mRNA_Ecto-sp13_S_contig87062.20170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.510e-73 Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 1
Query: 19 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIARK 384
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK +K
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 223 bits (569), Expect = 9.020e-73 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
Query: 16 TMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
TMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 45 TMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 162
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 214 bits (545), Expect = 5.470e-69 Identity = 110/119 (92.44%), Postives = 117/119 (98.32%), Query Frame = 1
Query: 13 PTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
P MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 50 PNMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 168
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.230e-68 Identity = 109/117 (93.16%), Postives = 116/117 (99.15%), Query Frame = 1
Query: 19 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 207 bits (527), Expect = 3.480e-67 Identity = 105/117 (89.74%), Postives = 114/117 (97.44%), Query Frame = 1
Query: 19 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPK 117
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.590e-64 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query: 19 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 199 bits (505), Expect = 8.660e-64 Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 19 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIAR 381
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPK A+
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 199 bits (506), Expect = 1.780e-63 Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 1
Query: 19 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 369
MSGKGKGGRGK KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPK
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPK 121
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A2R5GVM3_9STRA (Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.050e-63 Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 19 MSGKGKGGRGKK---STTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLP 366
MSGKGKGGRGKK +TTRSAKAGLQFPVGR+ R+LKKG YA+RVG GAPVY+AAVLEYL AE+LELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVL+P
Sbjct: 1 MSGKGKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLMP 119
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: I0YL04_COCSC (Histone H2A (Fragment) n=5 Tax=Coccomyxa TaxID=41891 RepID=I0YL04_COCSC) HSP 1 Score: 197 bits (502), Expect = 3.320e-63 Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 1
Query: 25 GKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIARK 384
G+GKG GKK +RSAKAGLQFPVGR+ R+LKKGKYASRVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK RIIPRHIQLAVRNDEEL+KLLG VTIASGGVLPNIH+VLLPKT +K
Sbjct: 1 GRGKGKSGKKQVSRSAKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGNVTIASGGVLPNIHSVLLPKTKGKK 120 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig87062.20170.1 >prot_Ecto-sp13_S_contig87062.20170.1 ID=prot_Ecto-sp13_S_contig87062.20170.1|Name=mRNA_Ecto-sp13_S_contig87062.20170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLback to top mRNA from alignment at Ecto-sp13_S_contig87062:114..497+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig87062.20170.1 ID=mRNA_Ecto-sp13_S_contig87062.20170.1|Name=mRNA_Ecto-sp13_S_contig87062.20170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87062:114..497+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87062:114..497+ >mRNA_Ecto-sp13_S_contig87062.20170.1 ID=mRNA_Ecto-sp13_S_contig87062.20170.1|Name=mRNA_Ecto-sp13_S_contig87062.20170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87062:114..497+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |