-UTR-Ecto-sp13_S_contig8810:1204..2079Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8810 1205..2079 -
1681464153.926516-UTR-Ecto-sp13_S_contig8810:3670..37061681464153.926516-UTR-Ecto-sp13_S_contig8810:3670..3706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8810 3671..3706 -
1681464153.9359496-UTR-Ecto-sp13_S_contig8810:5537..58451681464153.9359496-UTR-Ecto-sp13_S_contig8810:5537..5845Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8810 5538..5845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.8972476-CDS-Ecto-sp13_S_contig8810:2079..22981681464153.8972476-CDS-Ecto-sp13_S_contig8810:2079..2298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8810 2080..2298 -
1681464153.9070153-CDS-Ecto-sp13_S_contig8810:2846..29581681464153.9070153-CDS-Ecto-sp13_S_contig8810:2846..2958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8810 2847..2958 -
1681464153.9166644-CDS-Ecto-sp13_S_contig8810:3617..36701681464153.9166644-CDS-Ecto-sp13_S_contig8810:3617..3670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8810 3618..3670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8810.20297.1

>prot_Ecto-sp13_S_contig8810.20297.1 ID=prot_Ecto-sp13_S_contig8810.20297.1|Name=mRNA_Ecto-sp13_S_contig8810.20297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MALKDFEAALVLFRRSDSVSGEHHVTSHNMGMSYFYLGRLREAKECFERS
LELDETYEDSIRWLEHVQRSLAPPSVATPVAGSGARLGSVGTEPRDPATP
SGGSAASSSSGRTPVSQLEGNLNTLSI*
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mRNA from alignment at Ecto-sp13_S_contig8810:1205..5845-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8810.20297.1 ID=mRNA_Ecto-sp13_S_contig8810.20297.1|Name=mRNA_Ecto-sp13_S_contig8810.20297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8810:1205..5845- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGATTGGCGCTGGGGTACGCCGTGGATGATGGAAAGTCTCAACACCAA
TCTTGCTGTTCCCCGTCCCTCTCCATATATCGTCAGGAACTGAATCATTG
GCGCAACGTTGGACGTCTCGTTGGTGCTGAGGCACGAGGGCGTCAGCCGG
GTTGGATTTCCCTTTGATTTCTCTCAGTCTTTTCTCTGACTTTGGGTCCA
TGTGCTCGAATTTTGCAGGTCTCGAGCCAGGAGCTTTCGCCTTCGGTCTG
GGAAGACCTCAAGAGGGACACAACGGCCATTGCCCAACACTGCTACCCCT
TGCAGCAGGTGAATATATCTCTTTCGTCGTAGGAGTCGCTTGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTCATCGTCT
CGAAAACAGGGGCTGCCTCACTGAAACTAAGACCCTTGTCAGTTGTACGT
GCTCCTCTGCGGCTTGAGAAGGCACTCTTGTGTGAATCGTTTCCTTTTGC
TCTCCAGGACGATCATCGAAATGTTCACTGCATAAAGCAATGCTTCCACG
CCTACATATATGTGACCGAAGAATAAATGGCGTGACGTACAGAAACAAAG
