mRNA_Ecto-sp13_S_contig867.20115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig867.20115.1
Unique NamemRNA_Ecto-sp13_S_contig867.20115.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: D7G3W0_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W0_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 2.590e-171
Identity = 252/262 (96.18%), Postives = 258/262 (98.47%), Query Frame = 2 
Query:    2 VGLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLEGKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLRLADGGKKGSCRTVNEPTARKLVALFTDKPQS 787
            VGLEMQVARLQTGDFAWAWRRRRSG+RGTDLLTG SEE+LLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGL+RLIYLLEGKLEGHVAYKSSVDK+KTMRTME DTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTV MEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKL+LADGGKKGSCRTVNEPTARKLVALF DKPQ+
Sbjct:  155 VGLEMQVARLQTGDFAWAWRRRRSGSRGTDLLTGPSEELLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLSRLIYLLEGKLEGHVAYKSSVDKTKTMRTMETDTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVTMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLKLADGGKKGSCRTVNEPTARKLVALFADKPQA 416
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A6H5K3W4_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W4_9PHAE)

HSP 1 Score: 471 bits (1213), Expect = 7.220e-162
Identity = 240/262 (91.60%), Postives = 254/262 (96.95%), Query Frame = 2 
Query:    2 VGLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLEGKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLRLADGGKKGSCRTVNEPTARKLVALFTDKPQS 787
            VGLEM+VARLQTGDFAWAWRRRRSG RGT+LLTGSSEEVLLLDCLVERKKEDD+INSVEGLAGR+ AQKRRMSL GL+RLIYLLEGKLEGHVAYKSSVDKSKTMRTME DTLAEGFAIKRVDNVE TAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAM+PKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTP+RFI+ALR+C+SPEEQ+SL  +L+LADGGKKGSCRTVNEPTARKLVALF DKPQ+
Sbjct:   24 VGLEMRVARLQTGDFAWAWRRRRSGVRGTNLLTGSSEEVLLLDCLVERKKEDDMINSVEGLAGRHLAQKRRMSLRGLSRLIYLLEGKLEGHVAYKSSVDKSKTMRTMETDTLAEGFAIKRVDNVEGTAAFLLSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMEPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPVRFIQALRKCNSPEEQESL--QLKLADGGKKGSCRTVNEPTARKLVALFADKPQA 283
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A3B4U4H9_SERDU (MUS81 structure-specific endonuclease subunit n=5 Tax=Carangaria TaxID=1489904 RepID=A0A3B4U4H9_SERDU)

HSP 1 Score: 109 bits (272), Expect = 2.040e-21
Identity = 75/248 (30.24%), Postives = 123/248 (49.60%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSL----------------SLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L   +   L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R +YL+E  G    H++   +  +   + T   D    GF +KRV +V E+AA+L  +                S QL   +G++  +E    PS   +SF E++      + +  TV   FAR L+ ++G+S + A  I  ++ TP   + A  QC+S  E++ L+  +R
