mRNA_Ecto-sp13_S_contig10171.201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10171.201.1
Unique NamemRNA_Ecto-sp13_S_contig10171.201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Match: A0A6H5K584_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K584_9PHAE)

HSP 1 Score: 536 bits (1382), Expect = 8.840e-186
Identity = 283/306 (92.48%), Postives = 291/306 (95.10%), Query Frame = 3 
Query:  696 MAHRGTLSPRWQGATSSSSVRSRGADVPDEEKEILADPERSGPVHAIRARAPSSYGYIFLATLEGVLSASSFRSACAVSVPIISTFPLNNPAEEALISASASAFAVAGAVRSGAALALGTPFFLLAARCAIFALNRVRIPAVQRLQLQQPRLGFPLPAGVDEKVAVDLYVIGLAAAVLGGCVPALEMAGIFLGDSLKGRPPVWVVLAFLVLIPVIYLALGAWLDLSSPGEGFIARTRPTTAMCGLCAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAACEEDDMGASAHL 1613
            MAHRGTLSPRWQGATS+SS RSRGADVPDEEKEILADPERSGPVHAIRARAPSSY YIFLATLEGVLSASSFRSA AVSVPIIS FPL+NPAEEALISASASAFAVA AVRSGAALALGTPFFLLAARCAI AL+RVRIPAVQRLQLQQPRLGFPLP GVDE VAVDLY+IGLAAAVLGGCVPALEMAGI LG SLKGR PVWVV AF+VLIPV+YLALGAWL+LSSPGEGF+ARTRPTTAM GL AAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAA EEDDMGASAHL
Sbjct:    1 MAHRGTLSPRWQGATSTSSARSRGADVPDEEKEILADPERSGPVHAIRARAPSSYRYIFLATLEGVLSASSFRSARAVSVPIISAFPLHNPAEEALISASASAFAVAAAVRSGAALALGTPFFLLAARCAILALSRVRIPAVQRLQLQQPRLGFPLPTGVDENVAVDLYIIGLAAAVLGGCVPALEMAGILLGVSLKGRSPVWVVSAFVVLIPVVYLALGAWLNLSSPGEGFVARTRPTTAMWGLSAAGHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAASEEDDMGASAHL 306
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BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Match: D7FJ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ43_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.160e-11
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:  650 TGKIQLGSAEGGGEGNGASRYTFTPLARGNLFFLCQVQGG 769
             G+IQLGS EGGGEGNGASRYTFTPLARG   FLC VQGG
Sbjct:   18 AGEIQLGSVEGGGEGNGASRYTFTPLARG---FLCPVQGG 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10171.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K584_9PHAE8.840e-18692.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ43_ECTSI6.160e-1182.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10171contigEcto-sp13_S_contig10171:2907..5969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1995
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000060.2
Cds size1377
