mRNA_Ecto-sp13_S_contig8659.20100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8659.20100.1
Unique Name	mRNA_Ecto-sp13_S_contig8659.20100.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5L5S8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S8_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 5.450e-110
Identity = 173/245 (70.61%), Postives = 191/245 (77.96%), Query Frame = -2

Query:  214 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK*L*LRVASNAKTVFM*SRSEGCTRRRGKC 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KETKD +G+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK          +   +  R+  CTRRR KC
Sbjct:   80 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKETKDLDGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK---CDCGFECEHRVLLVRNVLCTRRREKC 321

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5JI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI54_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 3.850e-107
Identity = 167/216 (77.31%), Postives = 180/216 (83.33%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVDDE+DKFK
Sbjct:  112 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREQQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDKFK 327

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5KQC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC6_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 1.220e-106
Identity = 172/231 (74.46%), Postives = 188/231 (81.39%), Query Frame = -2

Query:  256 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK*L*LRVASNAKTVFM 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+F  +     SNAKTVFM
Sbjct:  434 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFTVI---AGSNAKTVFM 661

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5KMG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 2.110e-106
Identity = 164/216 (75.93%), Postives = 179/216 (82.87%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL K+ KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:   27 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKQIKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 242

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5JXN8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN8_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.230e-106
Identity = 191/323 (59.13%), Postives = 214/323 (66.25%), Query Frame = -2

Query:   13 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK*L*LRVASNAKTVFM*SRSEGCTRRRGKCT*L*AGKSRRKVQ----GDV*GVG*PGEDVSCTGAWEVG*KGGKGY--R*DRQ-----TREDIFERLLAK*EGTVGHR 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPT WVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK             F       C  R          K  R+V     G + G      +      W V   G + +  +  R      TREDIFE  LAK +GT+GHR
Sbjct:  178 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTGWVKVVDDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK---------CDCGFE------CEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWTREEWTVAVLGHRRWVEKTGRDIVRIITREDIFEPPLAKLKGTIGHR 485

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5JT82_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT82_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 3.930e-106
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:   71 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKIILGCSTRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 286

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5KUR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR4_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 2.110e-105
Identity = 159/203 (78.33%), Postives = 175/203 (86.21%), Query Frame = -2

Query:  301 PLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 906
            PLEYA EVW+GNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RLLR  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG++VYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:    2 PLEYAGEVWKGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLLRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLWKESKDKEGLKVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 204

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 2.630e-105
Identity = 165/216 (76.39%), Postives = 180/216 (83.33%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:  113 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 328

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BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5K739_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K739_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 4.600e-105
Identity = 165/216 (76.39%), Postives = 180/216 (83.33%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS+RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:  185 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 400

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Match: A0A6H5L855_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L855_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 5.310e-105
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = -2

Query:  301 RLDALGQNKVIVPPLEYA-EVWEGNKTIVKVLKAAQMKAGTAILGCSKRTSNAAVRAEQGI*SLRSGLDARKPTWQYRMCDMGE*RLLRKAWEAKWENKKWGRQPTEWVKVVGHVWKGFEFDKDYMLETEGLKGFKEKISVAFAQKEKQNLGKETKDAEGIEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFTTGDTGLRERRRRHETVDDENDKFK 945
            R+       VIVPPLEYA EVWEGNK +VK L+AAQMKA   ILGCS RTSNAAVRAE GI SLRSG DARK TWQYRMC MGE RL R  WEAKW NKK GRQPTEWVKVV  VWKG + D+D  LETEGL+GFKEKISVA A++E+QNL KE+KD EG+EVYGMLKEGIGFKDYLHGPMDAGTKLKVKF TGD GLRERRRRH TVD+E+D+FK
Sbjct:  165 RIKLTVLKSVIVPPLEYAGEVWEGNKKVVKELEAAQMKAAKIILGCSTRTSNAAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFK 380

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8659.20100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L5S8_9PHAE	5.450e-110	70.61	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JI54_9PHAE	3.850e-107	77.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KQC6_9PHAE	1.220e-106	74.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMG6_9PHAE	2.110e-106	75.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXN8_9PHAE	2.230e-106	59.13	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JT82_9PHAE	3.930e-106	76.39	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUR4_9PHAE	2.110e-105	78.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LRL5_9PHAE	2.630e-105	76.39	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K739_9PHAE	4.600e-105	76.39	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5L855_9PHAE	5.310e-105	76.39	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8659	contig	Ecto-sp13_S_contig8659:4827..5844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	1018
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-28_001045.1
Cds size	405