Sbjct:  360 GVNFDVRKLNVGDFLWVAREKMAPVPGQ--LRAPAGRELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLRRPVYLVEECGTAASHLSLPEATLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQNRTLICRSRQLEGDEGSD--EEERGIPSCALISFAEFNYGAVKNKCQ--TVREVFARQLMQISGLSGDKAAAILEQYSTPHSLLAAYEQCASEAEKEKLLSSIR 595
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: UPI0014900039 (crossover junction endonuclease MUS81 n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI0014900039)

HSP 1 Score: 109 bits (272), Expect = 2.040e-21
Identity = 74/246 (30.08%), Postives = 122/246 (49.59%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETI--------------QEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L   +   L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R IYL+E  GK   H++   +  +   + T   D    GF +KRV +V E+AA+L  ++  L       T+              +E   NPS   +SF E++      + +  TV   FAR L+ ++G+S + A  +  ++ TP   + A  +C+S  E++ L+  +R
Sbjct:  360 GVSFDVRKLNVGDFLWVAREKVAPVPGQ--LRAPAGRELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLHRPIYLVEECGKAASHMSLPETTLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQNRTLICRSRELEGDTGSDEEGGGNPSCSLISFAEFNHGAVKNKCQ--TVKEVFARQLMQISGLSGDKAAAVLEQYSTPHSLLTAYDRCASEAEKEKLLSSIR 595
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: UPI0015E1BBF5 (crossover junction endonuclease MUS81 n=1 Tax=Morone saxatilis TaxID=34816 RepID=UPI0015E1BBF5)

HSP 1 Score: 107 bits (267), Expect = 2.070e-21
Identity = 77/247 (31.17%), Postives = 119/247 (48.18%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQL---------------MASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L       L+LD ++ERK+ DD+  S+  + GR R QK R+  CGL R IYL+E  GK   H++   S  +   + T   D    GF +KRV +V E+AA+L  ++  L               +   G  + +E    PS   +SF E++      + +  TV   FAR L+ V+G+S + A  I   + TP   + A  QC+S  E++ L+  +R
Sbjct:  147 GVNFDVRKLNVGDFLWVAREKVAPVPGQ--LRAPVGRELVLDYVIERKRMDDLCGSI--IDGRCREQKFRLKRCGLRRPIYLVEECGKAASHLSLPESTLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQNCTLICRSRELEGDGGGSDEEERGTPSCSLISFQEFNHGAVKNKCQ--TVREVFARQLMQVSGLSGDKAAAILELYSTPHSLLAAYEQCASEAEKEKLLSSIR 383
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A6P7I3J4_9TELE (crossover junction endonuclease MUS81 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7I3J4_9TELE)

HSP 1 Score: 109 bits (272), Expect = 2.120e-21
Identity = 76/247 (30.77%), Postives = 124/247 (50.20%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETI--------------QEYCSNPSRPKVSFGEWS-TAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   + +L  GDF W  R + +   G   L       L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R IYL+E  G    H++   +  +   + T   D    GF +KRV +V E+AA+L  ++  L       T+              +E   +PS   +SF E++ +A+K K    +TV   FAR L+ ++G+S + A  I  ++ TP   + A  QC+S  E++ L+  +R
Sbjct:  373 GVSFDIRKLNVGDFLWVAREKMAPVPGQ--LRAPEGRELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLRRPIYLVEECGTAASHLSLPETTLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQGRTLVCRSRELEGDGGSEEEDRGSPSGALISFAEFNYSAVKNKC---QTVREVFARQLMQISGLSGDKAAAILEQYSTPHSLLTAYGQCASEAEKEKLLSSIR 608
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BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: M4A614_XIPMA (ERCC4 domain-containing protein n=18 Tax=Poeciliinae TaxID=586240 RepID=M4A614_XIPMA)

HSP 1 Score: 108 bits (271), Expect = 2.670e-21
Identity = 73/244 (29.92%), Postives = 121/244 (49.59%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLEGKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETI--------------QEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L   +   L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R IYL+EG      A   S+ ++   + +    + +GF +KRV +V E+AA+L  ++  L      +T+              +E   NPS   +SF E++      + +  TV   FAR L+ ++G+S   A  I  ++ TP   + A  +C S  E++ L+  +R
Sbjct:  355 GVGFDVRKLNVGDFLWVAREKVAPVPGR--LRAPAARELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLRRPIYLVEGSSSS--AAHLSLPEATLQQAIVNTQVLDGFFVKRVQDVRESAAYLTVMTRYLSKLYQNQTLVCRSRELEGDVPSDEEESGNPSCSLISFAEFNHGAVKNKCQ--TVREVFARQLMQISGLSGHKAAAILEQYGTPHSLLAAYEKCGSESEKEKLLSCIR 590
[Close]
BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A4W6CFE8_LATCA (MUS81 structure-specific endonuclease subunit n=7 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CFE8_LATCA)

HSP 1 Score: 108 bits (271), Expect = 2.720e-21
Identity = 76/248 (30.65%), Postives = 121/248 (48.79%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFL----------------LSLSLQLMASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L       L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R +YL+E  G    H++   +  +   + T   D    GF +KRV +V E+AA+L                L  S +L   +G+   +E   NPS   +SF E++      + +  TV   FAR L+ ++G+S + A  I  ++ TP   + A  QC S  E++ L+  +R
Sbjct:  360 GVNFDVRKLNVGDFLWVAREKVAPVPGQ--LRAPVARELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLRRPVYLVEECGTAASHLSLPETTLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQNRALLCRSRELEGDEGSG--EEERGNPSCSLISFAEFNHGAVKNKCQ--TVREVFARQLMQISGLSGDKAAAILEQYSTPHSLLSAYEQCRSEAEKEKLLSSIR 595
[Close]
BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A3B5M007_9TELE (MUS81 structure-specific endonuclease subunit n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5M007_9TELE)

HSP 1 Score: 108 bits (269), Expect = 3.380e-21
Identity = 73/244 (29.92%), Postives = 121/244 (49.59%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLEGKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETI--------------QEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L   +   L+LD ++ERK+ DD+  S+  + GR+R QK R+  CGL R IYL+EG      A   S+ ++   + +    + +GF +KRV +V E+AA+L  ++  L      +T+              +E   NPS   +SF E++      + +  TV   FAR L+ ++G+S   A  I  ++ TP   + A  +C S  E++ L+  +R
Sbjct:  276 GVGFDVRKLNVGDFLWVAREKVAPVPGQ--LRAPAARELVLDYIIERKRMDDLCGSI--IDGRFREQKFRLKRCGLRRPIYLVEGSSSS--AAHLSLPEATLQQAIVNTQVLDGFFVKRVQDVRESAAYLTVMTRYLSKLYQNQTLVCRSRELEGDVPSDEEERGNPSCSLISFAEFNHGAVKNKCQ--TVREVFARQLMQISGLSGHKAAAILEQYGTPHSLLAAYEKCGSESEKEKLLSCIR 511
[Close]
BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Match: A0A8C4NQM8_DICLA (MUS81 structure-specific endonuclease subunit n=2 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4NQM8_DICLA)

HSP 1 Score: 108 bits (269), Expect = 4.680e-21
Identity = 76/247 (30.77%), Postives = 120/247 (48.58%), Query Frame = 2 
Query:    5 GLEMQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDIINSVEGLAGRYRAQKRRMSLCGLTRLIYLLE--GKLEGHVAYKSSVDKSKTMRTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQL---------------MASQGAETIQEYCSNPSRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREFPTPMRFIEALRQCSSPEEQKSLVQKLR 694
            G+   V +L  GDF W  R + +   G   L     + L+LD ++ERK+ DD+  S+  + GR R QK R+  CGL R +YL+E  GK   H++   S  +   + T   D    GF +KRV +V E+AA+L  ++  L               +   G  + +E    PS   +SF E++      + +  TV   FAR L+ V+G+S + A  I   + TP   + A  QC+S  E++ L+  +R
Sbjct:  350 GVNFDVRKLNVGDFLWVAREKVTPVPGQ--LRAPEGKELVLDYIIERKRMDDLCGSI--IDGRCREQKFRLKRCGLRRPVYLVEECGKAASHLSLPESTLQQAIVNTQVVD----GFFVKRVQDVRESAAYLTVMTRYLTKLYQNCTLICRSRELEGDGGGSDEEERGTPSCSLISFQEFNHGAIKNKCQ--TVREVFARQLMQVSGLSGDKAAAILELYSTPHSLLAAYEQCASEAEKEKLLSSIR 586
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig867.20115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3W0_ECTSI2.590e-17196.18ERCC4 domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K3W4_9PHAE7.220e-16291.60ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A3B4U4H9_SERDU2.040e-2130.24MUS81 structure-specific endonuclease subunit n=5 ... [more]
UPI00149000392.040e-2130.08crossover junction endonuclease MUS81 n=1 Tax=Noto... [more]
UPI0015E1BBF52.070e-2131.17crossover junction endonuclease MUS81 n=1 Tax=Moro... [more]
A0A6P7I3J4_9TELE2.120e-2130.77crossover junction endonuclease MUS81 n=1 Tax=Para... [more]
M4A614_XIPMA2.670e-2129.92ERCC4 domain-containing protein n=18 Tax=Poeciliin... [more]
A0A4W6CFE8_LATCA2.720e-2130.65MUS81 structure-specific endonuclease subunit n=7 ... [more]
A0A3B5M007_9TELE3.380e-2129.92MUS81 structure-specific endonuclease subunit n=2 ... [more]
A0A8C4NQM8_DICLA4.680e-2130.77MUS81 structure-specific endonuclease subunit n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig867contigEcto-sp13_S_contig867:2..5352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score495.4
Seed ortholog evalue1.7e-137
Seed eggNOG ortholog2880.D7G3W0
Preferred nameMus81
Model size1725
KEGG koko:K08991
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047
Exons7
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG2379@2759
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-01_005900.1
Cds size777
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig867.20115.1prot_Ecto-sp13_S_contig867.20115.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig867 15..4417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.0470674-UTR-Ecto-sp13_S_contig867:1..141681464139.0470674-UTR-Ecto-sp13_S_contig867:1..14Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig867 2..14 +
