mRNA_Ecto-sp13_S_contig8700.20166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8700.20166.1
Unique NamemRNA_Ecto-sp13_S_contig8700.20166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8700.20166.1 vs. uniprot
Match: Q6XLU8_9PHYC (FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU8_9PHYC)

HSP 1 Score: 92.0 bits (227), Expect = 1.230e-20
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 1 
Query:   25 KIRFECVIGFICVILAYVRYKDGWDPLSDKYLGS-TGYLWSHFVMYFMMGYIDFLGDKYPYAYAFGLSAVWELTELAIGVGTNSVQYWTSGGPQGQMKDIIFNMTGLFVGRQIQKVFPCRLNNCPKKLVDTYEAMAVTTTLVSVFNLLLRN 474
            +I F   IG +C  L+ + + D  DP+    +G  TGY  SHF+MYF++GY++FL   Y    A   S  WEL E   G  +   +YWTSGG  GQ  DI  N +G  +G  + + FPC L+NC   L+  Y   ++T  ++    +  R+
Sbjct:   15 EIAFLATIGLVCGALSQL-HDD--DPVLQSQVGPLTGYQASHFLMYFIIGYVNFL-SVYDVLSA---SIAWELFEYIYGKTSGQERYWTSGGTYGQFGDICLNTSGYILGVWLSRHFPCPLHNCRHSLIQGYVISSLTVVMIGYLKVQFRS 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8700.20166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XLU8_9PHYC1.230e-2035.76FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8700contigEcto-sp13_S_contig8700:4994..5470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categorysignal anchor
Exons1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.2938225-CDS-Ecto-sp13_S_contig8700:4993..54701681464143.2938225-CDS-Ecto-sp13_S_contig8700:4993..5470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8700 4994..5470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8700.20166.1prot_Ecto-sp13_S_contig8700.20166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8700 4994..5470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8700.20166.1

>prot_Ecto-sp13_S_contig8700.20166.1 ID=prot_Ecto-sp13_S_contig8700.20166.1|Name=mRNA_Ecto-sp13_S_contig8700.20166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MKTLGIGRKIRFECVIGFICVILAYVRYKDGWDPLSDKYLGSTGYLWSHF
VMYFMMGYIDFLGDKYPYAYAFGLSAVWELTELAIGVGTNSVQYWTSGGP
QGQMKDIIFNMTGLFVGRQIQKVFPCRLNNCPKKLVDTYEAMAVTTTLVS
VFNLLLRN*
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mRNA from alignment at Ecto-sp13_S_contig8700:4994..5470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8700.20166.1 ID=mRNA_Ecto-sp13_S_contig8700.20166.1|Name=mRNA_Ecto-sp13_S_contig8700.20166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8700:4994..5470+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGACACTGGGAATAGGTCGAAAGATAAGGTTCGAATGTGTGATAGG
TTTTATATGCGTAATACTCGCATATGTTAGATATAAAGATGGATGGGATC
CATTGTCTGATAAGTACCTGGGTTCCACTGGGTACTTGTGGTCACATTTT
GTAATGTATTTCATGATGGGGTACATTGATTTTTTAGGTGACAAGTACCC
CTACGCGTACGCTTTTGGTCTATCGGCTGTATGGGAATTAACGGAGTTAG
CCATAGGGGTAGGGACTAACAGTGTTCAATACTGGACATCTGGGGGACCA
CAGGGACAGATGAAAGACATTATTTTTAATATGACTGGTTTATTTGTAGG
AAGACAGATACAAAAAGTATTTCCTTGTAGACTGAATAATTGTCCAAAGA
AACTGGTCGACACGTACGAGGCAATGGCCGTTACTACGACTTTAGTTTCT
GTTTTCAATTTATTATTACGAAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8700:4994..5470+

>mRNA_Ecto-sp13_S_contig8700.20166.1 ID=mRNA_Ecto-sp13_S_contig8700.20166.1|Name=mRNA_Ecto-sp13_S_contig8700.20166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8700:4994..5470+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGACACTGGGAATAGGTCGAAAGATAAGGTTCGAATGTGTGATAGG
TTTTATATGCGTAATACTCGCATATGTTAGATATAAAGATGGATGGGATC
CATTGTCTGATAAGTACCTGGGTTCCACTGGGTACTTGTGGTCACATTTT
GTAATGTATTTCATGATGGGGTACATTGATTTTTTAGGTGACAAGTACCC
CTACGCGTACGCTTTTGGTCTATCGGCTGTATGGGAATTAACGGAGTTAG
CCATAGGGGTAGGGACTAACAGTGTTCAATACTGGACATCTGGGGGACCA
CAGGGACAGATGAAAGACATTATTTTTAATATGACTGGTTTATTTGTAGG
AAGACAGATACAAAAAGTATTTCCTTGTAGACTGAATAATTGTCCAAAGA
AACTGGTCGACACGTACGAGGCAATGGCCGTTACTACGACTTTAGTTTCT
GTTTTCAATTTATTATTACGAAATTGA
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