prot_Ecto-sp13_S_contig10171.201.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10171.201.1
Unique Nameprot_Ecto-sp13_S_contig10171.201.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length459
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Match: A0A6H5K584_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K584_9PHAE)

HSP 1 Score: 536 bits (1380), Expect = 1.200e-188
Identity = 283/306 (92.48%), Postives = 291/306 (95.10%), Query Frame = 0 
Query:  153 MAHRGTLSPRWQGATSSSSVRSRGADVPDEEKEILADPERSGPVHAIRARAPSSYGYIFLATLEGVLSASSFRSACAVSVPIISTFPLNNPAEEALISASASAFAVAGAVRSGAALALGTPFFLLAARCAIFALNRVRIPAVQRLQLQQPRLGFPLPAGVDEKVAVDLYVIGLAAAVLGGCVPALEMAGIFLGDSLKGRPPVWVVLAFLVLIPVIYLALGAWLDLSSPGEGFIARTRPTTAMCGLCAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAACEEDDMGASAHL 458
            MAHRGTLSPRWQGATS+SS RSRGADVPDEEKEILADPERSGPVHAIRARAPSSY YIFLATLEGVLSASSFRSA AVSVPIIS FPL+NPAEEALISASASAFAVA AVRSGAALALGTPFFLLAARCAI AL+RVRIPAVQRLQLQQPRLGFPLP GVDE VAVDLY+IGLAAAVLGGCVPALEMAGI LG SLKGR PVWVV AF+VLIPV+YLALGAWL+LSSPGEGF+ARTRPTTAM GL AAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAA EEDDMGASAHL
Sbjct:    1 MAHRGTLSPRWQGATSTSSARSRGADVPDEEKEILADPERSGPVHAIRARAPSSYRYIFLATLEGVLSASSFRSARAVSVPIISAFPLHNPAEEALISASASAFAVAAAVRSGAALALGTPFFLLAARCAILALSRVRIPAVQRLQLQQPRLGFPLPTGVDENVAVDLYIIGLAAAVLGGCVPALEMAGILLGVSLKGRSPVWVVSAFVVLIPVVYLALGAWLNLSSPGEGFVARTRPTTAMWGLSAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAASEEDDMGASAHL 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K584_9PHAE1.200e-18892.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 320..342
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..319
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 412..417
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 372..390
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..371
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 391..411
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 418..438
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 439..458
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 343..353
NoneNo IPR availableTMHMMTMhelixcoord: 419..441
NoneNo IPR availableTMHMMTMhelixcoord: 322..344
NoneNo IPR availableTMHMMTMhelixcoord: 353..375
NoneNo IPR availableTMHMMTMhelixcoord: 390..412

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10171contigEcto-sp13_S_contig10171:3286..5730 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10171.201.1mRNA_Ecto-sp13_S_contig10171.201.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10171 2907..5969 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10171.201.1 ID=prot_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=459bp
MCMSVFYAAAAIAGKTNSSFKYSDLAIHLSRGSCACVTEEGLRVWYGQQV
LGVEWRNSRRRTFICAFVARKSLQIFAPDRAIVVKSESEKSCQKRLQTST
CLATSYAPIKRGRTRTDDRVSGSERDGSGSVWTSTVRQGKSSLAARREEV
KEMAHRGTLSPRWQGATSSSSVRSRGADVPDEEKEILADPERSGPVHAIR
ARAPSSYGYIFLATLEGVLSASSFRSACAVSVPIISTFPLNNPAEEALIS
ASASAFAVAGAVRSGAALALGTPFFLLAARCAIFALNRVRIPAVQRLQLQ
QPRLGFPLPAGVDEKVAVDLYVIGLAAAVLGGCVPALEMAGIFLGDSLKG
RPPVWVVLAFLVLIPVIYLALGAWLDLSSPGEGFIARTRPTTAMCGLCAA
GHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAACEED
DMGASAHL*
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