1681464139.1369376-UTR-Ecto-sp13_S_contig867:4417..53521681464139.1369376-UTR-Ecto-sp13_S_contig867:4417..5352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig867 4418..5352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.0612998-CDS-Ecto-sp13_S_contig867:14..351681464139.0612998-CDS-Ecto-sp13_S_contig867:14..35Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 15..35 +
1681464139.0706975-CDS-Ecto-sp13_S_contig867:548..6921681464139.0706975-CDS-Ecto-sp13_S_contig867:548..692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 549..692 +
1681464139.08035-CDS-Ecto-sp13_S_contig867:1458..16231681464139.08035-CDS-Ecto-sp13_S_contig867:1458..1623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 1459..1623 +
1681464139.0905018-CDS-Ecto-sp13_S_contig867:1913..19821681464139.0905018-CDS-Ecto-sp13_S_contig867:1913..1982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 1914..1982 +
1681464139.1010509-CDS-Ecto-sp13_S_contig867:3068..32211681464139.1010509-CDS-Ecto-sp13_S_contig867:3068..3221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 3069..3221 +
1681464139.1116035-CDS-Ecto-sp13_S_contig867:3582..37021681464139.1116035-CDS-Ecto-sp13_S_contig867:3582..3702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 3583..3702 +
1681464139.12429-CDS-Ecto-sp13_S_contig867:4312..44171681464139.12429-CDS-Ecto-sp13_S_contig867:4312..4417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 4313..4417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig867.20115.1

>prot_Ecto-sp13_S_contig867.20115.1 ID=prot_Ecto-sp13_S_contig867.20115.1|Name=mRNA_Ecto-sp13_S_contig867.20115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MQVARLQTGDFAWAWRRRRSGARGTDLLTGSSEEVLLLDCLVERKKEDDI
INSVEGLAGRYRAQKRRMSLCGLTRLIYLLEGKLEGHVAYKSSVDKSKTM
RTMEADTLAEGFAIKRVDNVEETAAFLLSLSLQLMASQGAETIQEYCSNP
SRPKVSFGEWSTAMKPKRLEPRTVMMEFARCLLMVNGVSAEGARVIAREF
PTPMRFIEALRQCSSPEEQKSLVQKLRLADGGKKGSCRTVNEPTARKLVA
LFTDKPQS*
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mRNA from alignment at Ecto-sp13_S_contig867:2..5352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig867.20115.1 ID=mRNA_Ecto-sp13_S_contig867.20115.1|Name=mRNA_Ecto-sp13_S_contig867.20115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:2..5352+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCGGCCTGGAGATGCAAGTCGCTCGTTTGCAGGTAGATGGAAGAGTGC
AAACGGAGAGATTGTTAGCGAAACATGGCTTGGAGATTGTAAGCGAAAAA
CGTTTTTGAGTGTGATGATAATCTCTTCCTGCTGCTGGCGTTCGCTGTTT
GGTTGTACGTAAGGGAGCGGAGGGGGGGGGGTCAATTGTCCAAGCGTGGC
CCCTGCCTCCAGGCGCACACGATAGCTTGTGGGGTTCGTTGTTTGGAGTT
CGACTGAGCGTGCTAGTGACGTGCACCACATGCACCTTTTCCGAGGAAAT
CAACCATGGCAGACGGGTAGCCGCAAGGATGTTTTGCTGGCGCGTCCTTT
TTCGGCTGTCCGATGACGATCCAGATTGCTGCCATCATCACACCGTAGCC
GTTTATATTATTTCATGTTTGCGTTTTCCACCATCTGATTTAAATCCTCT
GTTTGTCGCTCTCTCTCTCTCTCTCCTCTCTCTCTCCTCTCTCTCGTCCT
CGCATTTGTCTGTTGCTTCGAATTAACAACGAAATTGTTTGTACTAGACG
GGAGACTTCGCGTGGGCGTGGAGGAGAAGGAGGAGCGGTGCCCGCGGCAC
CGATTTGCTGACGGGGTCATCGGAAGAGGTGCTGCTGCTAGACTGCCTCG
