mRNA_Ecto-sp13_S_contig867.20117.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig867.20117.1
Unique NamemRNA_Ecto-sp13_S_contig867.20117.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig867.20117.1 vs. uniprot
Match: A0A6H5K8M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M6_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 3.660e-154
Identity = 271/303 (89.44%), Postives = 274/303 (90.43%), Query Frame = 1 
Query:    1 MGKANRGGQKRKEAPARKQLQGRGGNSGLLHKNNQKHGAHRE-GLDGAAAMGKRTLAQQLLQPNKRARGGKRRRKSSGAPSKPGSSETAVIQAEYAAVDAREKAKEDSEYARRVR-PVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSDS--GSWGAAGGRVGIISNGRTSSSKPDQRTGGLFTNSTGRAFGSGPPAEEGGGLMAFASPSSFAGFSGTGGGAGAGRMGSVXFGGSKGGALAGAAAXXATMGGGPQ 897
            MGKANRGGQKRKEAPARKQLQG+GGNSGLLHKNN KHGAHR  G DGAAAMGKRTLAQQLLQPNKRARGGKRRRKSSG PSKPGSSETAVIQAEYAAVDAREKAKEDSE ARRVR PVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAAL DDGSDSDSDS  GS GAAGGRVGII NGRTS+SKP QRTGGLFTNSTG AFGSGPPAEEGGGLMAFASPSSFAGF+G         MGSV FGGSK GALAGA A  ATMG GPQ
Sbjct:    1 MGKANRGGQKRKEAPARKQLQGKGGNSGLLHKNNHKHGAHRAAGFDGAAAMGKRTLAQQLLQPNKRARGGKRRRKSSGTPSKPGSSETAVIQAEYAAVDAREKAKEDSEKARRVRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALEDDGSDSDSDSDHGSLGAAGGRVGIILNGRTSNSKPAQRTGGLFTNSTGCAFGSGPPAEEGGGLMAFASPSSFAGFAGXXXXXXXXXMGSVGFGGSKVGALAGATAAVATMGAGPQ 303
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BLAST of mRNA_Ecto-sp13_S_contig867.20117.1 vs. uniprot
Match: D7G3V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V9_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 4.240e-94
Identity = 183/209 (87.56%), Postives = 184/209 (88.04%), Query Frame = 1 
Query:  244 PGSSETAVIQAEYAAVDAREKAKEDSEYARRVR-PVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSDS--GSWGAAGGRVGIISNGRTSSSKPDQRTGGLFTNSTGRAFGSGPPAEEGGGLMAFASPSSFAGFSGTGGGAGAGRMGSVXFGGSKGGALAGA 861
            PGSSETAVIQAEYAAVDAREKAKEDSE ARR+R PVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDS      GS GAAGGRVGIISNGRTSSSKP QRTG LFTNS GRAFGSGPPAEEGGGLMAFASPSSFAGFSGT            XFGGSK GALAGA
Sbjct:   20 PGSSETAVIQAEYAAVDAREKAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSXXXXXXGSLGAAGGRVGIISNGRTSSSKPAQRTGALFTNSAGRAFGSGPPAEEGGGLMAFASPSSFAGFSGTXXXXXXXXXXXXXFGGSKVGALAGA 228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig867.20117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8M6_9PHAE3.660e-15489.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3V9_ECTSI4.240e-9487.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig867contigEcto-sp13_S_contig867:7638..11150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size975
