Homology
BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Match:
A0A6H5K584_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K584_9PHAE)
HSP 1 Score: 536 bits (1382), Expect = 8.840e-186
Identity = 283/306 (92.48%), Postives = 291/306 (95.10%), Query Frame = 3
Query: 696 MAHRGTLSPRWQGATSSSSVRSRGADVPDEEKEILADPERSGPVHAIRARAPSSYGYIFLATLEGVLSASSFRSACAVSVPIISTFPLNNPAEEALISASASAFAVAGAVRSGAALALGTPFFLLAARCAIFALNRVRIPAVQRLQLQQPRLGFPLPAGVDEKVAVDLYVIGLAAAVLGGCVPALEMAGIFLGDSLKGRPPVWVVLAFLVLIPVIYLALGAWLDLSSPGEGFIARTRPTTAMCGLCAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAACEEDDMGASAHL 1613
MAHRGTLSPRWQGATS+SS RSRGADVPDEEKEILADPERSGPVHAIRARAPSSY YIFLATLEGVLSASSFRSA AVSVPIIS FPL+NPAEEALISASASAFAVA AVRSGAALALGTPFFLLAARCAI AL+RVRIPAVQRLQLQQPRLGFPLP GVDE VAVDLY+IGLAAAVLGGCVPALEMAGI LG SLKGR PVWVV AF+VLIPV+YLALGAWL+LSSPGEGF+ARTRPTTAM GL AAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAA EEDDMGASAHL
Sbjct: 1 MAHRGTLSPRWQGATSTSSARSRGADVPDEEKEILADPERSGPVHAIRARAPSSYRYIFLATLEGVLSASSFRSARAVSVPIISAFPLHNPAEEALISASASAFAVAAAVRSGAALALGTPFFLLAARCAILALSRVRIPAVQRLQLQQPRLGFPLPTGVDENVAVDLYIIGLAAAVLGGCVPALEMAGILLGVSLKGRSPVWVVSAFVVLIPVVYLALGAWLNLSSPGEGFVARTRPTTAMWGLSAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAASEEDDMGASAHL 306
BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Match:
D7FJ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ43_ECTSI)
HSP 1 Score: 68.2 bits (165), Expect = 6.160e-11
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 2
Query: 650 TGKIQLGSAEGGGEGNGASRYTFTPLARGNLFFLCQVQGG 769
G+IQLGS EGGGEGNGASRYTFTPLARG FLC VQGG
Sbjct: 18 AGEIQLGSVEGGGEGNGASRYTFTPLARG---FLCPVQGG 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.84e-186 / Id = 92.48 Expect = 6.16e-11 / Id = 82.50 Sequence A0A6H5K584_9PHAE D7FJ43_ECTSI
Match Name E-value Identity Description
A0A6H5K584_9PHAE 8.840e-186 92.48 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FJ43_ECTSI 6.160e-11 82.50 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1995 Hectar predicted targeting category other localisation Exons 3 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-10_000060.2 Cds size 1377