TGGAGAGGAAGAAGGAAGACGACATCATCAACAGTGTCGAGGTACATCAG
GCGTGGGGGAAGCGTGCTGCAGTAGGGCATTTTTCTTGAGGCCTGGGGCG
GAGACATGTCTCGAGGGCGTGGGCGCTTACGCATATATATTCGTGCAGAA
AGCACCCTCACCAAAAAGATCCTGATTTTCGCACAAGCTGGGGTTCTAAC
TTCTTCAAGGTTTTTGTGCAGGGGTTCTCAACCGAGCTCACAAACGTTGC
TCAAGTTCTTCAATTTTGATTTCTTCCAGACTAAAACCATTTTGAGTTGG
CAGCCTGTTTATTATCTGCCGAGTTATTTCTTACGTGTGGGCGCTTTACT
GTCTGTTGTCTTCTCTTCTTACTCTTTGTCGTGGCGTTTGCCGTAGACGT
CGTTTTTTTTTCACACTTTTTCGGTACATCATTTCTGCACGTACCAGCCG
GAGTCACACGCGAGGGAGGGAGGCCACACAGGAGTGCTCCGCCTTCCTTC
CTTCCTTCCCTCCTTCCTTCCTCCTTCCTTTCTTTTCCGGTGCTTGCCTT
CGTGCTTATCGCGTTTCTTTCCCTCATCCCAAAACGTCAAGAAGGTTGCG
AGGTTACCTATTGAACCATTCATCGAACCACCGAGGTGCAAGCACTGCTG
TCTGTCCTATGTAGCATTTGTTTCACAACATACGGCTTGCGTTTCTTTTG
TCTGTTGAGCCGGCGGAAAAAACGAGTACTGGATCCGTTCATGTTGGATT
TTTGGATTGTTTGATCCGGACTGAACGGTCGATCGGCTGGCCCTTGGATG
ACTTCAGGGCTTGGCCGGGAGATACCGCGCGCAGAAGCGGCGCATGTCCC
TGTGCGGGCTGACCCGGCTCATTTATCTGCTGGAGGGGAAGCTTGAAGGG
CACGTCGCGTACAAGTCGTCTGTTGACAAGAGCAAGACGATGCGCACGAT
GGAGGCGGACACTCTCGCTGAGGTATCTAGGTTGCCTGAAAGATTGCACC
ACTCAGAACTGCTGCTGCTGATGATGATGATAATGATGTTGATGTTGATG
CACGCAGCTTCTCGTTGTCGTCACTACTTGTATCTGTTGGTGGTCTTGTT
TCGTGGTTGTTGATGCTGTGACGTCGGTCGCCGTTCCGTGGCTTTGCTGC
TACATACTACTGTCACCTTGTTGGCATCCGGTACGCGAAAGCATGGAAGT
GCATGCCAATCCTTTGCCTCGGTTGCTGTGTCTCCCTATGGCTCTCTTGC
CTGTTTGTCCAGGGCTTCGCGATCAAGAGGGTGGACAACGTGGAAGAAAC
GGCTGCTTTCCTTCTGTCGCTCTCCCTTCAGGTACCCCTCCCTTCCAGCC
AACCCAATGGCATAACTCGATCAACGCAGCACACGCAAGGATGATGGCCA
GCTTCTGGTTCTACCTTTTGAAACGTAGCCTGGGCCGGCGAAAACCCGGC
ACTTCCCTTCGTCCCGGCATTGTAGGGATGCGTGGTCTATGGTCCAACAG
CCACGGAATGTGTTTATATGAATACCCCGCACCCCCTCTCGGCATGCGCC
GCCCTCTCGAGGACACGTTGTCAAGTCTAACCGCTTAGGCATGTAAAATA
CAAGAGTACACCCCCCCAACCCCTTCACATGCACACCCCGTGTGTATGTA
CATCAACCTCACGTTTCCTGTGAGATGGTGTGAGTCTCCTATCATCGCCT
TTCCCTTCCTGCCCCTTGTTTACTGTTGGCGATGCATTTTGCGCAGTACC
CGCCGAGAGGAATCATGCCCAAAACGTGTATAAGGTCGCAGTCGGGGCCA
GGGGAAGAAGCATGTTATCCTTGTTTGAATGTCAATGTTGATATAGGACT
TTTGGTTGCCATCCCCGCGCTAGGCAATGGATTTTCATTCCTGACGGGGC
CCCGTGTGCTATTTCCGACAGTCATCCGATTTCGATGAGAGCACAAGAAA
TGGGGGAGGGGGTCTAGACGACGTTTGGTAACGTGCTCCTCCTCGCTGCG
ATTGCCGTACGAAAGAAGGGGGCAAGAATCTTGAAGATTGAACACGTTAG
GGGAGGAGCGTTCAGAATCCCAACAAACACGCCAACCCAACCGGCGGAGT
CGATGGCTATGTCTAAAGTAGTCACACACATACCCCAANNNNNNNNNNCC
CCTCGCCGGCAATTCCGGTAAAAAAGAAGGGGGAAAAAATTTTAAAAATT
AAAAACGTTAGGGGGGGGGCGTTCAACCCCCCCCCCCCCCCCCCCCCGGA
ATTTTGGCGCAGTGTTTACGTTGTGTAGCAACAGGAACGGTGCTCCCTCC
TGCTCCGCTCTCAAAAGGGATGACGTCGCCATGGTCAATTGTACGATGGC
CAAGGAAAGCATGCGTCAGTATCCTCCTCGCGTGCTTGCCGTCGTGTCGT
GCCTTGTTTTTTCGCAGTTGATGGCGAGCCAGGGCGCCGAAACAATCCAA
GAGTACTGCTCCAACCCTTCCCGCCCCAAGGTGTCGTTTGGGGAGTGGAG
CACGGCCATGAAACCCAAGAGGCTAGAACCGCGCACCGTGATGATGGAGT
TCGCGAGGTGCCTTCTCATGGTACGCACATATCTATACGTCATGCAGCAG
CGTTTATTAGTTGTGGATGCCTTTGTGTTGCTTGATGTATAGTAGTGTTT
GTGTGTTGCTGTATTTCAAACTCTCATCATAGGTTTGTGACTTCGAATCG
CGGCGCACTTTCATAGAATGGGATTGAGTAGAGACGCAACAGGTATTTAG
TGCTTCCCCCCGAACCACTTCCAACCCCTCGCAAGTTGACTGACACATGT
ATTCTGCATGTGCACATCTCCCTGAAAAACAGACGTCGTCCTTTGATAGT
AATGGCCACCTCGAGTGAACTCTTGCCCCCCCGCCCCCTTGTCCTCGTAA
