prot_Ecto-sp13_S_contig87062.20170.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig87062.20170.1
Unique Name	prot_Ecto-sp13_S_contig87062.20170.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	122

Homology

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 3.390e-73
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIARK 122
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK   +K
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.170e-71
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:   46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 162

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.770e-68
Identity = 109/117 (93.16%), Postives = 116/117 (99.15%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.430e-67
Identity = 109/117 (93.16%), Postives = 116/117 (99.15%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:   52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 168

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 7.820e-67
Identity = 105/117 (89.74%), Postives = 114/117 (97.44%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPK 117

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 3.150e-64
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.950e-63
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 0

Query:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIAR 121
            MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPK  A+
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 4.000e-63
Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 0

Query:    1 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGK    KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPK 121

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: A0A2R5GVM3_9STRA (Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.620e-63
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 0

Query:    1 MSGKGKGGRGKK---STTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLP 116
            MSGKGKGGRGKK   +TTRSAKAGLQFPVGR+ R+LKKG YA+RVG GAPVY+AAVLEYL AE+LELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVL+P
Sbjct:    1 MSGKGKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLMP 119

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BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Match: I0YL04_COCSC (Histone H2A (Fragment) n=5 Tax=Coccomyxa TaxID=41891 RepID=I0YL04_COCSC)

HSP 1 Score: 196 bits (499), Expect = 7.470e-63
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0

Query:    3 GKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIARK 122
            G+GKG  GKK  +RSAKAGLQFPVGR+ R+LKKGKYASRVGAGAPVYLAAVLEYL AEVLELAGNAARDNKK RIIPRHIQLAVRNDEEL+KLLG VTIASGGVLPNIH+VLLPKT  +K
Sbjct:    1 GRGKGKSGKKQVSRSAKAGLQFPVGRIARYLKKGKYASRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLGNVTIASGGVLPNIHSVLLPKTKGKK 120

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig87062.20170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	3.390e-73	96.72	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	1.170e-71	100.00	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	2.770e-68	93.16	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	1.430e-67	93.16	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	7.820e-67	89.74	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5KGY1_9PHAE	3.150e-64	100.00	Integrase catalytic domain-containing protein n=7 ...	[more]
A0A6U2JFS4_9STRA	1.950e-63	85.25	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A7S0DT92_9EUKA	4.000e-63	85.12	Histone H2A n=1 Tax=Amorphochlora amoebiformis Tax...	[more]
A0A2R5GVM3_9STRA	4.620e-63	87.39	Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=3513...	[more]
I0YL04_COCSC	7.470e-63	85.83	Histone H2A (Fragment) n=5 Tax=Coccomyxa TaxID=418...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 12..34 score: 68.99 coord: 56..69 score: 90.54 coord: 98..116 score: 76.04 coord: 70..84 score: 77.52 coord: 41..56 score: 90.36
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..121 e-value: 1.1E-77 score: 274.1
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 90..118 e-value: 5.4E-18 score: 64.4
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..122 e-value: 5.3E-61 score: 206.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 2..120
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 11..87 e-value: 1.5E-15 score: 57.7
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..118
None	No IPR available	PANTHER	PTHR23430:SF251		coord: 5..118
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 20..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig87062	contig	Ecto-sp13_S_contig87062:132..497 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig87062.20170.1	mRNA_Ecto-sp13_S_contig87062.20170.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig87062 114..497 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig87062.20170.1 ID=prot_Ecto-sp13_S_contig87062.20170.1|Name=mRNA_Ecto-sp13_S_contig87062.20170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYL
AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVT
IASGGVLPNIHAVLLPKTIARK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032458	Histone_H2A_CS