prot_Ecto-sp13_S_contig8659.20099.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8659.20099.1
Unique Nameprot_Ecto-sp13_S_contig8659.20099.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length68
Homology
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: D7FV06_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV06_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.230e-41
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    3 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            P  EDS+FECNICL+GV+EP+VTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTA NVIPLYGRG +
Sbjct:    8 PGEEDSYFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVIPLYGRGAE 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A6H5JXT6_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.400e-40
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0
Query:    5 GEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            GEDS FECNICL+GV+EP+VTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTA NV+P+YGRG +
Sbjct:   17 GEDSCFECNICLDGVREPVVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTASNVVPIYGRGAE 80          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A835ZFB6_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.830e-36
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    4 EGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            +  DS FECNICL+ V EP+VTRCGHLFCWPCLYRWLNTN TECPVCKAGV+  NVIPLYGRG D
Sbjct:    9 DSRDSRFECNICLDHVNEPVVTRCGHLFCWPCLYRWLNTNHTECPVCKAGVSCDNVIPLYGRGQD 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A7R9YCR0_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCR0_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.660e-32
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 0
Query:   10 FECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            FECNICL+ V++P+VT+CGHL+CWPCLYRWLNTN  +CPVCKAGVT  NVIPLY RG+D
Sbjct:   13 FECNICLDVVRDPVVTQCGHLYCWPCLYRWLNTNHYQCPVCKAGVTRENVIPLYVRGSD 71          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A7S2V596_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V596_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.550e-31
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 0
Query:    3 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            P  EDS FECNICL+ V EP+VTRCGHLFCW CLYRWLN N+T+CPVCKAGV+  NVIP+Y RG +
Sbjct:   96 PIEEDSRFECNICLDLVHEPVVTRCGHLFCWSCLYRWLNVNRTDCPVCKAGVSQDNVIPIYTRGAE 161          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: D8UF78_VOLCA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UF78_VOLCA)

HSP 1 Score: 109 bits (272), Expect = 1.100e-29
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0
Query:    1 DYPEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTE--CPVCKAGVTAMNVIPLYGRGTD 68
            D+ EG+ S FECNICLE  KEP+VT CGHLFCWPCLYRW+        CPVCKAGV    V+P+YGRG++
Sbjct:    4 DHSEGDSSAFECNICLELAKEPVVTLCGHLFCWPCLYRWMQVQACSRACPVCKAGVEIDKVVPIYGRGSE 73          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: W4HDP2_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDP2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.930e-28
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 0
Query:    3 PEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            P+G  + F+CNICL+ VKEP+VT CGHL+CWPCLYRW+ +N  +CPVCKAGVT  NVIP+YGRG++
Sbjct:   17 PDGSHA-FDCNICLDHVKEPVVTLCGHLYCWPCLYRWICSNS-QCPVCKAGVTQDNVIPVYGRGSN 80          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A1Y1IV45_KLENI (RING-type E3 ubiquitin transferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IV45_KLENI)

HSP 1 Score: 110 bits (274), Expect = 3.180e-28
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    5 GEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQT--ECPVCKAGVTAMNVIPLYGRGTD 68
            GE   FECNICLE  ++P+VT CGHLFCWPCLYRWL  +    ECPVCKAGV+  NVIPLYGRGT 
Sbjct:   64 GEGGSFECNICLELAQDPVVTLCGHLFCWPCLYRWLRLHSQCKECPVCKAGVSEKNVIPLYGRGTS 129          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: W7TVM5_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVM5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.820e-28
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    7 DSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            DS F+CN+CL  V +P+VT CGHL+CWPCLYRWL+TN T CPVCKAGVT  NVIPLYGRG++
Sbjct:   98 DSRFDCNVCLSEVGDPVVTLCGHLYCWPCLYRWLSTNHT-CPVCKAGVTKENVIPLYGRGSE 158          
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Match: A0A1V9Z912_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z912_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.130e-28
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 0
Query:    4 EGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVCKAGVTAMNVIPLYGRGTD 68
            +G  S F+CNIC++ VKEP+VT CGHL+CWPCL++W+  N  +CPVCKAGVT+ NVIP+YGRG +
Sbjct:    2 DGAASDFDCNICIDRVKEPVVTLCGHLYCWPCLFQWI-ANHNDCPVCKAGVTSENVIPVYGRGAN 65          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8659.20099.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV06_ECTSI1.230e-4186.36RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JXT6_9PHAE3.400e-4085.94RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835ZFB6_9STRA2.830e-3680.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7R9YCR0_9STRA2.660e-3276.27RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S2V596_9STRA2.550e-3172.73RING-type E3 ubiquitin transferase n=1 Tax=Fibroca... [more]
D8UF78_VOLCA1.100e-2962.86RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
W4HDP2_9STRA1.930e-2866.67RING-type E3 ubiquitin transferase n=2 Tax=Aphanom... [more]
A0A1Y1IV45_KLENI3.180e-2869.70RING-type E3 ubiquitin transferase n=1 Tax=Klebsor... [more]
W7TVM5_9STRA3.820e-2872.58RING-type E3 ubiquitin transferase n=1 Tax=Nannoch... [more]
A0A1V9Z912_9STRA6.130e-2863.08RING-type E3 ubiquitin transferase n=1 Tax=Achlya ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 12..50
e-value: 1.4E-9
score: 47.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 12..51
score: 13.581
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 4..64
e-value: 2.0E-20
score: 73.9
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 11..50
e-value: 8.1E-12
score: 44.8
NoneNo IPR availablePANTHERPTHR12313RNF5coord: 7..67
NoneNo IPR availablePANTHERPTHR12313:SF0FI06431P-RELATEDcoord: 7..67
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 4..63
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 27..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8659contigEcto-sp13_S_contig8659:1714..2627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8659.20099.1mRNA_Ecto-sp13_S_contig8659.20099.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8659 1714..2627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8659.20099.1 ID=prot_Ecto-sp13_S_contig8659.20099.1|Name=mRNA_Ecto-sp13_S_contig8659.20099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
DYPEGEDSWFECNICLEGVKEPIVTRCGHLFCWPCLYRWLNTNQTECPVC
KAGVTAMNVIPLYGRGTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS