prot_Ecto-sp13_S_contig8700.20166.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8700.20166.1
Unique Name	prot_Ecto-sp13_S_contig8700.20166.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	159

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8700.20166.1 vs. uniprot
Match: Q6XLU8_9PHYC (FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU8_9PHYC)

HSP 1 Score: 92.0 bits (227), Expect = 1.230e-20
Identity = 54/151 (35.76%), Postives = 80/151 (52.98%), Query Frame = 0

Query:    9 KIRFECVIGFICVILAYVRYKDGWDPLSDKYLGS-TGYLWSHFVMYFMMGYIDFLGDKYPYAYAFGLSAVWELTELAIGVGTNSVQYWTSGGPQGQMKDIIFNMTGLFVGRQIQKVFPCRLNNCPKKLVDTYEAMAVTTTLVSVFNLLLRN 158
            +I F   IG +C  L+ + + D  DP+    +G  TGY  SHF+MYF++GY++FL   Y    A   S  WEL E   G  +   +YWTSGG  GQ  DI  N +G  +G  + + FPC L+NC   L+  Y   ++T  ++    +  R+
Sbjct:   15 EIAFLATIGLVCGALSQL-HDD--DPVLQSQVGPLTGYQASHFLMYFIIGYVNFL-SVYDVLSA---SIAWELFEYIYGKTSGQERYWTSGGTYGQFGDICLNTSGYILGVWLSRHFPCPLHNCRHSLIQGYVISSLTVVMIGYLKVQFRS 158

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8700.20166.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8700.20166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Q6XLU8_9PHYC	1.230e-20	35.76	FirrV-1-H2 n=1 Tax=Feldmannia irregularis virus a ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..158
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..59
None	No IPR available	TMHMM	TMhelix		coord: 12..28
None	No IPR available	TMHMM	TMhelix		coord: 43..62

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8700	contig	Ecto-sp13_S_contig8700:4994..5470 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8700.20166.1	mRNA_Ecto-sp13_S_contig8700.20166.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8700 4994..5470 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8700.20166.1 ID=prot_Ecto-sp13_S_contig8700.20166.1|Name=mRNA_Ecto-sp13_S_contig8700.20166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MKTLGIGRKIRFECVIGFICVILAYVRYKDGWDPLSDKYLGSTGYLWSHF
VMYFMMGYIDFLGDKYPYAYAFGLSAVWELTELAIGVGTNSVQYWTSGGP
QGQMKDIIFNMTGLFVGRQIQKVFPCRLNNCPKKLVDTYEAMAVTTTLVS
VFNLLLRN*