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005880.1
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig867.20117.1prot_Ecto-sp13_S_contig867.20117.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig867 7638..11150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.207274-CDS-Ecto-sp13_S_contig867:7637..77731681464139.207274-CDS-Ecto-sp13_S_contig867:7637..7773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 7638..7773 +
1681464139.2241688-CDS-Ecto-sp13_S_contig867:8426..84451681464139.2241688-CDS-Ecto-sp13_S_contig867:8426..8445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 8427..8445 +
1681464139.2354586-CDS-Ecto-sp13_S_contig867:8682..87701681464139.2354586-CDS-Ecto-sp13_S_contig867:8682..8770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 8683..8770 +
1681464139.2453697-CDS-Ecto-sp13_S_contig867:9501..96561681464139.2453697-CDS-Ecto-sp13_S_contig867:9501..9656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 9502..9656 +
1681464139.2703083-CDS-Ecto-sp13_S_contig867:10136..102181681464139.2703083-CDS-Ecto-sp13_S_contig867:10136..10218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 10137..10218 +
1681464139.2801461-CDS-Ecto-sp13_S_contig867:10655..111501681464139.2801461-CDS-Ecto-sp13_S_contig867:10655..11150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 10656..11150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig867.20117.1

>prot_Ecto-sp13_S_contig867.20117.1 ID=prot_Ecto-sp13_S_contig867.20117.1|Name=mRNA_Ecto-sp13_S_contig867.20117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MGKANRGGQKRKEAPARKQLQGRGGNSGLLHKNNQKHGAHREGLDGAAAM
GKRTLAQQLLQPNKRARGGKRRRKSSGAPSKPGSSETAVIQAEYAAVDAR
EKAKEDSEYARRVRPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVE
ALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSDSDSDSGSWG
AAGGRVGIISNGRTSSSKPDQRTGGLFTNSTGRAFGSGPPAEEGGGLMAF
ASPSSFAGFSGTGGGAGAGRMGSVGFGGSKGGALAGAAAAVATMGGGPQP
AASAAAASVGSGAGNADDDDDPDL*
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mRNA from alignment at Ecto-sp13_S_contig867:7638..11150+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig867.20117.1 ID=mRNA_Ecto-sp13_S_contig867.20117.1|Name=mRNA_Ecto-sp13_S_contig867.20117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:7638..11150+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAAAGCCAACAGAGGAGGACAGAAGCGAAAGGAAGCCCCTGCGCG