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462512.781118-UTR-Ecto-sp13_S_contig10171:2906..3285 1681462512.781118-UTR-Ecto-sp13_S_contig10171:2906..3285 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10171 2907..3285 - 1681462512.8241656-UTR-Ecto-sp13_S_contig10171:5730..5969 1681462512.8241656-UTR-Ecto-sp13_S_contig10171:5730..5969 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10171 5731..5969 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462512.7911084-CDS-Ecto-sp13_S_contig10171:3285..4064 1681462512.7911084-CDS-Ecto-sp13_S_contig10171:3285..4064 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10171 3286..4064 - 1681462512.799802-CDS-Ecto-sp13_S_contig10171:4921..5118 1681462512.799802-CDS-Ecto-sp13_S_contig10171:4921..5118 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10171 4922..5118 - 1681462512.808141-CDS-Ecto-sp13_S_contig10171:5329..5730 1681462512.808141-CDS-Ecto-sp13_S_contig10171:5329..5730 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10171 5330..5730 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10171.201.1
>prot_Ecto-sp13_S_contig10171.201.1 ID=prot_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=459bp
MCMSVFYAAAAIAGKTNSSFKYSDLAIHLSRGSCACVTEEGLRVWYGQQV back to top mRNA from alignment at Ecto-sp13_S_contig10171:2907..5969-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10171.201.1 ID=mRNA_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10171:2907..5969- (Ectocarpus species13 EcNAP12_S_4_19m)AAGGAGATTTTCTTCACGAAACTGGCGGAATGCGGAGGCGTGATCATTTA
TGTTAAGTGAGCAACGGTGAGAAAGCAGGCAAACCCCTTCATACCACGTC
GCGAAACCGGCCACAGCGTGTAACTCAAGCTTGGAAAACGAGTTGGTGGC
ACAAGACCTGGCGTTGTGCCTTCCAATCGGAGCCAGGAAGACCTCGATCA
TGCTCACATCCAACACAAAATGTTGACACAGACTCACAA ATGTGTATGTC
TGTGTTTTACGCGGCTGCGGCCATCGCAGGCAAAACCAACTCGTCGTTCA
AGTATTCTGACTTGGCGATTCATTTATCGCGTGGATCGTGCGCCTGTGTG
ACGGAAGAGGGTCTACGTGTGTGGTACGGGCAACAGGTCCTTGGCGTGGA
ATGGCGGAACTCTCGTCGTAGAACTTTTATTTGCGCTTTTGTCGCGAGAA
AGAGTTTGCAAATTTTTGCTCCAGATCGTGCGATTGTTGTCAAAAGCGAA
AGTGAGAAAAGTTGTCAGAAACGTTTGCAAACTTCAACTTGTCTCGCGAC
TTCTTATGCTCCCATCAAACGCGGTAGGACACGTACTGATGACAGGGTGT
CTGGTTCTGAGCGTGATGGCTCTGGTTCGGTCTGGACCAG GTGTGATAAA
TACTATACGGAGAAAGTTCTTGAGAAGGCCACTCCTTGTGGATGTCGTTA
TCGACACTCTCGCCCCACTGTAGATCATTTACAGTCCGCCTGTTTCACGT
CGGTAGTACCGTCCTCGGACGCACAGCACATGCCGATTCAAACGACCCCG
TTCATCGCAAGCCCGTACTACAAATCGTTGCGCTTTCCACGTGCCGTATA
GCACCGTCAGACAGGGAAAATCCAGCTTGGCAGCGCGGAGGGAGGAGGTG
AAGGAAATGGCGCATCGAGGTACACTTTCACCCCGTTGGCAAGGGGCAAC
CTCTTCTTCCTCTGTCAGGTCCAGGGGGGCTGATGTACCTGATGAGGAGA
