mRNA_Ecto-sp13_S_contig86625.20108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86625.20108.1
Unique NamemRNA_Ecto-sp13_S_contig86625.20108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A6H5KRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.100e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE
Sbjct: 1070 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 1139
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: D8LSU0_ECTSI (Similar to helicase, lymphoid-specific isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.800e-37
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            +SMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE
Sbjct:  802 ESMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 871
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A7S2A6Z7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Z7_TRICV)

HSP 1 Score: 110 bits (276), Expect = 5.280e-29
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            DS+G  F RLDG TP++ER+ LID+F  DTSIPVFLLSTRAGG+GINLTAADT ILHD+DFNP ND QAE
Sbjct:   39 DSIGFRFLRLDGQTPIAERQGLIDEFNTDTSIPVFLLSTRAGGMGINLTAADTCILHDLDFNPFNDIQAE 108
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A7S3H645_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H645_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.000e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    7 MGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            + +T+ RLDGSTPV +R+ LID F  DTSIPVFLLST+AGGLGINLTAADTV+LHD+DFNPEND+QAE
Sbjct:  202 INLTYLRLDGSTPVKQRQDLIDTFNTDTSIPVFLLSTKAGGLGINLTAADTVVLHDLDFNPENDKQAE 269
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A7S2CCX4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCX4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.830e-26
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            + + + F RLDGSTPV+ER+ +I++F + T++ VFLLSTRAGGLGINLTAADTVILHD+DFNP +DRQAE
Sbjct:    4 EKLDLEFMRLDGSTPVAERQGMINEFNSSTTVNVFLLSTRAGGLGINLTAADTVILHDLDFNPIHDRQAE 73
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A7S1V6R1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6R1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.460e-26
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTS-IPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            +S+G+  CRLDG TP++ER+ LID F A+ S IPVFLLSTRAGGLGINLT+ADT ILHD+DFNP ND QAE
Sbjct:   39 ESLGLECCRLDGQTPINERQELIDAFNAENSTIPVFLLSTRAGGLGINLTSADTCILHDLDFNPFNDLQAE 109
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A482SY09_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY09_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 3.170e-26
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 DSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            + M + + RLDGST V ER+ LID F  DTSIPVFLLST+AGGLGINLT+ADTVILHD+DFNPEND+QAE
Sbjct:  556 EDMSLPYLRLDGSTAVKERQELIDTFNTDTSIPVFLLSTKAGGLGINLTSADTVILHDLDFNPENDKQAE 625
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A267EFE2_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EFE2_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 3.310e-26
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   19 FCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            F R+DGSTPV ER+AL+D+F  D+SIPVFLLSTRAGGLGINLTAADTVI+HD+DFNP ND+QAE
Sbjct: 1085 FLRVDGSTPVGERQALLDRFAEDSSIPVFLLSTRAGGLGINLTAADTVIIHDIDFNPYNDKQAE 1148
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A1I8GQ42_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GQ42_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 3.320e-26
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   19 FCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            F R+DGSTPV ER+AL+D+F  D+SIPVFLLSTRAGGLGINLTAADTVI+HD+DFNP ND+QAE
Sbjct: 1167 FLRVDGSTPVGERQALLDRFAEDSSIPVFLLSTRAGGLGINLTAADTVIIHDIDFNPYNDKQAE 1230
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BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Match: A0A1I8JF11_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JF11_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 3.330e-26
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   19 FCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAE 210
            F R+DGSTPV ER+AL+D+F  D+SIPVFLLSTRAGGLGINLTAADTVI+HD+DFNP ND+QAE
Sbjct: 2878 FLRVDGSTPVGERQALLDRFAEDSSIPVFLLSTRAGGLGINLTAADTVIIHDIDFNPYNDKQAE 2941
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86625.20108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRD4_9PHAE1.100e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU0_ECTSI3.800e-3798.57Similar to helicase, lymphoid-specific isoform 9 n... [more]
A0A7S2A6Z7_TRICV5.280e-2975.71Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3H645_9STRA9.000e-2876.47Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2CCX4_9STRA1.830e-2668.57Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A7S1V6R1_9STRA2.460e-2671.83Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A482SY09_9ARCH3.170e-2674.29DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A267EFE2_9PLAT3.310e-2679.69Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A1I8GQ42_9PLAT3.320e-2679.69Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
A0A1I8JF11_9PLAT3.330e-2679.69Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86625contigEcto-sp13_S_contig86625:36..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score139.0
Seed ortholog evalue8e-31
Seed eggNOG ortholog2880.D8LSU0
Preferred nameSMARCAD1
Model size210
KEGG koko:K14439
KEGG Pathwayko04550,map04550
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000122,GO:0000166,GO:0000183,GO:0000228,GO:0000729,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010225,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0016043,GO:0016363,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016575,GO:0016584,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030466,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031507,GO:0031934,GO:0031974,GO:0031981,GO:0032015,GO:0032017,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034399,GO:0034401,GO:0034641,GO:0034644,GO:0034724,GO:0034728,GO:0035601,GO:0035639,GO:0035861,GO:0036094,GO:0036211,GO:0040029,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046578,GO:0046579,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051057,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051304,GO:0051716,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070869,GO:0070870,GO:0070932,GO:0070933,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0097549,GO:0098687,GO:0098732,GO:0104004,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsKOG0389@1,KOG0389@2759
EC3.6.4.12
Cds size204
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.4372015-UTR-Ecto-sp13_S_contig86625:35..411681464138.4372015-UTR-Ecto-sp13_S_contig86625:35..41Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86625 36..41 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.4526627-CDS-Ecto-sp13_S_contig86625:41..2451681464138.4526627-CDS-Ecto-sp13_S_contig86625:41..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86625 42..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86625.20108.1prot_Ecto-sp13_S_contig86625.20108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86625 42..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86625.20108.1

>prot_Ecto-sp13_S_contig86625.20108.1 ID=prot_Ecto-sp13_S_contig86625.20108.1|Name=mRNA_Ecto-sp13_S_contig86625.20108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAAD
TVILHDVDFNPENDRQAE
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mRNA from alignment at Ecto-sp13_S_contig86625:36..245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86625.20108.1 ID=mRNA_Ecto-sp13_S_contig86625.20108.1|Name=mRNA_Ecto-sp13_S_contig86625.20108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86625:36..245+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGATGGGGATGACTTTCTGCCGCCTGGATGGCTCCACGCCGGTGTC
CGAGCGCAAGGCCCTGATCGACAAGTTCGGCGCCGACACGAGTATCCCCG
TGTTCCTCCTCAGCACGAGGGCGGGCGGGCTGGGCATCAACCTGACCGCT
GCGGACACGGTGATCTTGCACGACGTTGACTTCAACCCGGAGAACGATCG
CCAGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86625:36..245+

>mRNA_Ecto-sp13_S_contig86625.20108.1 ID=mRNA_Ecto-sp13_S_contig86625.20108.1|Name=mRNA_Ecto-sp13_S_contig86625.20108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86625:36..245+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGATGACTTTCTGCCGCCTGGATGGCTCCACGCCGGTGTCCGAGCG
CAAGGCCCTGATCGACAAGTTCGGCGCCGACACGAGTATCCCCGTGTTCC
TCCTCAGCACGAGGGCGGGCGGGCTGGGCATCAACCTGACCGCTGCGGAC
ACGGTGATCTTGCACGACGTTGACTTCAACCCGGAGAACGATCGCCAGGC
GGAG
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