GAAGCAGCTGCAGGGAAGGGGCGGAAACAGCGGATTGCTACACAAAAACA
ACCAAAAACATGGGGCTCATCGTGAAGGGTTGGACGGTGAGGTTGAGTGA
GCGAGGGCGACGAGAGGATGGGAAAACGACGGAAGAGACAGAGGATGGAA
GAGAGGAGCACACGTACTCAAAGGGATAAAGGTTGTTCGAGAGATGCGAC
TCAATTGTAGCTAGATGCGAAGTAGAAGTTCCTGCGATGAGATGACAAGA
CGCACGTCGCGTGACGTTCGAAGTATTTAGTTTGCGCCGCCAGTGGTTTG
CTCACAGCAGGCTGCGAATGTTTTGGCGAAGCGCCGTAGTAGTGTGGCAG
GTCCAGGATTACTCATAGCATATTATCCTAGTCATACACAGCCCGACAAC
GAGGAAAGCATGAAAATATTCGTGACCCTAGAAAAGATGAATGAGGCCGA
TGGTAGCGTCGGTGAAGCGGCAGATGACATCGTACTTACTTCCTTTGCAT
ACACTCATCCACGAAGAGTTTTGGAGACATGGTGGGAAAGGTAGCTCGCT
TCCTCTCGTGTTTTGTCGCGAGACCTTGTTCACTGAGCGTGTACTGACTC
CTCATGAAAAACATCGCTCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCGCTCCGCTTATATTTATCCCACTGCTTCTACCGGCCCATCC
CATGGTCGCTGGTCCTTCTTCTACGGGCTTGCGAATCAGGCGCGGCCGCC
ATGGGGAAGTGAGTACATCCCAGATACACAGCACCGCGCTCCGGTTGATG
GAGCACGCGCTCTGCGATAAGACATGCGCCAAGGGCTGCCATAGTCGTCA
GTTGAACGCTTTCCATATGCATAGCTCCACCGTTGGTCGATTGATTTCCT
TTTTGCCTGTGTGTCTCGCGATTTTCGTCCTCTGTTCGCGCCTCTCGTTG
CTGGTGGCACATTTTGACCCCTTCGCTCCGCACTATGATGTACAGGAGAA
CGCTGGCCCAGCAGTTATTGCAGCCGAACAAACGAGCCCGCGGCGGCAAG
AGGCGTCGGAAGTCCAGTGGTGCCCCCTCCAAGGTGCTGTTACCGCTGTG
TAGATCAACAGGCTAATTGTTTTGTGTGCAACAGCAGTCGAGATGCACAC
GGTAGTGAGGTCGTGAAATTTTTTAGGAAAATACATGGCGATACACACAT
AGAAAGAGGGTTCCTGTTCGAGATATGACCACGGCAGTCCAAGAGGATAC
GTGAAAGGCTTGAAGCTTGTGGTAGTTAGGAGGATGCCGTGAGTCTGCGA
AAGGAGGGTTCGGGTTCTCCTGGAGTTCGACGAAAGTGCCATGAGATATT
TGTGAGGGACGGACAGTTTGGGCTGCCGGTGACAGCGAGATGCCCGGAGT
CCCGTAAGCAGCAGAGCAGAGGCTCCAGAACAGGGCAGTTTTGCACCACA
AATTGCACATAGAGCCGACTTGATGGCACACGTATATCTATCAGCCGACA
GTCTCAGTATGGACGCCCGTCAAGGATAACAGTAACAACGACAGGAAGAC
GATGGAACCTCCCGTTCGTCTGGTCCCAGCATAATGCACAGGCAGCACCT
TAAGAGTGCCTGACCGCAACCAAGCGAAACCTGTCAAAACGAAAACATCA
CCCACTCCGATGACCTTGCCCGACTGCTTTGCACTGGTGTCCAGCTCGAC
AATTAACTTGACCCCACCCCCTGCCCCACCCCATCCTCCATCGTAAAACT
CCCGCACGATGGTGGCGTGCCTTGTTGACCTGGGGAATTCGATTGATGAA
TGGACGGCTCGCAGCCGGGGTCGTCGGAGACTGCCGTGATCCAAGCGGAA
TACGCCGCCGTAGACGCCCGCGAGAAGGCTAAGGAGGACTCGGAATACGC
GAGACGTGTGCGCCCTGTGAGGATCAGGCTCGCGCCTTCGACGACGGAGC
TGCGCATGCCGAGCGAAGGGTGAGCCACACGTCACGAAGGACGTTGGTCC
GCAGCACGCACCTGGAGATGAACGGTTTCGTAGTTATCGTCGGCGGCGGT
AGTGTGCTGGCCGGGCTTGCTTTGCGACAGGCTTGGACATGTTGTGAATT
TGGCGGGGTGTCTGACCTGCGATGAAGAAGACCACCATGTTCAAGAAAGA
GAACCTTCCGGTCTCGATGATCGTAACTACGCACCCAAACACCGTTAGGC
GTATTGTTGACACTCGACTGCTTTTGCTATTCATCAACGTTCCCCGCGGG
GCATGTAAGCTTGAATCAGGGTAACAGCCATCTTCCTTCCATAGAATGCG
CTATGCATCGCAGCCCACGCGTAAGGTCCTTTCTGTCATCACCGCCCACG