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.781118-UTR-Ecto-sp13_S_contig10171:2906..32851681462512.781118-UTR-Ecto-sp13_S_contig10171:2906..3285Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10171 2907..3285 -
1681462512.8241656-UTR-Ecto-sp13_S_contig10171:5730..59691681462512.8241656-UTR-Ecto-sp13_S_contig10171:5730..5969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10171 5731..5969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.7911084-CDS-Ecto-sp13_S_contig10171:3285..40641681462512.7911084-CDS-Ecto-sp13_S_contig10171:3285..4064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10171 3286..4064 -
1681462512.799802-CDS-Ecto-sp13_S_contig10171:4921..51181681462512.799802-CDS-Ecto-sp13_S_contig10171:4921..5118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10171 4922..5118 -
1681462512.808141-CDS-Ecto-sp13_S_contig10171:5329..57301681462512.808141-CDS-Ecto-sp13_S_contig10171:5329..5730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10171 5330..5730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10171.201.1prot_Ecto-sp13_S_contig10171.201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10171 3286..5730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10171.201.1

>prot_Ecto-sp13_S_contig10171.201.1 ID=prot_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=459bp
MCMSVFYAAAAIAGKTNSSFKYSDLAIHLSRGSCACVTEEGLRVWYGQQV
LGVEWRNSRRRTFICAFVARKSLQIFAPDRAIVVKSESEKSCQKRLQTST
CLATSYAPIKRGRTRTDDRVSGSERDGSGSVWTSTVRQGKSSLAARREEV
KEMAHRGTLSPRWQGATSSSSVRSRGADVPDEEKEILADPERSGPVHAIR
ARAPSSYGYIFLATLEGVLSASSFRSACAVSVPIISTFPLNNPAEEALIS
ASASAFAVAGAVRSGAALALGTPFFLLAARCAIFALNRVRIPAVQRLQLQ
QPRLGFPLPAGVDEKVAVDLYVIGLAAAVLGGCVPALEMAGIFLGDSLKG
RPPVWVVLAFLVLIPVIYLALGAWLDLSSPGEGFIARTRPTTAMCGLCAA
GHVILLAGCFYSPDVSRTLGFLLGLVHIVRTLLPAFAYPAGSGAAACEED
DMGASAHL*
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mRNA from alignment at Ecto-sp13_S_contig10171:2907..5969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10171.201.1 ID=mRNA_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10171:2907..5969- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAGATTTTCTTCACGAAACTGGCGGAATGCGGAGGCGTGATCATTTA
TGTTAAGTGAGCAACGGTGAGAAAGCAGGCAAACCCCTTCATACCACGTC
GCGAAACCGGCCACAGCGTGTAACTCAAGCTTGGAAAACGAGTTGGTGGC
ACAAGACCTGGCGTTGTGCCTTCCAATCGGAGCCAGGAAGACCTCGATCA
TGCTCACATCCAACACAAAATGTTGACACAGACTCACAAATGTGTATGTC