CTGCACCCCCCCTCCCCCCCCCTTCCCGTAGGTGAACGGCGTTAGCGCGG
AGGGGGCGAGGGTGATCGCTCGCGAGTTCCCCACGCCTATGAGGTTCATC
GAGGCCCTGCGGCAGTGCAGCTCCCCGGAAGAGCAGAAAAGCCTTGTGCA
GGCACGTTTTTTTTTTCTTCTATAGTCATGCTACGAGACCTGGTATCTCT
GACCGCTGCTGTCTGTTTTCTCCCACACGGAAAATACTGCTCCTCTTTCG
AAACTACCTTTATGTGTTACTGGGTCTCGCTTTAAGTTGCTGCTCCGTAT
TCCTTGACGTTACGCGCGTCTCATCGTGTCCATGACACATGTGTGCATCA
CGGTGCACCTAAATGTGCGCGATCGATTGCACAATTGTTTTGTAGTACGG
CACGATGATGGGGAGCGTGTTCGATGTTTGGCTTTCACGGAACGTGTGTT
GTTTGCGTATCACGTGGTATGTATCATTTCATTTCATTTTCGAAAGATGG
CGCCCCGTCGTCCAAATCAGGCAGACAACAACCAACACAAGAATACACCG
TTGAGTTGAGTTGCGGTTGGTTCGATTGCGACGTTCTCATGCGCCCCTTT
TGGCTAGACGCGACAATATTATTGTAGTCCCGGCGCAACAAAAAGTAACC
CCTATAGCCACGGCCACCTCCGCCTCCGCCTCGTCGTGTTGGACGTTAAC
GTCGCCATCGTTCTGCCCTTTCTTTTTTGTTCCTGCCTAACTTTTTTGTC
TGACCGCGTAGAAGCTCAGGCTTGCTGATGGCGGGAAGAAAGGCAGCTGT
AGGACCGTCAACGAGCCGACCGCCCGCAAGTTGGTAGCCCTCTTCACCGA
CAAGCCTCAATCCTGAGCTAAAAACGGTGCCATGCCACTTGATGGGGGAG
TGCCGCTGCGAGGGAGCACGGAATACGTGATGCACAGTTTGGAAGTATTT
TTTTTTTAGGATGTAAGCGGGCGCGGGATTTAAAACTTGAGGTTGACGTG
TGGAGGAATACGACCTCCGTGTTCATTTCGTGAGGTTCCACACCATATCA
TAATGGAAGGCAAGCGCCCCGCAGGAGGGATAGACAAGTATCGGAACTCC
TATCCGGCAGAACTGCTCTGCTTGACGGCAGCGCTGTTTTAACTTCAGTG
TCCAAAATAAATAAATACATTTATATATCATCTGTAGGTGTACTGTAAGC
CACGTTACGGAACCGGTTGCTCGCGAAGGTGGAGGTATATGTTCTTGTGC
ATCACCGGGTTGGTGTGTTTCTTCCTTTCGTGGCGTTACTGTAAGAACGA
GGAGCAAACAAAAAGTGCCAGGAGGAAGCGGGGAACAAAAAATTGCGGTT
GAGTTCGTTTGCGTGTGAGCGTGGTTTTTAAAGTGTTCCAGATGCTCTTG
TTCTCGGGCGAGACCCTTAAGGTTGCGTATGGGAGGGATGAATCCTTGCG
AAAATTTCGATTGGCACGTTTTTATTCTTACCCTTGTGCGTCATGTCCGC
CAGACACCGGGTTTCCAGATTAACCACATGACCCCGGGGGCTGTAGGTTG
GGCGATGCAATATATTTCGATGGCTGCGTTGAAAGTAAGGGGCTTCGTGG
GACCGTTCCAATGACAATGACAATGTTCTCCATCTCGGGGATCGCTACGG
CAGGAAGACACCGCAAAAGGGCTTTGCACAAAAGGTAGGGTGGTTTCTGC
CGTTGTTACAGCCACAACGCCGCGCTTGTACTTGTCAGTTACGCGGAGAA
ACGCTCGATCGCACATGCGGAGCGGGACGTTGGGTAATGAGGCTCACAAT
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig867:2..5352+

>mRNA_Ecto-sp13_S_contig867.20115.1 ID=mRNA_Ecto-sp13_S_contig867.20115.1|Name=mRNA_Ecto-sp13_S_contig867.20115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:2..5352+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGTCGCTCGTTTGCAGACGGGAGACTTCGCGTGGGCGTGGAGGAG
AAGGAGGAGCGGTGCCCGCGGCACCGATTTGCTGACGGGGTCATCGGAAG
AGGTGCTGCTGCTAGACTGCCTCGTGGAGAGGAAGAAGGAAGACGACATC
ATCAACAGTGTCGAGGGCTTGGCCGGGAGATACCGCGCGCAGAAGCGGCG
CATGTCCCTGTGCGGGCTGACCCGGCTCATTTATCTGCTGGAGGGGAAGC
TTGAAGGGCACGTCGCGTACAAGTCGTCTGTTGACAAGAGCAAGACGATG
CGCACGATGGAGGCGGACACTCTCGCTGAGGGCTTCGCGATCAAGAGGGT
GGACAACGTGGAAGAAACGGCTGCTTTCCTTCTGTCGCTCTCCCTTCAGT
TGATGGCGAGCCAGGGCGCCGAAACAATCCAAGAGTACTGCTCCAACCCT
TCCCGCCCCAAGGTGTCGTTTGGGGAGTGGAGCACGGCCATGAAACCCAA
GAGGCTAGAACCGCGCACCGTGATGATGGAGTTCGCGAGGTGCCTTCTCA
TGGTGAACGGCGTTAGCGCGGAGGGGGCGAGGGTGATCGCTCGCGAGTTC
CCCACGCCTATGAGGTTCATCGAGGCCCTGCGGCAGTGCAGCTCCCCGGA
AGAGCAGAAAAGCCTTGTGCAGAAGCTCAGGCTTGCTGATGGCGGGAAGA
AAGGCAGCTGTAGGACCGTCAACGAGCCGACCGCCCGCAAGTTGGTAGCC
CTCTTCACCGACAAGCCTCAATCCTGA
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