CTTGATGTTGTGATGGTTCAAATTCGGCAACCTGATTCGCCGACTTTTAC
CCCCACGCGCTCCTGCTTCTTGTGGACGGCATGTTATCACCATCAACAGC
GAGGTGTCCATGGCGTCGCTCCGTGCGTCGAGCTCCGCTCGCATGGTCGA
AGCTCTTCTGCAGAGCATCACTGACGAACCGGTGAGCTCCAAGCCGCGTA
GTGTGCGTCGTACACATGTAGTTGCAAGAGCTCATTGGACGCTTGTGGTA
TATCGTACATCAGCAGCGTGTGCAGCTCAGAATCCGCAAATTTCCTCCGT
TGCCCCCCCGCCCCCACGCAACCACACCGTCCCCGTTGTTTGCTAGATCA
ATGTTGTAACGCTCTCTCTCTCCTTTTCCACTCGAACCCATAAGTTCAGT
GTCCCCGCTTTGTTGTTATTGCGGTCTGGCAAGTAAATGTTAGCCACGAC
TCCCTTACCCCCGCCACTCAAGCCTCGGTACTTGCCCGTTGCAGCAACCC
AACGCCCATTTCCCCCATCTCACCTTTGTTTTCTTTTTTTCTTGCCTCGT
CTCTGAATGTAATAACTTGATACTGGTATCTACACCGCCGGACAACTCGG
CCTTGGCGTTTATTCTAGGCGCCGGACGCGCCGCCGTCTCGACCCGTTCG
TTCGGCCGGCCGCAAGCGCAAGGGAAACCCGTTCGCGGCCTTGGGAGACG
ACGGTTCCGATTCCGATTCCGACTCCGGGTCCTGGGGCGCAGCGGGAGGC
CGCGTTGGCATCATCTCGAACGGTCGAACGTCGAGCTCGAAGCCTGACCA
GAGAACGGGGGGACTGTTCACGAACAGCACCGGTCGCGCGTTCGGCAGCG
GCCCGCCAGCAGAGGAGGGAGGCGGTCTCATGGCGTTCGCGTCTCCATCG
AGCTTCGCCGGATTTTCTGGCACCGGGGGCGGCGCGGGGGCGGGGCGGAT
GGGATCGGTGGGGTTCGGAGGGTCGAAAGGGGGTGCGCTTGCTGGTGCTG
CTGCCGCGGTGGCGACGATGGGAGGAGGCCCCCAACCCGCCGCTTCAGCA
GCAGCAGCAAGTGTAGGTAGTGGTGCCGGAAATGCCGATGACGATGATGA
TCCCGACTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig867:7638..11150+

>mRNA_Ecto-sp13_S_contig867.20117.1 ID=mRNA_Ecto-sp13_S_contig867.20117.1|Name=mRNA_Ecto-sp13_S_contig867.20117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:7638..11150+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAAAGCCAACAGAGGAGGACAGAAGCGAAAGGAAGCCCCTGCGCG
GAAGCAGCTGCAGGGAAGGGGCGGAAACAGCGGATTGCTACACAAAAACA
ACCAAAAACATGGGGCTCATCGTGAAGGGTTGGACGGCGCGGCCGCCATG
GGGAAGAGAACGCTGGCCCAGCAGTTATTGCAGCCGAACAAACGAGCCCG
CGGCGGCAAGAGGCGTCGGAAGTCCAGTGGTGCCCCCTCCAAGCCGGGGT
CGTCGGAGACTGCCGTGATCCAAGCGGAATACGCCGCCGTAGACGCCCGC
GAGAAGGCTAAGGAGGACTCGGAATACGCGAGACGTGTGCGCCCTGTGAG
GATCAGGCTCGCGCCTTCGACGACGGAGCTGCGCATGCCGAGCGAAGGCG
AGGTGTCCATGGCGTCGCTCCGTGCGTCGAGCTCCGCTCGCATGGTCGAA
GCTCTTCTGCAGAGCATCACTGACGAACCGGCGCCGGACGCGCCGCCGTC
TCGACCCGTTCGTTCGGCCGGCCGCAAGCGCAAGGGAAACCCGTTCGCGG
CCTTGGGAGACGACGGTTCCGATTCCGATTCCGACTCCGGGTCCTGGGGC
GCAGCGGGAGGCCGCGTTGGCATCATCTCGAACGGTCGAACGTCGAGCTC
GAAGCCTGACCAGAGAACGGGGGGACTGTTCACGAACAGCACCGGTCGCG
CGTTCGGCAGCGGCCCGCCAGCAGAGGAGGGAGGCGGTCTCATGGCGTTC
GCGTCTCCATCGAGCTTCGCCGGATTTTCTGGCACCGGGGGCGGCGCGGG
GGCGGGGCGGATGGGATCGGTGGGGTTCGGAGGGTCGAAAGGGGGTGCGC
TTGCTGGTGCTGCTGCCGCGGTGGCGACGATGGGAGGAGGCCCCCAACCC
GCCGCTTCAGCAGCAGCAGCAAGTGTAGGTAGTGGTGCCGGAAATGCCGA
TGACGATGATGATCCCGACTTGTGA
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