TGTGTTTTACGCGGCTGCGGCCATCGCAGGCAAAACCAACTCGTCGTTCA
AGTATTCTGACTTGGCGATTCATTTATCGCGTGGATCGTGCGCCTGTGTG
ACGGAAGAGGGTCTACGTGTGTGGTACGGGCAACAGGTCCTTGGCGTGGA
ATGGCGGAACTCTCGTCGTAGAACTTTTATTTGCGCTTTTGTCGCGAGAA
AGAGTTTGCAAATTTTTGCTCCAGATCGTGCGATTGTTGTCAAAAGCGAA
AGTGAGAAAAGTTGTCAGAAACGTTTGCAAACTTCAACTTGTCTCGCGAC
TTCTTATGCTCCCATCAAACGCGGTAGGACACGTACTGATGACAGGGTGT
CTGGTTCTGAGCGTGATGGCTCTGGTTCGGTCTGGACCAGGTGTGATAAA
TACTATACGGAGAAAGTTCTTGAGAAGGCCACTCCTTGTGGATGTCGTTA
TCGACACTCTCGCCCCACTGTAGATCATTTACAGTCCGCCTGTTTCACGT
CGGTAGTACCGTCCTCGGACGCACAGCACATGCCGATTCAAACGACCCCG
TTCATCGCAAGCCCGTACTACAAATCGTTGCGCTTTCCACGTGCCGTATA
GCACCGTCAGACAGGGAAAATCCAGCTTGGCAGCGCGGAGGGAGGAGGTG
AAGGAAATGGCGCATCGAGGTACACTTTCACCCCGTTGGCAAGGGGCAAC
CTCTTCTTCCTCTGTCAGGTCCAGGGGGGCTGATGTACCTGATGAGGAGA
AGGAGATTCTTGCAGACCCGGAGCGCTCGGGCCCGGTTCACGCCATTCGT
GAGTCCACTTGTCCGCTTACATGCACCTGACCCTCTTCAGCAGCTTGAGT
CCTACGTGACGCTGAGGCGTTGGCCGTGGGCACTGTGCCGACGTATGGGT
AACCAGACTGGGTGTGATGGTTGCGCTAGCGTACATTCTGGTCGCATGCT
GTGGTAGCCGGTCGCATTGTGTGCTCCTTGCTGTGTTATTTATGTCATCT
GTGGAATCTGTCTACGATGTTCAATGTTATGGTAAAGAGCGTGGCAATGC
ACGGTGTGTCTCCTGTACCTGATGGCTTGCGAGTATCTTTTGCGCTACAG
CAATGCTTCTGCACTACATATTGTAATAGCAGAGCGTTCCAAACGGTGTG
CGAAGTGTCTGCGCATGTGCTTTGGGTGTTTTTTTCCCTGCTTTCCCGGC
GGGATCGAACAACTGATGAACACAGCCGTTTTTGCGAGTGATACATACGT
TGTTGTCTTTTGTTTTTGGGGGGGATGAGAGAATGTCGCCCAGTCGCCGT
TTGCATCGTTGGAGTGCTTTGTAAAGGGGGGGAAAGCACCGTAGGTGCAT
ACAAGACAGCCGCAGTTTCTCTTTTGGTGTTTTCGTCTTGGCGCGGCGCC
AACTTCCCCCCGGAAAAGACATCGCTACAGCTGTACGTTCAGCACAGGGC
CGTTTCGCCGGACGCAAAGAGTAGGCTGATATAGTTGGACGCTGCGCTCG
CCACGATGATGACTTCATGACTTCAGTTTTAAAACGTGCCAACCTCACGA
AAACATCATGCTACAGAGCATGCAAGGTTGCCCCAAGCTTGTCGCAACGT
TTAAATTTCGAAAGCCCGCTGCCCTCGCGCCCATTCGAATGAACGACGTC
TGCAGGGGCTCGAGCTCCAAGCAGCTACGGCTACATCTTTCTCGCTACGC
TTGAAGGGGTCTTGTCGGCTTCTTCTTTTCGTTCTGCATGCGCCGTCTCT
GTGCCGATAATTAGCACCTTCCCTCTCAACAACCCAGCCGAGGAGGCGTT
GATTTCAGCATCAGCATCAGCTTTCGCCGTTGCTGGAGCAGTGCGTTCCG
GCGCCGCGCTAGCCCTGGGGACGCCTTTCTTTCTCTTGGCAGCACGGTGT
GCTATTTTCGCCCTGAACCGCGTGAGGATTCCAGCGGTGCAGAGGCTACA
GCTACAGCAACCCAGGCTGGGATTTCCCCTGCCCGCTGGCGTGGACGAGA
AGGTTGCAGTGGACCTATACGTTATCGGCTTGGCCGCGGCGGTGTTAGGC
GGGTGTGTACCGGCGCTCGAGATGGCGGGAATCTTCTTGGGGGATTCTCT
GAAGGGAAGGCCACCTGTGTGGGTCGTTTTGGCCTTCTTGGTGTTGATTC
CAGTGATATATCTGGCCCTGGGCGCGTGGCTTGACCTTAGCTCGCCAGGT
GAAGGGTTCATCGCCCGCACGAGGCCCACCACAGCGATGTGTGGGCTGTG