AGGAGATTCTTGCAGACCCGGAGCGCTCGGGCCCGGTTCACGCCATTC GT
GAGTCCACTTGTCCGCTTACATGCACCTGACCCTCTTCAGCAGCTTGAGT
CCTACGTGACGCTGAGGCGTTGGCCGTGGGCACTGTGCCGACGTATGGGT
AACCAGACTGGGTGTGATGGTTGCGCTAGCGTACATTCTGGTCGCATGCT
GTGGTAGCCGGTCGCATTGTGTGCTCCTTGCTGTGTTATTTATGTCATCT
GTGGAATCTGTCTACGATGTTCAATGTTATGGTAAAGAGCGTGGCAATGC
ACGGTGTGTCTCCTGTACCTGATGGCTTGCGAGTATCTTTTGCGCTACAG
CAATGCTTCTGCACTACATATTGTAATAGCAGAGCGTTCCAAACGGTGTG
CGAAGTGTCTGCGCATGTGCTTTGGGTGTTTTTTTCCCTGCTTTCCCGGC
GGGATCGAACAACTGATGAACACAGCCGTTTTTGCGAGTGATACATACGT
TGTTGTCTTTTGTTTTTGGGGGGGATGAGAGAATGTCGCCCAGTCGCCGT
TTGCATCGTTGGAGTGCTTTGTAAAGGGGGGGAAAGCACCGTAGGTGCAT
ACAAGACAGCCGCAGTTTCTCTTTTGGTGTTTTCGTCTTGGCGCGGCGCC
AACTTCCCCCCGGAAAAGACATCGCTACAGCTGTACGTTCAGCACAGGGC
CGTTTCGCCGGACGCAAAGAGTAGGCTGATATAGTTGGACGCTGCGCTCG
CCACGATGATGACTTCATGACTTCAGTTTTAAAACGTGCCAACCTCACGA
AAACATCATGCTACAGAGCATGCAAGGTTGCCCCAAGCTTGTCGCAACGT
TTAAATTTCGAAAGCCCGCTGCCCTCGCGCCCATTCGAATGAACGACGTC
TGCAGGGGCTCGAGCTCCAAGCAGCTACGGCTACATCTTTCTCGCTACGC
TTGAAGGGGTCTTGTCGGCTTCTTCTTTTCGTTCTGCATGCGCCGTCTCT
GTGCCGATAATTAGCACCTTCCCTCTCAACAACCCAGCCGAGGAGGCGTT
GATTTCAGCATCAGCATCAGCTTTCGCCGTTGCTGGAGCAGTGCGTTCCG
GCGCCGCGCTAGCCCTGGGGACGCCTTTCTTTCTCTTGGCAGCACGGTGT
GCTATTTTCGCCCTGAACCGCGTGAGGATTCCAGCGGTGCAGAGGCTACA
GCTACAGCAACCCAGGCTGGGATTTCCCCTGCCCGCTGGCGTGGACGAGA
AGGTTGCAGTGGACCTATACGTTATCGGCTTGGCCGCGGCGGTGTTAGGC
GGGTGTGTACCGGCGCTCGAGATGGCGGGAATCTTCTTGGGGGATTCTCT
GAAGGGAAGGCCACCTGTGTGGGTCGTTTTGGCCTTCTTGGTGTTGATTC
CAGTGATATATCTGGCCCTGGGCGCGTGGCTTGACCTTAGCTCGCCAGGT
GAAGGGTTCATCGCCCGCACGAGGCCCACCACAGCGATGTGTGGGCTGTG
CGCAGCGGGGCACGTTATTCTGCTAGCCGGGTGCTTTTATTCTCCGGACG
TGTCGAGAACTTTGGGCTTTTTGCTTGGACTGGTGCACATCGTGAGGACG
CTGCTCCCCGCCTTTGCTTATCCTGCGGGCTCGGGGGCTGCGGCGTGTGA
AGAAGACGACATGGGTGCATCGGCGCACCTCTGA TTGTGTAGGGTTTGCT
CATTGAATTGGAATACTTGGTTGGTTTCGCGGGAACCCTCGAGCGTGCTG
GCTGAGACGTTGAGATGACAAAAAACTACAACGAGTGTATGCATGCGATG
GTTCAACTTCTTTTATTGCGGGTAGTTTGGGGAGGAAACGATACATCGCA
CACGTGTCATTATCTCTTATATTGTAGGTCCAAGTCGTCGCTTAGTTTTG
TTTGTGGTGTGGGTATGGCTCGATCTGTGCAGATGCGCGCCCTGTTGCGC
GTAGCGGGTTCCTTTGTTATTATCCTTGACTCTCACTTTACGCAGAACTC
TTTACGACCACTGGTTTACCGAGTAGTGCGCTTAGACTAATGTATGCTCT
GGTACGGTTTCTC back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10171:2907..5969-
>mRNA_Ecto-sp13_S_contig10171.201.1 ID=mRNA_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10171:2907..5969- (Ectocarpus species13 EcNAP12_S_4_19m) back to top