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464137.7539623-UTR-Ecto-sp13_S_contig8659:4826..4841	1681464137.7539623-UTR-Ecto-sp13_S_contig8659:4826..4841	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8659 4827..4841 +
1681464137.775635-UTR-Ecto-sp13_S_contig8659:5246..5844	1681464137.775635-UTR-Ecto-sp13_S_contig8659:5246..5844	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8659 5247..5844 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464137.765007-CDS-Ecto-sp13_S_contig8659:4841..5246	1681464137.765007-CDS-Ecto-sp13_S_contig8659:4841..5246	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8659 4842..5246 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8659.20100.1	prot_Ecto-sp13_S_contig8659.20100.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8659 4842..5246 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8659:4827..5844+
coding sequence from alignment at Ecto-sp13_S_contig8659:4827..5844+

protein sequence of mRNA_Ecto-sp13_S_contig8659.20100.1

>prot_Ecto-sp13_S_contig8659.20100.1 ID=prot_Ecto-sp13_S_contig8659.20100.1|Name=mRNA_Ecto-sp13_S_contig8659.20100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MANRSFSLCQKSLKNVFPSLSILTISLPAFSTHFPCPSAANVFSWLSHAS
NISLYFSSTFPSSELRALPSSSCTAFTPRLHEHGLRIRSHTQSQSFKLVV
FVVYRLMSSSTFSKACVPGRKFDLQLCSCIHWSM*

mRNA from alignment at Ecto-sp13_S_contig8659:4827..5844+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8659.20100.1 ID=mRNA_Ecto-sp13_S_contig8659.20100.1|Name=mRNA_Ecto-sp13_S_contig8659.20100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8659:4827..5844+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCGATCACCGATGGCCAACCGTTCCTTCTCACTTTGCCAAAAGTC
GCTCAAAAATGTCTTCCCTAGTCTGTCTATCCTAACGATATCCCTTCCCG
CCTTTTCAACCCACTTCCCATGCCCCAGTGCAGCTAACGTCTTCTCCTGG
CTATCCCACGCCTCAAACATCTCCCTGTACTTTTCTTCTACTTTTCCCAG
CTCAGAGTTACGTGCACTTCCCTCTTCTTCTTGTACAGCCTTCACTCCGC
GACTACATGAACACGGTCTTCGCATTCGAAGCCACACGCAATCACAATCA
TTTAAACTTGTCGTTTTCGTCGTCTACCGTCTCATGTCTTCGTCGACGTT
CTCGAAGGCCTGTGTCCCCGGTCGTAAATTTGACCTTCAGCTTTGTTCCT
GCATCCATTGGTCCATGTAGGTAATCCTTGAAACCTATTCCTTCTTTCAA
CATTCCGTACACTTCTATGCCCTCCGCATCCTTGGTCTCTTTTCCTAAAT
TCTGTTTTTCTTTCTGGGCAAAAGCAACAGATATCTTCTCCTTGAATCCT
TTTAGACCCTCCGTTTCCAGCATATAGTCTTTGTCAAATTCGAACCCTTT
CCATACGTGACCTACAACCTTGACCCACTCCGTGGGTTGTCTACCCCACT
TCTTGTTTTCCCACTTCGCCTCCCAGGCTTTTCTCAGCAACCTCTACTCT
CCCATGTCGCACATGCGATACTGCCATGTCGGCTTCCTTGCGTCTAGTCC
CGATCGTAGGGATTAGATCCCTTGTTCTGCCCTGACGGCTGCATTACTTG
TGCGCTTGGAGCATCCTAGGATGGCTGTCCCTGCTTTCATCTGCGCCGCC
TTGAGCACTTTGACTATCGTCTTATTTCCTTCCCATACTTCGGCGTACTC
TAGCGGCGGTACGATTACCTTATTCTGTCCTAGCGCATCGAGCCGCGGCT
ACCATTCGGCTATATCTTGCTCGTTTGGGGAGGACGTAGTCGGAAAAAAA
AACGTGGACTTGGTGTCT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8659:4827..5844+

>mRNA_Ecto-sp13_S_contig8659.20100.1 ID=mRNA_Ecto-sp13_S_contig8659.20100.1|Name=mRNA_Ecto-sp13_S_contig8659.20100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8659:4827..5844+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAACCGTTCCTTCTCACTTTGCCAAAAGTCGCTCAAAAATGTCTT
CCCTAGTCTGTCTATCCTAACGATATCCCTTCCCGCCTTTTCAACCCACT
TCCCATGCCCCAGTGCAGCTAACGTCTTCTCCTGGCTATCCCACGCCTCA
AACATCTCCCTGTACTTTTCTTCTACTTTTCCCAGCTCAGAGTTACGTGC
ACTTCCCTCTTCTTCTTGTACAGCCTTCACTCCGCGACTACATGAACACG
GTCTTCGCATTCGAAGCCACACGCAATCACAATCATTTAAACTTGTCGTT
TTCGTCGTCTACCGTCTCATGTCTTCGTCGACGTTCTCGAAGGCCTGTGT
CCCCGGTCGTAAATTTGACCTTCAGCTTTGTTCCTGCATCCATTGGTCCA
TGTAG