CGCAGCGGGGCACGTTATTCTGCTAGCCGGGTGCTTTTATTCTCCGGACG
TGTCGAGAACTTTGGGCTTTTTGCTTGGACTGGTGCACATCGTGAGGACG
CTGCTCCCCGCCTTTGCTTATCCTGCGGGCTCGGGGGCTGCGGCGTGTGA
AGAAGACGACATGGGTGCATCGGCGCACCTCTGATTGTGTAGGGTTTGCT
CATTGAATTGGAATACTTGGTTGGTTTCGCGGGAACCCTCGAGCGTGCTG
GCTGAGACGTTGAGATGACAAAAAACTACAACGAGTGTATGCATGCGATG
GTTCAACTTCTTTTATTGCGGGTAGTTTGGGGAGGAAACGATACATCGCA
CACGTGTCATTATCTCTTATATTGTAGGTCCAAGTCGTCGCTTAGTTTTG
TTTGTGGTGTGGGTATGGCTCGATCTGTGCAGATGCGCGCCCTGTTGCGC
GTAGCGGGTTCCTTTGTTATTATCCTTGACTCTCACTTTACGCAGAACTC
TTTACGACCACTGGTTTACCGAGTAGTGCGCTTAGACTAATGTATGCTCT
GGTACGGTTTCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10171:2907..5969-

>mRNA_Ecto-sp13_S_contig10171.201.1 ID=mRNA_Ecto-sp13_S_contig10171.201.1|Name=mRNA_Ecto-sp13_S_contig10171.201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10171:2907..5969- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTATGTCTGTGTTTTACGCGGCTGCGGCCATCGCAGGCAAAACCAA
CTCGTCGTTCAAGTATTCTGACTTGGCGATTCATTTATCGCGTGGATCGT
GCGCCTGTGTGACGGAAGAGGGTCTACGTGTGTGGTACGGGCAACAGGTC
CTTGGCGTGGAATGGCGGAACTCTCGTCGTAGAACTTTTATTTGCGCTTT
TGTCGCGAGAAAGAGTTTGCAAATTTTTGCTCCAGATCGTGCGATTGTTG
TCAAAAGCGAAAGTGAGAAAAGTTGTCAGAAACGTTTGCAAACTTCAACT
TGTCTCGCGACTTCTTATGCTCCCATCAAACGCGGTAGGACACGTACTGA
TGACAGGGTGTCTGGTTCTGAGCGTGATGGCTCTGGTTCGGTCTGGACCA
GCACCGTCAGACAGGGAAAATCCAGCTTGGCAGCGCGGAGGGAGGAGGTG
AAGGAAATGGCGCATCGAGGTACACTTTCACCCCGTTGGCAAGGGGCAAC
CTCTTCTTCCTCTGTCAGGTCCAGGGGGGCTGATGTACCTGATGAGGAGA
AGGAGATTCTTGCAGACCCGGAGCGCTCGGGCCCGGTTCACGCCATTCGG
GCTCGAGCTCCAAGCAGCTACGGCTACATCTTTCTCGCTACGCTTGAAGG
GGTCTTGTCGGCTTCTTCTTTTCGTTCTGCATGCGCCGTCTCTGTGCCGA
TAATTAGCACCTTCCCTCTCAACAACCCAGCCGAGGAGGCGTTGATTTCA
GCATCAGCATCAGCTTTCGCCGTTGCTGGAGCAGTGCGTTCCGGCGCCGC
GCTAGCCCTGGGGACGCCTTTCTTTCTCTTGGCAGCACGGTGTGCTATTT
TCGCCCTGAACCGCGTGAGGATTCCAGCGGTGCAGAGGCTACAGCTACAG
CAACCCAGGCTGGGATTTCCCCTGCCCGCTGGCGTGGACGAGAAGGTTGC
AGTGGACCTATACGTTATCGGCTTGGCCGCGGCGGTGTTAGGCGGGTGTG
TACCGGCGCTCGAGATGGCGGGAATCTTCTTGGGGGATTCTCTGAAGGGA
AGGCCACCTGTGTGGGTCGTTTTGGCCTTCTTGGTGTTGATTCCAGTGAT
ATATCTGGCCCTGGGCGCGTGGCTTGACCTTAGCTCGCCAGGTGAAGGGT
TCATCGCCCGCACGAGGCCCACCACAGCGATGTGTGGGCTGTGCGCAGCG
GGGCACGTTATTCTGCTAGCCGGGTGCTTTTATTCTCCGGACGTGTCGAG
AACTTTGGGCTTTTTGCTTGGACTGGTGCACATCGTGAGGACGCTGCTCC
CCGCCTTTGCTTATCCTGCGGGCTCGGGGGCTGCGGCGTGTGAAGAAGAC
GACATGGGTGCATCGGCGCACCTCTGA
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