mRNA_Ecto-sp13_S_contig86781.20129.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86781.20129.1
Unique NamemRNA_Ecto-sp13_S_contig86781.20129.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86781.20129.1 vs. uniprot
Match: D7FJ00_ECTSI (Suppressor of lin-12-like protein-related / sel-1 protein-related n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ00_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.110e-30
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 DSVASLNAGTWNHVMFTFDNITSGEFSSTIFINGTLDTSVQFDGTIVLGNDGPLHIGRDTSN 186
            DSVASLNAGTWNHV+FTFDN TSGEFSSTIFINGTLD SVQFDGT VLGNDGPLHIGRDTSN
Sbjct:  288 DSVASLNAGTWNHVVFTFDNTTSGEFSSTIFINGTLDISVQFDGTTVLGNDGPLHIGRDTSN 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86781.20129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ00_ECTSI1.110e-3093.55Suppressor of lin-12-like protein-related / sel-1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86781contigEcto-sp13_S_contig86781:379..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.1
Seed ortholog evalue9.2e-26
Seed eggNOG ortholog2880.D7FJ00
Model size186
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Cds size186
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.0381792-CDS-Ecto-sp13_S_contig86781:378..5641681464140.0381792-CDS-Ecto-sp13_S_contig86781:378..564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86781 379..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86781.20129.1prot_Ecto-sp13_S_contig86781.20129.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86781 379..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86781.20129.1

>prot_Ecto-sp13_S_contig86781.20129.1 ID=prot_Ecto-sp13_S_contig86781.20129.1|Name=mRNA_Ecto-sp13_S_contig86781.20129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
DSVASLNAGTWNHVMFTFDNITSGEFSSTIFINGTLDTSVQFDGTIVLGN
DGPLHIGRDTSN
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mRNA from alignment at Ecto-sp13_S_contig86781:379..564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86781.20129.1 ID=mRNA_Ecto-sp13_S_contig86781.20129.1|Name=mRNA_Ecto-sp13_S_contig86781.20129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86781:379..564- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTCTGTAGCATCCCTCAACGCGGGAACCTGGAACCATGTGATGTTTAC
CTTCGACAACATCACGAGTGGGGAGTTCTCGTCCACCATCTTCATCAATG
GAACGCTCGATACCTCTGTGCAATTCGACGGAACAATCGTCTTAGGGAAC
GACGGGCCTCTGCACATTGGGCGCGATACGAGCAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86781:379..564-

>mRNA_Ecto-sp13_S_contig86781.20129.1 ID=mRNA_Ecto-sp13_S_contig86781.20129.1|Name=mRNA_Ecto-sp13_S_contig86781.20129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86781:379..564- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTCTGTAGCATCCCTCAACGCGGGAACCTGGAACCATGTGATGTTTAC
CTTCGACAACATCACGAGTGGGGAGTTCTCGTCCACCATCTTCATCAATG
GAACGCTCGATACCTCTGTGCAATTCGACGGAACAATCGTCTTAGGGAAC
GACGGGCCTCTGCACATTGGGCGCGATACGAGCAAT
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