AGGTTGTTTGTTACAGGTCGTTTTTTGTGTTTGTCAGAAGAAAACGTGTT
ATTATCTGATTTCGGACGAACTGCCGTTTCTTACAGAATCAGAAATGACA
TATTTCCGGCAGAAAGTGTTTTCAAGCGGTCATGTGTTCGGAAATTATGA
TAATTTTTTATTAGATGGCGCGTTTGTTTGTTGCTTTGGGATATGCACAC
CACACGGACAAAGCCATCGATTGCGCAGCAAGTACACACATAGAATCTCC
CCAGCACCTTGACCGCGCAACAAACTGTTGGTATCGAGCTCATCAAGGGC
TCCGAGCAACCTTTGAAGCACAGTGCCGCCATCCAGCAATTGATAGGTGG
TTGCCGCGAGGCCAGGTGCGCTCAAAAGCAGGAATGTTGGCCAGCTGGCA
CATACCGCTTGTTGCTCAGACCCACACAGACACGCAGCATCATCCCGACA
CATACACACACAACGGTGAACAAAAATCTTCGGTTCGCTAGATCACCCCG
CCTGTACAAACTTGCGAGGATGTGACCTCCATCAATTGCTCTCTGTCGGA
GGGGCTTTGCCATTGCCATTGGCCCGGTCAGTGGAGAGGGATGGCTTAAA
CGCCACCGGCGACACGGCAAGAATCTGAACAGCAGTGATGAGGCATGGCA
TTGCTCGATTAGCAGTCAGTCGACCCTCCCCAACTTCGTTTCTCAGCCTG
CGAGCACGTCACGGTCTCTGACAACCACCCACAAGAAGCACCATACACAC
ACCTAAAGCCGGGTGGCCGAATTGTTTCTGTTGGTGTTCAGTGAGGAGAG
GTCGCTACGAAACCGAACCTGTGACGGCGCAAAAAACTGTAAGAATGGTA
TGCGTTTGAGCGGGGAGTCTTTTACGAACAGCAGCCGAGACCCTCTCGCC
AACGATGATTCTCCCAGCGCCTCACGGGCTGTAATACCCACCCCGCAAGA
GGCACCACGCGCACAGCTACGGGCGTTTCAGCCAGTGCACAGAGATCCCC
GAAAAACTAAACCGACCGTTGATGAGATGAAGGGCTGTAGCAAGCGGAAT
TCCAAATGGCCGCGTCTTTGGCCAGCAGTGCAAAAGGAAATCGATTTGTT
GTATTTGTTAGGAGCGTCTTGCTTGACAGACAGGATGTTCCTTTATTTTT
TCCAGAAACTTCACTTTTTTTACTGAGAAAAAACGACCCGTAAGAAATAG
CGGAAACGATTGCATAATAAATCATCATCTACGGCCCCCTTCAATGAGAA
ACGTTTGGGCACTTCGTCGTCCTCGTCGCAGAAGGTATCGTCTCTGGTTG
ATTCCCGATGTTGTCCGATCCACATCCGCGTCCAAACTCATTCCGTGCTT
GGCCCTTCGTAAAGCCTGCAGCAGGGGCTAAGGAAGCACTGTGCTGGTGC
CGCTCGAGTCATCGTCCAACCTGGACGATCTACTCTATTTCCTGTTTCCT
CTCTGGTGCTACCCACCTTGGTGCGGCCTGCGCACCGCACGCATGCCCCA
CTTGCTGACCTATCCTGAACCTGTCCGTGAATGCGCCAGGGTAAGGATGT
GAACTTTGAGGCCGCCCGACTGCTCATGGCTCTCAAGGACTTCGAGGCCG
CTCTTGTGTTGTTCCGTCGGTCCGACAGGTGAGGAAACGCATCGCAGCAA
CCAGCCTGACGACGTACAATTCGTTGACGAGTTCGTCTCTGCTGAAAAGC
TCGGACGTTATCTCGTTGTTTTGGCAGTTTGTGCGACAAGAATGACGTTG
TCACGGTTGCGTCTCAGGTAGACAGCTGCGGATGTCTGGAGGAGGTACTG
AGCAGAGGCGGGAACGATTTTTGATGTGTAGACGAGAACAACAGGAACAA
TTTTTGTTCACTCCAGACCGTTTGTGTGCGGATATCTGCTGAGATAGGCG
TTCTTCCTTTTAGTGGCGGCTGGGACCTTCGGCGTTCGCTGTTGCTTGTT
CACTAATGCCGCCTACCGGGGTTGGATTTTGCCCGAACATTTTCGTTTGG
TGCATGTAGCGCGCCAGTTACTTTTTCTGCTGCTGCTGCTGCTGCTGCCT
CGGTTGCGCCGTTGCTGTTCGTTTGCGTGGCTGTAAACCACGCCATGAGA
ATCACCCGCTCGTGTTTCGACAATGCGTGCACTGTGACGATGGGGTGGCC
TACTCTTGTAATGGAAAACCCGCTTTCATAACGTTTGTAGCGCACAAAAT
AGAACCGTCTCGCAGAATTGACATCGAATTGAGACAAAGAACGCCTGTCT
GTGTCAATCACCTGGTCCGTGCCCCAACATAATTCAGCGTGTCCGGAGAG
CACCATGTCACCTCCCACAACATGGGCATGAGCTACTTTTACCTGGGAAG
ACTGAGGGAAGCGAAGGAGTGCTTCGAACGCAGCCTCGAGCTTGACGAGG
