mRNA_Ecto-sp13_S_contig1243.2019.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1243.2019.1
Unique NamemRNA_Ecto-sp13_S_contig1243.2019.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1243.2019.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 6.520e-43
Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 1 
Query:    1 LSGIDAFSAARSAAPGRDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TEAVLPAGDGLDTSSATTGGAGGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDTSRNLHDSGSTSTTAVLSNFAEV 393
            + GIDAFSAARSAAPGRDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TEAVLPAG+GLDTSSATTGG  GEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTD SRNLHDSGSTSTTAVL+NFAEV
Sbjct: 1484 IEGIDAFSAARSAAPGRDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAVLPAGEGLDTSSATTGGXXGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEV 1618
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1243.2019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHH6_ECTSI6.520e-4391.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1243contigEcto-sp13_S_contig1243:809..1476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.2
Seed ortholog evalue6.4e-37
Seed eggNOG ortholog2880.D8LHH6
Model size393
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28MMI@1,2QU5A@2759
Cds size393
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.974074-CDS-Ecto-sp13_S_contig1243:808..10451681462661.974074-CDS-Ecto-sp13_S_contig1243:808..1045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1243 809..1045 +
1681462661.9856033-CDS-Ecto-sp13_S_contig1243:1320..14761681462661.9856033-CDS-Ecto-sp13_S_contig1243:1320..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1243 1321..1476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1243.2019.1prot_Ecto-sp13_S_contig1243.2019.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1243 809..1476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1243.2019.1

>prot_Ecto-sp13_S_contig1243.2019.1 ID=prot_Ecto-sp13_S_contig1243.2019.1|Name=mRNA_Ecto-sp13_S_contig1243.2019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
LSGIDAFSAARSAAPGRDSTESSASAAAAAAAAAATAAASTASTASLAAL
TEAVLPAGDGLDTSSATTGGAGGEGESAKSRPFSPRSDFMASRVRLCSAG
SDVTIGTDTSRNLHDSGSTSTTAVLSNFAEV
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mRNA from alignment at Ecto-sp13_S_contig1243:809..1476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1243.2019.1 ID=mRNA_Ecto-sp13_S_contig1243.2019.1|Name=mRNA_Ecto-sp13_S_contig1243.2019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1243:809..1476+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTATCAGGAATCGATGCTTTCTCTGCGGCAAGATCGGCGGCCCCAGGACG
CGATAGTACCGAGTCTTCGGCTAGTGCTGCTGCCGCCGCCGCCGCAGCGG
CGGCAACAGCAGCAGCCTCTACGGCAAGCACGGCAAGCTTGGCGGCGTTG
ACGGAGGCGGTGCTGCCGGCTGGCGACGGGTTGGACACCTCGTCGGCGAC
AACCGGCGGGGCCGGGGGCGAGGGGGAGTCTGCTAAGGTGCGGAGCGGCG
ACGGAACCAAACAAATTGCCGCCTCCATTTTCGTGCGATTCAAGTCACGG
GCGGAAGACGTAGGCTCGATTGAGATTAACATGTAAATTACGATTTTTGT
TGTCGAAGCACACGCGAAAATGTCAATTTGTCGAAACCTCAAAGACATTC
ATGATAGCGTACACAAGTATGTTGAAAATTTAGCTACAGTAGCAGGCGGC
ATCGAAGGGGTCATTTGACCACGCCGCTTCCATCACGCCCTCTTTTGGTG
CCCGTTCGACAGTCGAGGCCGTTCAGCCCACGGTCGGACTTCATGGCCTC
TCGCGTCAGGCTGTGCAGCGCGGGGTCTGACGTGACCATCGGGACCGACA
CAAGCCGTAACCTTCACGACTCGGGATCGACGTCCACAACGGCAGTGCTC
AGCAACTTTGCGGAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1243:809..1476+

>mRNA_Ecto-sp13_S_contig1243.2019.1 ID=mRNA_Ecto-sp13_S_contig1243.2019.1|Name=mRNA_Ecto-sp13_S_contig1243.2019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1243:809..1476+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTATCAGGAATCGATGCTTTCTCTGCGGCAAGATCGGCGGCCCCAGGACG
CGATAGTACCGAGTCTTCGGCTAGTGCTGCTGCCGCCGCCGCCGCAGCGG
CGGCAACAGCAGCAGCCTCTACGGCAAGCACGGCAAGCTTGGCGGCGTTG
ACGGAGGCGGTGCTGCCGGCTGGCGACGGGTTGGACACCTCGTCGGCGAC
AACCGGCGGGGCCGGGGGCGAGGGGGAGTCTGCTAAGTCGAGGCCGTTCA
GCCCACGGTCGGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGG
TCTGACGTGACCATCGGGACCGACACAAGCCGTAACCTTCACGACTCGGG
ATCGACGTCCACAACGGCAGTGCTCAGCAACTTTGCGGAGGTC
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