TATTTGGTTTCTCCTCGGTACCAAGTATTGTTGTTCCGTCCACGTCACTA
CGCCGTTGGTTGTTCAGCGACACAGGGTAGTGTCACGATGGTCATTATTT
GTTCATTATGGTCTTGTCAAGACCGCGGTCAATATGTTGAGCTTGCGAAA
TAAACCCGGGACACCAGACGTTTGCAGTGTGCAGGTCTTCTTCAAAACGT
GTCCCGAAGTAGTGGACAATTATTTACCGTTGGGTGTCGTTTGTCCTCTT
TTTGCTCGTGAAGAGCACCGCACCTGCACGAGTCATGGCGCATCGTAACG
GTTTCCGCTCGATGGATAAAATAGCAAGTCATTTGTTTCCCATGCATTCG
GCTTGGCAAGCACAACCTGTCTCGTTTTTGTTTTCGGGGACCCGTTTTTA
CCGAAAGACATGATCCAGCACCTTGCAGTCGTGCGGTTGGAGCACGGTGC
CCCTTCGCCTCCCGTCCTCTCGAGTCTGGTTTAGGGTTACGCAGGCTCGC
CTTTTTTCGTCGAGACGCCAACCTTCTGCCCTCCCATACTGTTGCAGACG
TACGAGGACTCCATCCGGTGGCTCGAGCATGTGCAGCGGAGCTTGGCGCC
CCCTTCCGTAGCCACGCCAGTGGCGGGTTCGGGTGCGAGACTAGGCAGCG
TCGGGACAGAGCCGCGAGACCCCGCCACGCCCAGCGGTGGGAGCGCTGCC
AGCAGTAGCAGCGGCAGGACACCGGTCAGCCAGTTGGAAGGAAACCTCAA
CACGCTGTCTATCTAGCGCCGCAAGCGCAATAACGTAGTTGAATTTGTAA
CAGTAGCGTGCGTGAAGAAGGGGCCGACCGTGATCCCTAGATACCGGTAA
ATATCTCTGAACTTGTGGTTTTTTCGCTCAAGAAGAGCGAACAAGCGCTC
CAGCCGCCTTGTGTACATGCCCTTGTTGACGTGGGCCAAGTGGAGGTCTG
TCGCGAATGGCGGAGGAAATACCACAATGGATACGTATATCGTGCGGTGT
TCTTGTTGGTTTAGGCCAGGTTAAGGTTGCCGTGTTGTTCGAGTCTTACT
TTGCCAAAATCCCCTTTCTAAGGACCTTGATGAAAAGTCTAGTCTAGTTG
TCGGGATAGGCTAGGGGTTGGGAAAGCAAGCGACACGCCGAATACCGGAC
CACACCCTCGTGCGGTTTGATTGCCGGCCGACAAGAGCTATCCATTGAGC
CGGGGATGGGGGAGAGGGCCAGTCGAATGTGTTTTGGCGGAGGACAGCAC
ACGAGAGCCAAATTTTGCTTGATGGCACAAGAAACGCACAATCTGGCGGT
TGATGTTGCTGCAGCTAAGCGTGGTCATGCCCGTACAACCATCGACCGGT
CACTGCCGTGCATTGCAACACCATGGCCTCTGGTGTGCATAAGAAAAAGT
TGCAATCCATGAAGCTTGTAACGGCTCCTGTTGTGAAAAATACCTTTGGC
CGAGATGGGTACGATTAGCAGAGGTTTTTGTTCCGAGCGGTTGTGGCTTT
GAGTAGATAAAGACATATCGTCATCCCAAATGGGGGGTGCCTGACTGATC
CAAGCGCGAATCGATCATTCATCTGGGTGCGATCTAGGTAGTTCTCAATC
GAAACCGCCGGCAGAAGTTCGAATCTTCATGTATAGATGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8810:1205..5845-

>mRNA_Ecto-sp13_S_contig8810.20297.1 ID=mRNA_Ecto-sp13_S_contig8810.20297.1|Name=mRNA_Ecto-sp13_S_contig8810.20297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8810:1205..5845- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTCAAGGACTTCGAGGCCGCTCTTGTGTTGTTCCGTCGGTCCGA
CAGCGTGTCCGGAGAGCACCATGTCACCTCCCACAACATGGGCATGAGCT
ACTTTTACCTGGGAAGACTGAGGGAAGCGAAGGAGTGCTTCGAACGCAGC
CTCGAGCTTGACGAGACGTACGAGGACTCCATCCGGTGGCTCGAGCATGT
GCAGCGGAGCTTGGCGCCCCCTTCCGTAGCCACGCCAGTGGCGGGTTCGG
GTGCGAGACTAGGCAGCGTCGGGACAGAGCCGCGAGACCCCGCCACGCCC
AGCGGTGGGAGCGCTGCCAGCAGTAGCAGCGGCAGGACACCGGTCAGCCA
GTTGGAAGGAAACCTCAACACGCTGTCTATCTAG
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